2024-06-29 20:55:02, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001008442 2956 bp mRNA linear VRT 19-SEP-2023 DEFINITION Gallus gallus solute carrier family 25 member 15 (SLC25A15), mRNA; nuclear gene for mitochondrial product. ACCESSION NM_001008442 XM_417080 VERSION NM_001008442.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 2956) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 2956) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AJ720668.1. On Dec 16, 2004 this sequence version replaced XM_417080.1. ##Evidence-Data-START## Transcript exon combination :: AJ720668.1, SRR13267658.25742.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02738224 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2956 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="1" /map="1" /breed="Leghorn" gene 1..2956 /gene="SLC25A15" /note="solute carrier family 25 member 15" /db_xref="CGNC:50873" /db_xref="GeneID:418886" exon 1..88 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" exon 89..196 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" exon 197..326 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" misc_feature 266..268 /gene="SLC25A15" /note="upstream in-frame stop codon" CDS 272..1177 /gene="SLC25A15" /note="solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15" /codon_start=1 /product="mitochondrial ornithine transporter 1" /protein_id="NP_001008442.1" /db_xref="CGNC:50873" /db_xref="GeneID:418886" /translation="
MRINSALQAAIDLTAGAAGGTACVVTGQPFDTAKVKMQTFPDMYKGIVDCFVKTYKQVGFRGFYKGTTPALVANIAENSVLFMCYGFCQQIVRRIVGVDRKTKLSDLQNAAAGSFASAFATLVLCPTELVKCRLQAMHEMQLSGKIVQGQSTVWSVVKSVIQKDGPLGFYRGLSSTLLREVPGYFFFFGGYELSRTFFASGRSKDELGPIPLLLSGGFGGSCLWIAVYPVDCVKSRIQVLSMAGKQTGFMGTFVTVVRTEGVLALYSGLKPTMIRAFLANGALFLAYEYSRKLMMKQIDSY"
misc_feature 284..553 /gene="SLC25A15" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" misc_feature 632..865 /gene="SLC25A15" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" misc_feature 884..1159 /gene="SLC25A15" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" exon 327..585 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" exon 586..723 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" exon 724..893 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" exon 894..1052 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" exon 1053..2941 /gene="SLC25A15" /inference="alignment:Splign:2.1.0" ORIGIN
gctttccccggggccgcggggtgccgcgccgccttccccggccgcctatataggggcggcggcggcggcggggcggttgggcgctgcggtccgagctctgggtttgctgtagaagcggcagagcagtcgttaactcggcatgtccgcgagcagtttgtaatagaatcgtgtaatcacaaagaagacacgggagtaggaggaaaacatcctgacaccttccaggaaactggagactttttacactgcaataatcaataaacaagtgtgaagcatgaggatcaactctgctcttcaggctgctattgacctcacagcaggagctgcaggtgggacagcctgcgtggtgactggccagccctttgacacagcaaaggtgaagatgcagacgttccctgacatgtacaaaggaattgttgactgttttgtgaaaacctacaaacaagtgggatttcgaggcttctacaaggggaccacgcctgctctggtagccaacattgcggagaactctgttcttttcatgtgctatgggttttgccaacaaattgtgagaagaattgttggagtagacaggaaaacaaagctcagtgacctacagaatgctgccgcgggctccttcgcctctgcctttgccacgcttgttctgtgccccacagagctggtgaagtgccggctgcaggccatgcacgaaatgcagttgtcgggaaagatagtgcagggacagagtacagtttggtcagtagtgaagagcgtcatccaaaaggacggcccccttggcttttaccgtggcctgtcgagcactttgctgcgggaagtccccggctatttcttcttcttcggggggtatgagctgagccggacgttcttcgcctctgggagatcgaaagatgaattgggacccattcctttgctgctcagcggaggttttggaggcagctgtctgtggatcgctgtgtatcctgtggactgtgtcaaatctagaattcaggttctttcaatggctggaaagcaaacgggcttcatgggaacgtttgtaactgtcgtgagaaccgaaggtgtacttgccttgtattctggactaaagccaactatgatccgtgcattcctggccaatggggcactgtttcttgcctatgagtacagccggaaactgatgatgaaacagatagattcttactgattccttctagcaaacagaacaaccctttaaataaatgatcaaaacctgtaggactcatcacgatctgagagcagtaccagatcactgacctgattttaggaactcagttccagtttaggatttgtaatcttttaaattcaagtgatttttatggagaggtatatgtgcttcttgaattggacgggcaggactgtctccatcttgcagattctgcactgggtatgctgtgcatcataaatgtctcttcctgcctgtaatggtgctaaaaagacatactggtttttaatgttacaggcagaacaggctgtagtttgttaaaggcaaagcactgctttagagcctgtgctgtgactgctccatttcccattccttgctggcaatatctgattccatgtaattccagtcttgtctaatcttagcgagtgtggctgtcattttctagctcccttctaccctgtgattttccaggatcattgcagctggttcctgactcgcatactctgacacactgatggccttacagaagctagaagcattcaccccccacttttactgtcttatgacctagagctgagatagggttgcattggagataaaatatgaagttactggatgtaaggagtcaatgcagcatttataacaattgtttgctgcaggcggtgctgaaatattataaatagcactgaattaaactaacataggagggctgctggaaacagctgcttgttcaaagcgcggagttgtaacgtgcaagctcacagttaggtcaccttggtggagatgagtccgtgtgcttgaaggacaggaagctgaagaggaacaaagccagagccaacttcttgaagacagccgacaccgtgggcttcaatctattctgactggagtcctgccacatgtgccactcgctgcagctcttcagctgagtggaaaacatttggtgtcttgggccattcacatcaccctcagtcctggagggcacatctgctttctcctggcatttgcttaaatacgcaacttaaggccagttagtgttgcccaaattgagactgtagcacctctttttctagttgctcccttccttttctttaagaagcagcctactgccaagcctggaagaagacaaagcaaatctcagtacagtgcagctcataactcaaacctggagttgttgagagatactgcctatgtgatggtgtaacatacccaccctttggacacgggcaagccaccctcttgtctagcagcactttgacccatcacatagaagttagcagcttgttacagcaaatagaacatgccagtaagtgacagttctatgctacagcctgtgtcatagccccagaaagaggaaaaagctgtagacacagaaaaacatctcactgcctcttgtgatggagccagagcacactcaaaggggctactaatggaaggtggttactgcaggtccacagaccctttttgcttcttcagccttcaggagcagcacaaaccgctcccacaaaaggggcagttacaaacagtgcatggctgaagaggctgtagtgtgtattgcaccactttacctcgactcactggtacatgtggcagtaacactgcacaaagtcagctctttaaaaggagctcatggcaaaggtttgaataactcaggtacaagggtaggatttcaagagtcctaagcttcctccttttcaaagctgtttatccaagagaaataataccagctttcatgattgtacgcagttgtaataaaggtaacagaatccaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]