2025-02-23 06:08:10, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS NM_001005771 2320 bp mRNA linear VRT 07-DEC-2024 DEFINITION Danio rerio homeobox C8a (hoxc8a), mRNA. ACCESSION NM_001005771 VERSION NM_001005771.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 2320) AUTHORS Sundaramoorthi,H., Fallatah,W., Mary,J. and Jagadeeswaran,P. TITLE Discovery of seven hox genes in zebrafish thrombopoiesis JOURNAL Blood Cells Mol Dis 104, 102796 (2024) PUBMED 37717409 REFERENCE 2 (bases 1 to 2320) AUTHORS Xue,S., Ly,T.T.N., Vijayakar,R.S., Chen,J., Ng,J., Mathuru,A.S., Magdinier,F. and Reversade,B. TITLE HOX epimutations driven by maternal SMCHD1/LRIF1 haploinsufficiency trigger homeotic transformations in genetically wildtype offspring JOURNAL Nat Commun 13 (1), 3583 (2022) PUBMED 35739109 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2320) AUTHORS Yamada,K., Maeno,A., Araki,S., Kikuchi,M., Suzuki,M., Ishizaka,M., Satoh,K., Akama,K., Kawabe,Y., Suzuki,K., Kobayashi,D., Hamano,N. and Kawamura,A. TITLE An atlas of seven zebrafish hox cluster mutants provides insights into sub/neofunctionalization of vertebrate Hox clusters JOURNAL Development 148 (11) (2021) PUBMED 34096572 REFERENCE 4 (bases 1 to 2320) AUTHORS Lu,J.K., Tsai,T.C., Lee,H., Hsia,K., Lin,C.H. and Lu,J.H. TITLE Pectoral Fin Anomalies in tbx5a Knockdown Zebrafish Embryos Related to the Cascade Effect of N-Cadherin and Extracellular Matrix Formation JOURNAL J Dev Biol 7 (3), 15 (2019) PUBMED 31336923 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 2320) AUTHORS Wang,J., Fei,F., Berberoglu,M.A., Sun,S., Wang,L., Dong,Z. and Wang,X. TITLE Csy4-based vector system enables conditional chimeric gene editing in zebrafish without interrupting embryogenesis JOURNAL J Mol Cell Biol 10 (6), 586-588 (2018) PUBMED 30063795 REFERENCE 6 (bases 1 to 2320) AUTHORS Thisse,B., Wright,C.V. and Thisse,C. TITLE Activin- and Nodal-related factors control antero-posterior patterning of the zebrafish embryo JOURNAL Nature 403 (6768), 425-428 (2000) PUBMED 10667793 REFERENCE 7 (bases 1 to 2320) AUTHORS Amores,A., Force,A., Yan,Y.L., Joly,L., Amemiya,C., Fritz,A., Ho,R.K., Langeland,J., Prince,V., Wang,Y.L., Westerfield,M., Ekker,M. and Postlethwait,J.H. TITLE Zebrafish hox clusters and vertebrate genome evolution JOURNAL Science 282 (5394), 1711-1714 (1998) PUBMED 9831563 REFERENCE 8 (bases 1 to 2320) AUTHORS Prince,V.E., Price,A.L. and Ho,R.K. TITLE Hox gene expression reveals regionalization along the anteroposterior axis of the zebrafish notochord JOURNAL Dev Genes Evol 208 (9), 517-522 (1998) PUBMED 9799433 REFERENCE 9 (bases 1 to 2320) AUTHORS Prince,V.E., Joly,L., Ekker,M. and Ho,R.K. TITLE Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk JOURNAL Development 125 (3), 407-420 (1998) PUBMED 9425136 REFERENCE 10 (bases 1 to 2320) AUTHORS Misof,B.Y., Blanco,M.J. and Wagner,G.P. TITLE PCR-survey of Hox-genes of the zebrafish: new sequence information and evolutionary implications JOURNAL J Exp Zool 274 (3), 193-206 (1996) PUBMED 8882497 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC080255.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC080255.1, EE693846.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505370, SAMEA3505371 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2320 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="23" /map="23" gene 1..2320 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /note="homeobox C8a" /db_xref="GeneID:449648" /db_xref="ZFIN:ZDB-GENE-990415-114" exon 1..689 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /inference="alignment:Splign:2.1.0" misc_feature 245..247 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /note="upstream in-frame stop codon" CDS 254..1006 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /note="homeobox gene C-8; homeo box C8a" /codon_start=1 /product="homeobox protein Hox-C8a" /protein_id="NP_001005771.1" /db_xref="GeneID:449648" /db_xref="ZFIN:ZDB-GENE-990415-114" /translation="
