2024-06-29 21:45:21, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001031214 4270 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus glia maturation factor beta (GMFB), mRNA. ACCESSION NM_001031214 XM_421451 VERSION NM_001031214.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 4270) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 4270) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 4270) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000215.1. On Sep 23, 2021 this sequence version replaced NM_001031214.1. ##Evidence-Data-START## Transcript exon combination :: AJ720612.1, SRR13267649.95282.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-84 JAENSK010000215.1 27006132-27006215 85-181 JAENSK010000215.1 27007550-27007646 182-231 JAENSK010000215.1 27008106-27008155 232-281 JAENSK010000215.1 27009105-27009154 282-364 JAENSK010000215.1 27010220-27010302 365-438 JAENSK010000215.1 27011811-27011884 439-4270 JAENSK010000215.1 27013840-27017671 FEATURES Location/Qualifiers source 1..4270 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="5" /map="5" gene 1..4270 /gene="GMFB" /note="glia maturation factor beta" /db_xref="CGNC:51994" /db_xref="GeneID:423560" exon 1..84 /gene="GMFB" /inference="alignment:Splign:2.1.0" misc_feature 25..27 /gene="GMFB" /note="upstream in-frame stop codon" CDS 82..510 /gene="GMFB" /codon_start=1 /product="glia maturation factor beta" /protein_id="NP_001026385.1" /db_xref="CGNC:51994" /db_xref="GeneID:423560" /translation="
MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKQLVVLDEEHEGISPDELKDELPERQPRFIVYSYKYQHEDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH"
misc_feature 106..471 /gene="GMFB" /note="ADF-homology domain of glia maturation factor beta and related proteins; Region: ADF_GMF-beta_like; cd11283" /db_xref="CDD:200439" exon 85..181 /gene="GMFB" /inference="alignment:Splign:2.1.0" exon 182..231 /gene="GMFB" /inference="alignment:Splign:2.1.0" exon 232..281 /gene="GMFB" /inference="alignment:Splign:2.1.0" exon 282..364 /gene="GMFB" /inference="alignment:Splign:2.1.0" exon 365..438 /gene="GMFB" /inference="alignment:Splign:2.1.0" exon 439..4270 /gene="GMFB" /inference="alignment:Splign:2.1.0" ORIGIN
ggcgcagtggggagggcagctcagtgaggaggcggcggggcggcggcgcggacggttgtggtgttggcgcgcgcgctcaagatgagtgaatctctggtggtttgtgatgttgctgaagacctggtggagaagctgcgaaaattccggttccgtaaagaaaccaacaatgctgccattataatgaaaatcgacaaggataagcagttggtggtactggatgaggagcatgagggtatttctccagatgagctaaaagatgagctgcctgagagacaacctcgatttattgtgtacagttacaagtatcagcacgaagatggaagagtttcttatccattgtgctttatcttctccagtcctgttggatgcaagcctgagcagcagatgatgtatgctgggagcaagaataagcttgtacagacagctgaactcactaaggtatttgaaataagaaatacagaagatctaaccgaagaatggctgcgtgagaaactgggcttcttccattaagaaaacctctgtaatgagtatttatgtaccatcctgatcatactggaaccagacatgaatacttacagctaaaaatgcactgtatttacatctgtttcctgcagtatgtctcttgtgcaaagaatagcaggtctgtctccttgaagtaacagatctttgcagatgtttccttatgtgtacctgttaaaagggaatactcctctgcagggaatccttttgcactcttgtgactaatatttctacaattaaaatagttcagttctgaatttatagctatatacaggcataatttggaagctgatgctaactctttctgagctacaaatgcatccttacgacgtatactagtcatttatatgcaaaaactgtgtactgtcattgtcagaatttatgatgtcctctcaactttgaaaactattccctaggagcatttagtgttcaacagacaaaatccttgtacagcgaatctacctatgtaccctctgtgttatgtccatgtgaactttctcaaattcttggaactaattcttgtcattccagtaattcctcagctcactgaggcagtcgtactaaatttcagggcaaagctttgactgtccaattctcatgctgatacagtcttacagggactagaagatcactaagggctgaattatgactctggttcctctcataccagatgtcttgcgtatgtaacttactacactgttaagaagtttacctctttgctcctttcctcttatacgaacacctgtgaatactgtgtgcctttaatttgttagctttaaaatgacttgagaattttacactgccacttactacaaatttggtaaaaactttgttaaagaatccaagtaacgtttttcctagtgcctagtgctgcagatgacatctgtaaaacaaaagctaacctccttttcttagcaattgcagtcatctgctctattcctaggagtccaggaggttaaagcttttcatggtactgagtgatttatatctttttttgttataaaagttggccacacgtagctttttcagtgttttaatgacagtctctaattttcttaactgcttgttagtcaaaattacattccagatgaaagcttttgcatacgggatttgattttcatttacttacagttcatctctttgaaacagtaaagattctaatgtgaaaatagtatgtgacttttataaatgacctttttacagagccattttatatcgagtagaatagctgtctgctatgggacattgtgttcagccaacgcagtggcagaaggagtgctcatgtgacagtatctcactatcttactcttgagtgtttgttgtgctgctgagtaagtgtctgtgtaagagcagcttcctgttgataacgtaccttaaagcacagctgccctaacaaatctggtgaggaggaacgtgttgctaaatttggaggccagtatttcgtgctgtgaaacctttgccaaatgaaggtctgttttttgtttctttgtaggcatatgttgttagtggttttaacactaattccttaaagaccacaaggaattgatctgcagaggtcctcggtgttgatagatctcttcttagtttgatgttactgctcatttatttgtgtatggatctgacttgagaggagctcttcaaaatacgtgttagagtgattcaattaaattgatctttcagttctgaaaggaaacgcttgtaattaaaatacaatttctctggtgaactggaaaaccaatttcatttccctggacaaaaatatgttgactatgaaactgcttgatcgttctgtactaccacctcttattttttaacaaacattgtgtaagtaagacttaactttagaagaatgatgtcaatcatggcattagcgttgaggcagcagaagtcttgtttccttggtgttgtgctagaggtaaggcctgttaaagtgtagtgtggctgaagaaaatttgccacttgaaatattcaacttgatattttttttattgggaaaactggattaatagcttttattactgtattttgtacactggtgggctgccaacatccaactgctgcttgcacaggtctcaacaaaaataactgcaaaaggagactctctggagagaaggaaggagctgctgcagtcagatgagggaagcaggttctgcatctctgcatcactccgccttctgctgaacgacctctggtacttaagattatgtccatgtagtggaactcttcatttggagttctttactgttcacttggagtgtttttgcttctttcacttaaggatttctgccttagatgctgcccttcaagtcttgcagaaagcaaactagttctattgagagtgttaaagcccacgttcttgtggaagacggtattgatgctgctcagcctaccagtattagtcttgtaacagctttgcttcatagctgtagctccttccctgctttgagctgtggcgatgaggaagcagctgcaggtgcttgaagaaagagtacacagaggatgtttgtcattctaggcttgtttgttgttttcttgtttccagtacagtgttttggcatgattatctgccatgtgctgtcctaggcccttgagatataggtaatgctaatacttggttaaacaaagacattgattatatccaaatctattctgcacaaatgctcgttttcatatttttcccaccttatctgtagagctgtatattccttagtcctccccctttacgatcagtgggaggtttggtgtgtctgtgttcagaaggccagtatattctgactacgatttgctgttacctgtcaccacgtgcttgtcttgtattttcagatctctcaagacggttcaaacaagatgaattaaataatgcagcctatgggagtctttgtagctgaaaggtctgagagtcagctttttccattgtgagctcctatttttcaggagttagtgagttggccataaaatctttggccaagagtttaaggtctttcataaagagagacttctgccgcagttttgctttcagtattgactagatggctgggatacagctcttgtaatcctgctcattgatggtaagctgaattaaagcatgaatttgcatggtaacccataaaatggacttgtaatgttcaaatattttttaatgaactgtaaatgctgatatttgatggttcaagtgtgtttctagaatcatgaatgctgttttgagctttcagaggaggcaataatgatgttgacacctttccatttctccaaaggagcatcttatgtatttgtaccaagattccatttttgtatctttaactataaaataagtagtctagaaacaatgttaaacaagtaaaggggatctgagtcaaacatgcaaaagcgagggatgctgacaactcctcatgtcactgtgcttgaaaggactttaagtcacactttctgatgcatgcaactagtaactgagaaatggagctgtaatgtgacatgagaattgaggctctttgcttttgctacgtgacccagacttggtgtgacttgtgcactgtgatctgtctgggttggcatcagtgctgcaggtggcaaaaggtgggagggattcatggccagtcttggaactcagcagttccgtgaacataccagtaaccagtacaacttccatatgctgtttagtctatgctagttcacattgcatgttcactttaaaccaaatcttttttgctaagcatggtgcttgtattggtataaataaaatgtttaattaaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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