2024-09-29 09:25:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001031293 3575 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus SERPINE1 mRNA binding protein 1 (SERBP1), transcript variant 2, mRNA. ACCESSION NM_001031293 XM_422535 VERSION NM_001031293.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 3575) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 3575) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000239.1. On Oct 25, 2021 this sequence version replaced NM_001031293.1. ##Evidence-Data-START## Transcript exon combination :: AJ851638.1, BU107960.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992531, SAMEA103992543 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-476 JAENSK010000239.1 17627694-17628169 c 477-636 JAENSK010000239.1 17624763-17624922 c 637-774 JAENSK010000239.1 17623518-17623655 c 775-846 JAENSK010000239.1 17623306-17623377 c 847-921 JAENSK010000239.1 17622629-17622703 c 922-1099 JAENSK010000239.1 17620146-17620323 c 1100-1273 JAENSK010000239.1 17614494-17614667 c 1274-1312 JAENSK010000239.1 17613537-17613575 c 1313-3575 JAENSK010000239.1 17610097-17612359 c FEATURES Location/Qualifiers source 1..3575 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="8" /map="8" gene 1..3575 /gene="SERBP1" /note="SERPINE1 mRNA binding protein 1" /db_xref="CGNC:8530" /db_xref="GeneID:424706" exon 1..476 /gene="SERBP1" /inference="alignment:Splign:2.1.0" CDS 95..1369 /gene="SERBP1" /note="isoform 2 is encoded by transcript variant 2; plasminogen activator inhibitor 1 RNA-binding protein" /codon_start=1 /product="SERPINE1 mRNA-binding protein 1 isoform 2" /protein_id="NP_001026464.2" /db_xref="CGNC:8530" /db_xref="GeneID:424706" /translation="
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLRAAESRRKESGGGGGAQGGGGARGGPAGAQSNSSGGAGGGGPGQAGSGGGAGSAAKQLRRESQKERKNPLPPFAASAGGERREEGGGQPGAPLRKEGIRRIGRRPDQQQQQQQGEGKPIDRRPERRPPRERRFDKPADEKGEGGEFSVDKPILDRPMRGRGGLGRGRGRGRGMGRGDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTELDQSAVTEETPEGEEHPPADSENKENEVEEVKEEGPKEMTLDEWKAIQSKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRASRGGRTDKLVKEFDVIHTPNQSSASAPDVDDPEAFPALS"
misc_feature 107..625 /gene="SERBP1" /note="Intracellular hyaluronan-binding protein 4 N-terminal; Region: IHABP4_N; pfam16174" /db_xref="CDD:465041" misc_feature 734..1042 /gene="SERBP1" /note="Hyaluronan / mRNA binding family; Region: HABP4_PAI-RBP1; pfam04774" /db_xref="CDD:461421" exon 477..636 /gene="SERBP1" /inference="alignment:Splign:2.1.0" exon 637..774 /gene="SERBP1" /inference="alignment:Splign:2.1.0" exon 775..846 /gene="SERBP1" /inference="alignment:Splign:2.1.0" exon 847..921 /gene="SERBP1" /inference="alignment:Splign:2.1.0" exon 922..1099 /gene="SERBP1" /inference="alignment:Splign:2.1.0" exon 1100..1273 /gene="SERBP1" /inference="alignment:Splign:2.1.0" exon 1274..1312 /gene="SERBP1" /inference="alignment:Splign:2.1.0" exon 1313..3575 /gene="SERBP1" /inference="alignment:Splign:2.1.0" ORIGIN
