LOCUS       NM_001082806            1822 bp    mRNA    linear   VRT 12-APR-2020
DEFINITION  Danio rerio zgc:161973 (zgc:161973), mRNA.
ACCESSION   NM_001082806 XM_679484
VERSION     NM_001082806.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC133820.1.
            
            On Mar 15, 2007 this sequence version replaced XM_679484.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC133820.1, BC124186.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505382, SAMEA4476730
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="2"
                     /map="2"
     gene            1..1822
                     /gene="zgc:161973"
                     /note="zgc:161973"
                     /db_xref="GeneID:556635"
                     /db_xref="ZFIN:ZDB-GENE-070410-13"
     exon            1..136
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    9..11
                     /gene="zgc:161973"
                     /note="upstream in-frame stop codon"
     CDS             27..1490
                     /gene="zgc:161973"
                     /codon_start=1
                     /product="uncharacterized protein LOC556635"
                     /protein_id="NP_001076275.1"
                     /db_xref="GeneID:556635"
                     /db_xref="ZFIN:ZDB-GENE-070410-13"
                     /translation="

MAKLTGLSEFLRTIRQGLDQTEQTARAEAQNGDCVRKRKSHVSNPLQTETSKTVFEESPNNWQENYLERLPSEIILKILSSLDASSLFNISFVNKRFHDLANSNALWSVLYASEIEKKKWRPRVSVAEGMRSTHAEGKPSGYWKKMLLKEMAGYKDTMWKTELKHKNPHTGMPALTEEVLRRLHIQWEITLTFRNGRESVYKQTHTFFEDSSVTVFWSNGCWPLMHNLDSLKLHGIMCRPVGAPGDKPRWRSLICKTATDKSVHWVFLGYDRLVKLLQFGKIIIGVWRGNWRIAFIMINLHFHKLIEKSLLGSRFCPYIPTEDNAVDPDCVRHGYTLHIVLHNPVRRIMCQRFSPLYTSRVGLQGEYVQLNAVDFSDSSEHMPVVRICLPWQAEGLKGNVERCCMMTLTVLDEAQRPFWCVSSPVRMSSNPRVVDVEYEGEQFIILYEDAEGKVKMTFVWMEEFQHFFLVQLFTVFSVAKVKKHFWG"

     misc_feature    225..362
                     /gene="zgc:161973"
                     /note="F-box domain found in F-box only protein 15
                     (FBXO15) and similar proteins; Region: F-box_FBXO15;
                     cd22093"
                     /db_xref="CDD:438865"
     misc_feature    order(234..236,246..248,255..260,267..272,282..284,
                     288..293,303..311,315..317)
                     /gene="zgc:161973"
                     /note="putative Skp1 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:438865"
     exon            137..232
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            233..337
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            338..568
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            569..766
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            767..890
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            891..973
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1107
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1229
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
     exon            1230..1789
                     /gene="zgc:161973"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cagcaggttagctcattgtactaatcatggctaagcttactggtcttagtgagtttctcaggactataagacaaggccttgatcaaactgaacaaaccgctcgagcggaggctcagaatggtgactgtgtgcgaaaacggaagagtcacgtgtcgaatcctttgcaaactgaaacgagcaaaactgtgtttgaagaaagccctaacaactggcaggaaaattatttggagaggttgccatctgagatcatcctcaagattctttcctctctggatgcctcctctctgttcaatatcagctttgtcaacaagcggtttcatgatctggccaacagcaatgctctgtggtctgtgttgtatgcttccgagattgagaagaagaagtggagacctcgagtaagtgtggcagaaggcatgagaagcacacatgcggaagggaaaccttcaggatactggaagaagatgctgctcaaggagatggcaggatacaaggacaccatgtggaaaacagagctaaaacacaagaacccacacaccggcatgccagctctcactgaggaagtgctcaggagattacacattcagtgggaaatcacacttacgtttaggaatggacgtgaaagtgtctacaagcaaacacacactttctttgaggattcatcggttactgtgttttggagtaatggctgctggccattgatgcacaatcttgatagcctgaagcttcatggaatcatgtgtcgacctgtgggagctcctggagacaagccgaggtggcgctctctgatctgcaagacagctacagataaatctgtacactgggtgtttcttggctatgacaggcttgtgaaattgctgcagtttggcaaaatcatcatcggcgtctggcggggcaactggagaatcgcctttatcatgatcaacctgcactttcacaaactgattgaaaaaagtcttcttgggtcaagattttgcccctacataccaacagaagacaatgctgtggaccctgactgtgttcggcatggatacacactccacattgtgcttcacaatccagttcgcagaatcatgtgtcagcgtttctccccactgtacaccagcagagtggggttgcaaggagagtatgtgcagctaaacgctgttgatttctctgattcttccgaacacatgcctgtggtgaggatctgtctaccatggcaagcagagggactgaagggaaatgttgagcgttgctgtatgatgactctgacagtcctggatgaggctcagcgccccttctggtgtgtgagttcacctgtgaggatgtccagtaatccgagagtggtggacgtggagtacgaaggtgagcagttcatcatcctttatgaggacgcggaggggaaggtcaaaatgacctttgtgtggatggaggagttccagcacttcttcttggtgcagttgtttactgtgttctcagtagccaaagtgaaaaagcacttttgggggtgaatgactttgattgtgctttgagctcgaagatcatttagaatatttttattttcctattttatttattttttgctctttgttgatggagatatctgaaatgttttgttgtggagtttcaagggcattaacgtttccaaatgaagaaaaaaaaacagcaaatctcaaagcacttaatttttcatcaatttaaaattggtaaatgttgtttacacacctttgtcatgttgtttctcattgtcaagaatgagaatatgtagcactgtttactatgcaaataaacttgcactgtagaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

//