2024-06-29 21:46:14, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001031094 3067 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus UBX domain protein 2A (UBXN2A), transcript variant 1, mRNA. ACCESSION NM_001031094 XM_419983 VERSION NM_001031094.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 3067) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 3067) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000070.1. On Oct 25, 2021 this sequence version replaced NM_001031094.1. ##Evidence-Data-START## Transcript exon combination :: HAEK01008307.1, HAEK01030004.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-72 JAENSK010000070.1 2315594-2315665 73-125 JAENSK010000070.1 2318178-2318230 126-261 JAENSK010000070.1 2319612-2319747 262-371 JAENSK010000070.1 2321357-2321466 372-512 JAENSK010000070.1 2322978-2323118 513-677 JAENSK010000070.1 2328358-2328522 678-3067 JAENSK010000070.1 2331177-2333566 FEATURES Location/Qualifiers source 1..3067 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="3" /map="3" gene 1..3067 /gene="UBXN2A" /gene_synonym="UBXD4" /note="UBX domain protein 2A" /db_xref="CGNC:12353" /db_xref="GeneID:421973" exon 1..72 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 73..125 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" CDS 94..966 /gene="UBXN2A" /gene_synonym="UBXD4" /note="UBX domain containing 4" /codon_start=1 /product="UBX domain-containing protein 2A" /protein_id="NP_001026265.2" /db_xref="CGNC:12353" /db_xref="GeneID:421973" /translation="
MDNIKTVKEEWMCKSRTGDQILNGTEQNHDYFVDNLFEEAQKIGAICMSPTTVKNQVDVIIKLWKNGFTVNDGELRSYTDVGNQQFLDSVKKGELPFELQKVFEKEEVDVKVEDKKDELYLSSKKPIFHPFSGHGYRLGSATPRIISKAREDHQGAADKRCLPVVPLNDLEPITNIQIWLADGERIIQKFNVSHRISHVRDFITKYQGSEGGVPFMLTTSLPFRELQDETLTLQEAKLQNAVVVQRLRKTTEPFRLLAMKAPDDDCKTAATPNGRLKNEQKNAMKSTSSN"
misc_feature 274..501 /gene="UBXN2A" /gene_synonym="UBXD4" /note="SEP domain; Region: SEP; pfam08059" /db_xref="CDD:462348" misc_feature 592..843 /gene="UBXN2A" /gene_synonym="UBXD4" /note="Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar proteins; Region: UBX_UBXN2A; cd17160" /db_xref="CDD:340680" misc_feature order(616..618,622..624,628..633,640..645,649..651, 751..756,760..762,808..819,823..825,829..831) /gene="UBXN2A" /gene_synonym="UBXD4" /note="putative UBX-p97 interaction site [polypeptide binding]; other site" /db_xref="CDD:340680" exon 126..261 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 262..371 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 372..512 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 513..677 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 678..3067 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" ORIGIN