gggtctcttcgcggccggccatcttgtgcggcagcgagcagggcgcggggggcccggcagcatcggagcaggatcccgccgacgggggcccatcatgcccggacacctgcaggagggcttcggctgcgtcgtcaccaaccgcttcgaccagctctttgatgacgagtccgaccccttcgaggtgctgcgggcggccgagagtcggcggaaagagagcggcggcggcggcggggcccaggggggcggcggggcccgaggaggcccggcgggggcgcagagcaactcctcgggcggcgccggcggcggaggtccgggccaggcgggctcgggcggcggagcgggcagcgcggccaagcagctgcgcagggagtcccagaaggagcgcaagaacccgctgccgcccttcgccgcctccgccgggggagagcgccgggaggagggcggcgggcagcccggagcgccgctgcggaaggaggggataaggcgcattggcaggaggcctgatcagcagcagcagcagcagcagggtgaaggcaaacccattgacaggagacctgagagacgacctcctcgcgagcgccgatttgataaacctgccgatgagaagggagaaggaggagaattctctgttgataaacccatcctggaccgaccgatgcgtggacgtggtggacttggaagaggccgtggccgtggccgtgggatgggcagaggagatgggtttgactctcgtggcaaacgtgaatttgacagacatagtggcagcgatagatccggcctaaagcacgaggacaagcgaggtggcagtggatcacacaactggggaactgtcaaagacgaactcactgaattggatcagtctgctgtaactgaggaaacgccagagggagaggaacatccgcctgctgattctgaaaacaaggaaaatgaggttgaagaagttaaggaggaaggtcctaaggaaatgaccctggacgaatggaaagctattcaaagtaaggatcgtgcaaaggttgagttcaacatccgtaaaccaaatgagggtgctgatgggcaatggaaaaaaggatttgttcttcacaagtcaaagagcgaggaggctcacgctgaggactcggtaatggatcatcacttccgtaagcccgccaacgacatcacatcccagctggagatcaactttggagacctcggccgccccggacgcggtggccgagggggccggggtggccgagggcgtggaggcagggccagccgtgggggcaggactgacaagttggttaaggagtttgatgtgatccacacgcccaaccagtcaagtgcttctgctcctgatgtagatgacccagaggctttcccagctctgtcctaaactggatgtcataagccaaccctgccctcgtcgggccttcctctccgaggcttgcatgcttaaggatcctaaacaactaagaaatttaaaaaaaaaaaagaaaggagactgtcattcataccattcacacctaaagactgaattttatctgtttcgaaaatgaacttctctcgctacacagaagcaacaatatggtagtcagttttgtatttagaaatgtaatggtagcagggatgttttcataattttttcagagattatgcattcttcatggatacttttttgtattgctgcttgaaaatatgcgtttccaaacttgaaatataggtgtgaacagtgtgtaccagttaaaagctttcacttcatttgtggttttttttttaattcaggattttagagattttcccctaactgcgagctggatttgactccttgcacactacctgtgtccccttggctcctgcttggcaggtttttactggcccgtggtcttttggaataggtggtgttttaatttggcagactgagtgctgtgtgaaacaccaactcctgaagttacttcggttctaatgcttaatttcaaacttggaaaaacagtcatttttcatctgcttggtggtttgtttacacagaagctttatacagaattgttagcaggtacttgcaaaatgctccaagcacactgggctctggttccatggccgtggatccggcagcgatgtgtggctcgttggtctaaacaggttttgaaattagtgtgacaccttgcattcacccctcttacctttttattcccttcttcaacagaacaagaagctttgttggcaaaaagggaaaaaagcttttaaattacctctgcttttcctttgggagggtgccctggagctgagccacctctcctcttgtgcagagctgggagggaggtggcagctgcagctcctctgcggctgtggcacagtgcccccaggacagtgggaccccatgtgctcacagcacacacaggcagccctgctgaggaggcagccctggcaggagggccgggggcactgcaggctgtgtgtgatgcagaaaggtgcagaacagaaccccggcgcttcaccttcagtccaaatttcatctgggtgctgtttgaggctgggctgctggctgacaaatgaatgtttttcagagagcgattgtaagaaatccttcacaccactgtagtaacgcgtaggtttaatttaacccccgccaatggggcctcaccgcttcgctacccaaaagcagttcagagaatgacgagtaaggagggtttcgtagggtttttatctgcagcatttagtaggagactagaagcaggattctcattttatttaatgttttacactttggacagcttaaaacatttgtagtttcttaactaggtagatagaaaacaaatggtaatgccctatttttttaaaagctgtacaggacaggcaaaaagtgtgggagacctttgactatgtaataccgcactccttgaccgtggtgttggctggctcgatttccctgaactattttctacagacgtgtttgttgtaaaccactgtgaataccatcagatcagacttcctggtgttctcacctgccagttcaaagcaccaggctgggaggaggaggcaggtttccagccggtggatggcgatagctcttggctcatttctcctgactaagcaggcaggcaggtgctcggtgcaggggctgcactccttccagcactcagtgtttctcttccgtctcccgctgtgagttggtagaatgtgctgcagtttcagttttgggacgccttgagtaatacaactaattgccttgacatgcagaaacgcttacagaaaagctttctctgtaacataagccttccccatctccagactgtgtatctgcttgtttcagttgtcactctgctttcttccagatgccttctgggctgtccagttggtcatttggggccaggctggccagaagctttcccttctgctttagagactagagcagttcccggaacggcacgtcacgtacggtgctcaagacagcttgtacttaaattggtccgtctgctgttctgatagatgtaaatttgcctctttcagtccattcgtgtcaagaactaaaactgtgaacatatatctttaatattggtgggtgttaactgaaataaaggtttattttcatgctcttttaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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