MSSYFVNPLFSKYKGGETLEPTYYDCRFPQSVARSHTLVYGHGAAAPGFQHPSHHVQDFFHHGTTGISNPGYQQNPCALACHGDATKFYGYEALPRQPLYGTQQEATLAQYPDCKSSNSTNPGEGQGHLSQNSSPSLMFPWMRPHAPGRRNGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALSLTERQVKIWFQNRRMKWKKENNKDKFPGQRGEAEAEAEEEGNEDGEAEEGEDKETEEKEESKE"
misc_feature 587..709 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /note="propagated from UniProtKB/Swiss-Prot (Q68EH7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 665..682 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /note="propagated from UniProtKB/Swiss-Prot (Q68EH7.1); Region: Antp-type hexapeptide. /evidence=ECO:0000255" misc_feature 701..871 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 869..1003 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /note="propagated from UniProtKB/Swiss-Prot (Q68EH7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 690..2294 /gene="hoxc8a" /gene_synonym="cb341; hoxc8; z-179; zgc:91832" /inference="alignment:Splign:2.1.0" ORIGIN
gtgcacgccatgatttgaggctgcaaaaggaaaggctggcgataggaagagagagagagagagactaagcgaaaggagctgaagtgggagctgcctcagattgtccgaaggggcagcatttctccatctagttccggttgctgtgtctgcgttgcatgccatttggaactgcaacaataggttgccaccattaggagaggagaatacatatattttttccaaacagactgactctttttaatgctagataaacatgagctcttattttgttaaccctcttttttccaagtacaaaggcggcgaaacattagagccaacttactacgactgcaggtttccacagagcgttgcccgaagccacacgcttgtgtacggacatggagcagctgcgccggggtttcaacacccgtcgcatcacgtacaggactttttccatcacggaaccacaggtatctccaaccctgggtatcaacagaacccctgtgcattggcatgtcacggagacgctacgaaattttatggatatgaagcccttccgaggcaaccgctttatggtacccagcaagaggccaccttagcgcaatacccagactgtaaatcgtccaatagcactaaccctggagaaggacaaggccacttaagtcaaaactcctctccgagcctcatgttcccttggatgcggcctcacgctcctgggagacgcaatggaaggcagacatacagccgataccagacattggagctggagaaagagttcctcttcaacccatacctcacacgcaagcgccgtattgaagtgtcccacgcgctaagcttaactgaacgacaggtgaagatctggtttcagaatcgccgaatgaagtggaaaaaagaaaataacaaagacaaatttccggggcagagaggagaggctgaagcagaggccgaagaagagggcaatgaagacggtgaagcggaggaaggagaagacaaggaaacggaagagaaagaggaaagcaaggagtgattttatggtcttttttatggttatatggcagatattgaagaggtctcacgaatgggaaatgaaagagaagacgcgccaattttattacaaacagttgggtcaaaaagtgagaaaatccccctccatacaaatgtacattgaaacctgcccaaagaaaaaaggcttcttttttaccaacacacgaagacttttaccattagcgaaatgtggatctgtgcattcgacaaattactcaaaagacagacctacaggaatacaataacccatcgttttatataggaaatgttagcagcatgaaaaacatattacggaatttgacattcatttcatacttgatgaatatgtctgggggttaaatggataagatgcaaccaactgaaataattgcatcagcttatcacctttaaaactattggtcttgtacataaaatcaagccacatcatgctgttacaacatacattacgaatcaaattgacagaaaaatatattatgtatttggtgtaacgttatttctacaatccgaatatggcaaaggtgtattagtgccatatacagagcaaagcgatggcaagtgtagaaaattcattctgtattacacacattatagattacttaactgttctttgttgttcttctatgtgagtgggcgaggatacagtttgtattttttcgatattttattggactcacaagagattgcaatcgtttgaaaatctcgtttgaagctacctaatcatgggaaatttgcaatatacatttctacctagagatttcatagactcttgtttttgtagtgtattaaacctaagttatgtaatttaccctttaaacacttatgattatcgagcattttgtcgtcttcggaagacacgaatagctcgaagccaatcttaactattttaaaagattgtatcacggcactacctaaaacaaagttttgctagaaagaatgaatttatttattctacgtgctgctttgttaaaaataattatacattttcccccaacaacttaaactgcctatagaaaatgcacatttatgtgtagttgaacaaacacgctgattactaccctaccttacttaaagaaagagagtcaatttatcgtgctggtgttatagcgtagattttgaattgcactgagtataatcttcatgtacgtcttgttatatcttgctgttatcaatatgctcgttttacttgtgttcctcgtgtgaatataaacaaattcgtgtgtccacgccattgttgttgaaatcaacaagaataaacaagatggctcattctaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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