2024-09-29 09:26:40, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001001752 1929 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus cytochrome P450 family 2 subfamily C member 18 (CYP2C18), mRNA. ACCESSION NM_001001752 VERSION NM_001001752.3 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1929) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 1929) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1929) AUTHORS Baader M, Gnerre C, Stegeman JJ and Meyer UA. TITLE Transcriptional activation of cytochrome P450 CYP2C45 by drugs is mediated by the chicken xenobiotic receptor (CXR) interacting with a phenobarbital response enhancer unit JOURNAL J Biol Chem 277 (18), 15647-15653 (2002) PUBMED 11867618 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000231.1. On Sep 23, 2021 this sequence version replaced NM_001001752.2. ##Evidence-Data-START## Transcript exon combination :: AJ430583.1, SRR12888532.306707.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992484 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-209 JAENSK010000231.1 4555874-4556082 210-372 JAENSK010000231.1 4556413-4556575 373-522 JAENSK010000231.1 4557073-4557222 523-683 JAENSK010000231.1 4557637-4557797 684-860 JAENSK010000231.1 4558242-4558418 861-1002 JAENSK010000231.1 4558601-4558742 1003-1190 JAENSK010000231.1 4559133-4559320 1191-1332 JAENSK010000231.1 4559805-4559946 1333-1929 JAENSK010000231.1 4560555-4561151 FEATURES Location/Qualifiers source 1..1929 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="6" /map="6" gene 1..1929 /gene="CYP2C18" /gene_synonym="CYP2C45" /note="cytochrome P450 family 2 subfamily C member 18" /db_xref="GeneID:414833" exon 1..209 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" CDS 30..1514 /gene="CYP2C18" /gene_synonym="CYP2C45" /EC_number="1.14.14.1" /note="cytochrome P-450 2C45" /codon_start=1 /product="cytochrome P450 family 2 subfamily C member 18" /protein_id="NP_001001752.2" /db_xref="GeneID:414833" /translation="
MLLLGAASVVLLVCVACLLSIVQWRKRTGKGKMPEGPTPLPIVGNILEVKPKNLAKTLEKLAEKYGPVFSVQLGSTPVVVLSGYEAVKEALIDRADEFAARGHMPIGDRANKGLGIIFSNNEGWLHVRRFALSTLRNFGMGKRSIEERIQEEAEHLLEEITKTKRLPFDPTFKLSCAVSNVICSIVFGKRYDYKDKKFLSLMNNMNNTFEMMNSRWGQLYQMFSYVLDYLPGPHNNIFKEIDAVKAFVAEEVKLHQASLDPSAPQDFIDCFLSKMQEEKDNPKSHFHMTNLITSTFDLFIAGTETTSTTTRYGLLLLLKYPKIQEKVQEEIDRVVGRSRRPCVADRTQMPYTDAVVHEIQRFITLIPTSLPHAVTKDIHFRDYIIPKGTTVMPLLSTALYDSKEFPNPTEFNPGHFLNQNGTFRKSDFFIPFSAGKRICPGEGLARMEIFLLLTAILQNFTLKPVISPEELSITPTLSGTGNVPPYYQLCAIPR"
misc_feature 222..1496 /gene="CYP2C18" /gene_synonym="CYP2C45" /note="cytochrome P450 (CYP) superfamily; Region: cytochrome_P450; cl41757" /db_xref="CDD:477761" misc_feature order(399..401,411..413,432..434,573..575,918..923, 930..935,942..947,954..956,1107..1109,1137..1139, 1143..1145,1212..1214,1320..1328,1338..1352,1359..1364) /gene="CYP2C18" /gene_synonym="CYP2C45" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:410207" misc_feature order(651..656,918..920,927..932,942..944,1131..1142) /gene="CYP2C18" /gene_synonym="CYP2C45" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:410207" exon 210..372 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" exon 373..522 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" exon 523..683 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" exon 684..860 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" exon 861..1002 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" exon 1003..1190 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" exon 1191..1332 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" exon 1333..1929 /gene="CYP2C18" /gene_synonym="CYP2C45" /inference="alignment:Splign:2.1.0" ORIGIN
gcactcagaagctcgtgcccacgtgggagatgttgctcctgggagcagcgagtgtggtcctcctggtttgtgttgcttgcctgctctccatcgtgcaatggagaaaaaggactggaaaggggaagatgcctgagggaccaactccccttcccatcgtagggaacatactggaggtgaaaccaaagaatttagccaaaacccttgagaagctcgctgagaaatatgggcccgtcttctcagtgcaactgggttcaactccagtagtggtgctatctggatatgaggcggtgaaagaagccttgattgatcgtgcggatgagtttgctgccagaggacacatgcctatcggggaccgggcaaacaaaggattaggcattattttcagcaacaacgagggatggttacacgttcggcggtttgctctcagcactctgcgcaactttgggatggggaagaggagcattgaagagaggatccaggaggaagctgagcacttgcttgaagagatcacaaaaacaaagagactgccctttgacccaacattcaagctgagctgcgctgtctccaacgtcatatgctccattgtctttgggaagcgatatgactataaagacaagaagttcctatctctgatgaacaacatgaacaacacatttgagatgatgaactcccgctggggacagttataccagatgttctcctacgttctggattatttgcccggcccacataacaatatattcaaagaaattgatgctgtaaaagcctttgtggcagaagaggtaaagctgcaccaagcctccctggatcccagcgctccccaggatttcatcgactgcttcctcagcaaaatgcaggaggaaaaagacaatcccaaatcacacttccacatgacaaacctgataacgtccaccttcgacttgttcattgctggaacggagacaacaagcaccaccacacgatacgggcttctgcttcttctcaaatatcccaagatacaagagaaagttcaagaagagattgaccgggtagtaggacgatcacgaagaccttgcgtggctgaccggacccagatgccctacacagacgcagtggtccacgaaatccagcgcttcatcactctcatccctacgagcctccctcatgctgtgaccaaagacatccacttcagagactacatcattcccaagggcaccacagtcatgcccctcctcagtactgcactctatgacagcaaggagtttccaaacccaaccgagtttaatcctggacatttcttgaaccagaatggcacctttaggaagagcgacttcttcattcccttctcagcagggaaacgcatttgccctggagagggcctggcacgcatggagatattcttactcctgaccgccatcctgcagaacttcaccttgaagcctgtcatcagccctgaggaactcagcatcacccctacactgagtgggacaggaaatgttcctccctactaccagctctgtgctatcccccgctgaggggcacaaaacctcactgctgtgctcctcagccagactgctcctttacacctccccaactcaaaccagtggcaggagcgttgccccaccaacccaaagcctccacatgacagcccgcagacaaagtcccaggcagatcaaacccggatactttgaacacctccctgaactgctcctcctcaccacagcgcagaaggtaatgatgcacctcactgcagtgacattctgtgcatgtgctccctgagcacagcagtcccactgaacagctgatttgctcacagctgtgactccatggctgtccatcccctgcttctagggctgtatgtgtcccacccagagcagcacactttgcacagtgactgtgttgcgtatgtgtatgctaatgacccaataaagagcaatctatttaggagga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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