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2026-03-04 14:21:32, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Ciona intestinalis intermediate filament protein IF-A (if-a), transcript variant X2, mRNA. (2027 bp)
Annotation Date :: 01/16/2026 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2027 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="9" /geo_loc_name="France:Roscoff" /collection_date="2018-11-26" gene 1..2027 /gene="if-a" /gene_synonym="Vim" /note="intermediate filament protein IF-A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 147 ESTs, 96 long SRA reads, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 58...
Synonym: Vim
XM_078632656.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis intermediate filament protein IF-A (if-a), transcript variant X1, mRNA. (2051 bp)
Annotation Date :: 01/16/2026 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2051 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="9" /geo_loc_name="France:Roscoff" /collection_date="2018-11-26" gene 1..2051 /gene="if-a" /gene_synonym="Vim" /note="intermediate filament protein IF-A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 201 ESTs, 96 long SRA reads, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 58...
Synonym: Vim
XM_078632655.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis intermediate filament protein IF-A (if-a), mRNA. (1884 bp)
AJ298329.1. ##Evidence-Data-START## Transcript exon combination :: AJ298329.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1884 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="9" /map="9" gene 1..1884 /gene="if-a" /gene_synonym="Vim" /note="intermediate filament protein IF-A" /db_xref="GeneID:445691" exon 1..14 /gene="if-a" /gene_synonym="Vim" /inference="alignment:Splign:2.1.0" misc_feature 8..10 /gene="if-a" /gene_synonym="Vim" /note="upstream in-frame stop codon" exon 15..165 /gene="if-a" /gene_synonym="Vim" /inference="...
Synonym: Vim
NM_001032509.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/en/ci/symbol%3aVIM
lang : en | div : | spe : ci | query_string : symbol:VIM | format : html | download : 

0.000 | 0.000 | search_start;
0.074 | 0.074 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(full_search:symbol,synonym:VIM)?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.086 | 0.011 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(full_search:symbol,synonym:VIM)?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.086 | 0.000 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]