LOCUS       XM_026838760            4872 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis deleted in lung and esophageal cancer
            protein 1 (LOC100187070), transcript variant X3, mRNA.
ACCESSION   XM_026838760
VERSION     XM_026838760.1
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004190433.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4872
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="Unknown"
     gene            1..4872
                     /gene="LOC100187070"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:100187070"
     CDS             52..4404
                     /gene="LOC100187070"
                     /codon_start=1
                     /product="deleted in lung and esophageal cancer protein 1
                     isoform X3"
                     /protein_id="XP_026694561.1"
                     /db_xref="GeneID:100187070"
                     /translation="

MSKETVNNLTVSGDGSTKFHKKCMNQLHQVHLDHKKKLEEFNAVERQIMQARAQAVTADERALNKLSSPVGCETYEKLGLPSVPSNFQWCLDESTIKKHKLLVPTDFFGSHRQSGESPKRRKTPHFSLPTVSSSLHILNEPVDDGYTDLKEEKSNMVLLEEQSLTTLSSDSAELVSIPPQQKIKSKKKKSKQDKWREEMNHGARIEERSLLARLDERHNFLKNPRFIPLDESSGGKLLTKIHPKQVVVKAGREITQDVASAECIQVFASNPGVVQFNEWIVGRVYEVNLELRNISTVSRQLRVLPPKSSYFSLGLGKFPGQHGVVAPGMCAQYSVRYMPDALADADDHLEVISQSEEPLIVPIKAHRIPPVLVVSKTIDCGFCLVGGVKVVDLPLKNIGGNGRFCILKSTSWPAANFKTVVNPSCLDLGVFQIRPAVFEVLASQVTTLELLFSPQQATTYKEELVIVCDNCQVQYVTIQGHGESAAVELVSVSNNEEEVEVVGEITDRTADHLIRFPPLNPHSYFMRQIIVHNSTNVEMPYTWHILKPNLSPGLESLSSSKSSDVEKLDFFPDPESCFYIEPRSGFFQPNAIHEFVLTFAPDKVGNYNNTLHLVLSDIPESQNIDEPTSAGGVKPNIKRLASENAVDDKLNVNKPESNNHARAAIQGKQISNSLPALSEVIAMEIETKASCVPYSVVLHPPAVIMPGSILVGTTVKRPLQMANYSLAPINFKWDCVTSPNIVEVEPAIGMINPGDVAQLQVTVTGLNPGLLSCNVLCNIQHQSNPISIVVSSQIRGPNVVIDNVSIDFGLIKVGSKATQKLYIRNTTQLNASWKLNKSLVDSKAIGITPSSGELPSLAKQEVTVTFNPMTPSSLNTTITLDVEGGESSSVAVKSEVQNTQVCFEECLVVLKETFVSVPQTSSVVLLNQTLFPTKFSFQELKGKQSEFCDVTVFPNKGILGPHERLELQVTFQCREVVEINEVYLPCYIEEMKNPIVLGFYSNVNALSVTYATPCANCEDLKLDFVDVEVSSIQTLQVVLTNLTAIRAPWSAYVTNFFYKPSAPHPPPQNFKSVKSRRAMLGRTPNLADPLAKTNAQTIADKCKRVLSSGLGAAFLLDPPSGKLGPYQSQVINISAYNNMWGKYEDTFVCDVEGLESQLIPISMNVIGCPLKFQIANQSNEGTVLRYGTHLDGDAPVARKVRINNTSCCDVRIDWQTFNYPEPSDHKLVDLNIWFGEAFPSKQQETKPHTSETNCSTTPEKNNLVRVRIESHDGQKSNVPFHIEPDQIVIPAQSHNSVSVMFQPTLGTNCDTVMEKAWNSFALGYLTICSNTTNNNTVIREDKYDVDPMRLEMTSFVRIGQLSIEADDDDDDCDFIVPMHQLLCDRNERTKLRSISLTNFTETCLSFGLSLKSPFFFRSSVMSQECQNLARNRLNPQSNIKLCFAFFVASV"

     misc_feature    2461..2721
                     /gene="LOC100187070"
                     /note="Abnormal spindle-like microcephaly-assoc'd,