gcagtggagcgcgggacagtgaggacttggtgcgctgcggaggccgcgggcggtgctgcgctgcggggccgggaggagcctcaggatgaaaacatggacaatatcaaaactgtgaaggaagaatggatgtgtaagtcaagaactggtgaccagattttgaatggtacagaacaaaaccatgactattttgtcgataacctttttgaagaagctcagaagatcggtgcgatatgcatgtctccaactacagtcaagaaccaggttgatgtgatcattaaactttggaaaaatgggtttacagtaaatgatggtgaacttagaagctacactgatgttggaaatcagcagttcttggactccgttaaaaaaggggaactgccttttgagctacagaaagtatttgagaaggaggaggtagatgtgaaggtggaagacaaaaaagatgagttgtatctgtcatcaaaaaagccaatatttcatcccttttctgggcacggttacagattaggaagcgctactccaaggataatctctaaagcaagagaggatcatcaaggagctgctgataaaagatgccttcctgtagtacccttaaatgacttggagcctatcactaacatccagatctggttagcggatggggagaggataattcagaaattcaacgtttcccacagaataagccatgtcagagacttcataacaaagtatcaaggatcagagggaggtgttcccttcatgctgactacttcgctgccctttcgagaactgcaagatgagacgctcacactacaggaagcaaagttgcaaaatgctgttgttgttcagagacttcggaaaacaaccgaaccttttagactgttagcaatgaaagctcctgatgacgactgtaaaactgctgctacacctaatggacggctcaagaatgagcaaaaaaatgctatgaaaagcacaagttcaaattagtttattactgactgaaagctacacacaggcagaactagacaaaatgtaatcagcaatatctggatgcactaccattcttacctagtgtgatcttagagagcaaatgtgtgctgtgctgtaatctgctgtaacaaaaatattttcaactaattttggtgatcagagcctggctgaataatgcagcagaggtaactgtacggcagggattgtccttatgatttccttggctttgctagcatgttcttcaatgagtatacttaggtagaatggtactctgagacttaattactactggtaacacattttaggggaaaaaaaatatttatttttgcactttagattaaagagaaactgaactggttgacttaatttatacttcaatataaattgctccagtttccctttgtgttttagtaacaggcaatagatgctgcagggaagttcacatttgaactcctcgaagtattttgaaaatcattgtaagtatcattagtatttaacttcatcacgagatccgcagtgtgaatgtcctattaagtcttcacatgatggtaggtgcatgtgtaagaagattgaaattagctagcatggtgcatactggatatgaagtgcctcaaagtaagctctgaaggaatcgttactcctagtggttgaagtgttttctgtctctcatgttctgctacagatgtcttacagacagggtgatgttagactgcctggctcactaggatagagatctgcttttagcctcgtcacagagaaacttcactttttctgcagtttgccaagaggctgtagtggcttaggaggacacagttgtttttgtactacatatctgtctctgtcctgaactagccatctgatgagatgtcaactgcatgtagacaaacttcaaagatatctaaaatccatatttgaaaatcgcgacttcttctccactcttccactccctttccatccaaattctattttttttttgtccttgtattttggcgtaagatttatacccaaccatcccatgttttgctaaaggagaacattaaggactaaatatatatattttgtactggttgtgttaaatcacacatgggtttgtgtatggaactagagtctcttggtaaagactttcttggggtcttcaataaatgctgactagtttgtgctacctacacaaatgggtgattgtcagagttgaatttcttttgcatggttaaagataactttgggcttctctgttcttgttttgtatagaaaattatttaattgagatgacttgaattttttctaaaagtcctgttacttcatgctaaggatgcacttatttcatttacaggaatgtaaaactgtcaattttgtttcagaatctctctcacagtcacagtatggctgaggttggcaggggcctcacagggtctgtctgatccaaccagaggaactcagagaactcaaagcagaacacccagcaccacatccaggtggctcttaagagatctccagggagattccacagcctccctgggcaactttgcatgtgctgaagcactgagaagtacatttgaggacagtcaaatcaaagtcaactgcacaaataactgctcagtgtattcaaaaagtgaatatctgaaagctatgcagcctggtatgcactgttttcagtgctgtggacttgacgggtttatatcattcaggtttgtgtagcaaattatacaactgaattttgttttctcttccattctctcctctgttacatgtgaagcctgcctgatctctagtggtaggaaaaaatatccagacaaatcccttgataaaactgaagagacacgtcacctacgggcatatattctacccttagcttgcagggcttcctggacagtggcttttattcatcagtgcttttggatttgtcttaatggaaaaccaaatattggagaaacacacatttgattgtgaacacagttattcttacctaaaaagattaatgtaacctcgaagtagcagtacactgttcctgcgtttacagtggaaattaaatgaaaagattatgaaatgtttatgtaagatggaatttaaaaggaggaaatacagtgttgagataggtaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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