                     ASPM-SPD-2-Hydin; Region: ASH; pfam15780"
                     /db_xref="CDD:464865"
ORIGIN      

gtatctcatatacttgctggtgtatttcatgatctttacaccaaagaagtaatgagcaaagaaacagtgaataacttgacagtttcaggtgatggaagtacaaagtttcacaagaagtgcatgaatcagctgcatcaggtgcacttagaccataaaaaaaaactggaggaatttaatgctgttgaacgtcaaattatgcaggctcgagctcaagctgtaacagctgatgagcgtgcattgaataagttgtcttcaccagtgggttgtgaaacttatgaaaagctgggtcttccttcagttccttcaaacttccagtggtgtttggatgaaagtacaataaagaaacataaactacttgtaccaacagacttttttgggtcgcatcgtcaatctggagaatcgccaaaacgacgaaaaactcctcacttctctcttccaactgtttcatcatcgcttcacattctcaacgaacctgtagatgatggttatactgatttaaaagaagaaaaaagtaatatggtcttattggaagagcaatccttgaccactctttcaagcgattctgctgagctcgtcagtattcctcctcaacaaaagatcaaatccaagaagaaaaagtcgaagcaagataagtggagggaggagatgaatcatggagcacggattgaagagcggagcttgttggctcgacttgatgaaaggcacaacttcttaaaaaatcctcgttttattccattggatgaaagtagtggtggaaagttgcttacaaagattcatccaaaacaagttgttgttaaagctggaagagaaatcacacaagacgtagctagtgctgagtgcatacaagtctttgcctctaatccaggtgttgttcaattcaatgaatggattgtgggtcgtgtgtatgaggttaacttggaacttcgtaatataagcactgttagcagacagttaagagtacttcctccaaaatcttcgtatttttcgcttggtttgggtaaattcccgggccaacacggtgtagttgccccagggatgtgcgctcaatacagtgtacgttatatgcctgatgcattagcagatgcagacgatcacttagaggttatttctcaatcagaagaaccgcttattgttcccattaaagctcacagaataccaccggttttagttgtgtcaaaaaccatagattgtggtttttgtttggttggtggtgtgaaggtagttgacttaccactcaaaaatattggcggcaacggacgtttctgtattttaaaatcaacttcatggccagctgccaactttaagactgtagttaacccaagttgtcttgatcttggggtgtttcaaattcgtccagcagtatttgaggtattagcaagtcaagtcaccacactggaacttctattttccccacaacaagcaactacttataaagaagaacttgtcatagtgtgtgacaactgtcaagtacagtatgtgacaattcaaggtcatggtgagtcagcagctgttgaattagtcagcgtctccaacaacgaggaggaagttgaagttgttggtgaaataacggatcgaacggctgatcacctgattcgattcccacccctcaatccacattcatacttcatgagacaaatcatcgtccataactcaacgaacgtagagatgccatacacgtggcatatcttgaaaccaaacctttctcctggtttggaaagtctgtcttcttcaaaatcgagcgatgttgaaaagttggatttttttcctgacccggaatcttgtttttacatcgaaccaaggagtggattttttcaaccaaatgcaatccatgagtttgtgttaacattcgcaccagacaaagttgggaattacaacaacacccttcaccttgtgttaagtgatatacctgagtcgcaaaatattgatgaaccaacatcagcgggtggtgttaaaccaaatataaaacgacttgcgagtgaaaacgctgttgatgataaattaaacgtcaacaaacctgaatcaaacaaccatgcaagagctgcaattcagggaaaacagatttccaacagtttaccagcattaagtgaagttattgccatggaaattgaaaccaaggcctcttgtgttccttactccgttgttttacatccacctgctgtgataatgccaggcagcatattggttggaacaacagtaaaaagaccgctgcaaatggccaattacagtttggctccaatcaatttcaaatgggattgtgtgacaagcccaaacatagttgaagttgaaccagctattggtatgatcaaccctggagatgtagctcaactacaagttacagtgactggtttgaacccaggcttactgtcttgtaatgtactttgcaacatacaacatcaatctaacccaatttcaattgtggtttcttcacaaattaggggacctaatgttgtcatagataacgtttcaattgattttggattaatcaaagttggatcaaaagcaacacagaagttgtatattcgaaacacaactcaactaaatgcatcttggaaactaaacaaatcattagttgacagtaaagccattggaatcaccccatcaagtggtgagctaccatctctagcaaagcaagaggtcaccgtgacctttaaccctatgaccccaagttcgctaaacacaacaatcacccttgatgtggaagggggtgaaagttcaagtgttgccgtcaaatctgaggttcaaaacacacaggtttgctttgaagaatgcctggttgtcttaaaagaaacatttgtatcggttccacaaacaagttctgttgtacttctcaatcaaactttgttcccaaccaagttttccttccaagagttaaaggggaaacagtcagagttctgtgatgtcacagtcttcccaaataagggcatccttggaccacatgaaagacttgaactgcaggtcacttttcaatgtagagaagttgtggaaataaatgaagtttatcttccatgctacatcgaagaaatgaagaatcctatagtgttgggtttctacagcaatgttaacgcactatctgtgacttacgccacaccatgcgcaaactgtgaagatctcaagttagattttgttgatgttgaagtatccagtatccaaacattgcaagttgttctcaccaaccttacagccattcgtgccccatggtctgcttatgtaactaacttcttttacaagcccagcgcaccccacccgccaccacagaactttaaaagcgtcaaatcgcgacgtgcaatgttgggtcgaactcctaacttggccgacccacttgctaaaactaatgcacaaacaattgcagataaatgcaagcgagttctcagcagtggacttggagcagctttcttacttgacccaccaagtggtaaacttggtccttaccagtctcaagttatcaacatatcagcgtataacaatatgtgggggaaatatgaggatacttttgtttgcgatgtggaaggtttagaatcgcaactgattccaatcagtatgaatgtgattggttgtccactcaagttccagatagcaaatcaaagtaacgaagggacagtgttgaggtatggaacacatcttgatggggatgctccagttgcaaggaaagtccgaatcaataatacaagttgttgtgatgtgagaatagattggcaaaccttcaactaccctgaaccatctgatcataaactggttgatctgaacatctggtttggtgaagcttttccatccaaacaacaagaaacaaaacctcatacgtcggaaaccaattgttccactacgcctgagaaaaataatttggtaagagttcgtatagaatcacatgatggacagaaatcaaatgtcccgtttcatattgaacctgaccagattgttataccagcacaaagccataactcggtatcagtaatgtttcaaccaactttgggtacaaactgtgatactgtgatggaaaaagcttggaattcatttgcacttggatatttaactatatgttccaacactacaaataacaacactgtgatacgagaagataaatatgatgttgaccccatgagattagagatgacatcatttgtccgtatcggtcaattatctatagaagctgatgatgatgatgatgattgtgactttattgttcccatgcaccaactactctgtgatcgcaatgaaagaactaagttgaggtcaatctcactgaccaacttcacagagacttgcctctcgttcggtctttcattgaaatctcctttcttcttccgatcttctgtgatgtcacaagaatgccagaatcttgcaagaaacagattaaatccccaatccaatattaagctttgctttgcttttttcgttgcaagcgtatgaaaaagagaaaatattcttctacaactggtgaaacaacgttacctattaccaacagtgacgaacatgtccgtgagcgaaacagctacaccagtacaacacaggtcggaatatacaatgttgacacgacagaaacgaagaacaaagaacgtccattaccgctcgttgataacgtatttgaagatgatcacgaatacaatgtaatagattcagcggagcaggtgtactgtttgtgtgacaacgaaccagtcaatgacaatgtgaataatgaagatacaatggatgccactcgcccataccagcattaccaatcgccgacgtctctaaatatgatgactcctctcacggacacgactgatattgacagcacgaacccttaccacgtcccaagatccctctctatatctagccctcctttagttaatataggcggtgaaaatgaaccccattatcaaattccacgcaagtcaa

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