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2024-11-22 15:09:23, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Caenorhabditis elegans Protein suex-1 (suex-1), mRNA. (413 bp)
org REFERENCE 4 (bases 1 to 413) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA aaatgcaatctcttcttgtattctgtcttgccacaattattctatcaaacttcacagaggcttctgcagatttggagacagcttcacaaagtctgaagcatccgaggaatttgggatggaaggctcctgaaggacatcgcgaaaaacgatatggtggatggggaggtggatatccctacggcggctacggtggatatggtggaggttacggtggcggatatggaggcggatacggaggagggtatggcggacgatatggcggaaactatggaagcagctcatggggatcatattcgagttatagttctggtggatacag...
position 6
NM_062648.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Sex determination protein fox-1 (fox-1), partial mRNA. (1023 bp)
tttggtgtggtttccgacgtagaaattattttcaatgagcgaggatcaaaggggtttggatttgtgacaatggagagaccgcaggatgctgagagagctagacaagagcttcatggatcaatgattgaaggacggaaaattgaagtcaactgcgctacagctcgtgttcactcgaagaaagttaaaccaactggaggaatcctggaccaaatgaacccactgatggcccaatcagctcttgccgcacaggctcagatgaacagagccctattgctccgtagtccattggtagcacaatctcttcttggtcgcggagccgctttaatccccggaatgcaacagcccgcgttccaattgcaagcggctttggctggcaatccgctggcacaacttcaaggtcaacctttgctgttcaacgctgcagcccttcaaacgaacgcactccaacagtcggcgtttggaatggatccggccgccgttcaagctgctctgcttgccaatgagcaagctcggtttcaactcgctgctgccgctgctcaaggacggatcccatcatctggaaatgcctcggcgtttggcgaacaataccttagcaacgcg...
position 643
NM_001330896.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Sex determination protein fox-1 (fox-1), partial mRNA. (1290 bp)
tttggtgtggtttccgacgtagaaattattttcaatgagcgaggatcaaaggggtttggatttgtgacaatggagagaccgcaggatgctgagagagctagacaagagcttcatggatcaatgattgaaggacggaaaattgaagtcaactgcgctacagctcgtgttcactcgaagaaagttaaaccaactggaggaatcctggaccaaatgaacccactgatggcccaatcagctcttgccgcacaggctcagatgaacagagccctattgctccgtagtccattggtagcacaatctcttcttggtcgcggagccgctttaatccccggaatgcaacagcccgcgttccaattgcaagcggctttggctggcaatccgctggcacaacttcaaggtcaacctttgctgttcaacgctgcagcccttcaaacgaacgcactccaacagtcggcgtttggaatggatccggccgccgttcaagctgctctgcttgccaatgagcaagctcggtttcaactcgctgctgccgctgctcaaggacggatcccatcatctggaaatgcctcggcgtttggcgaacaataccttagcaacgcg...
position 910
NM_001330894.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans putative amino acid transporter skat-1 (skat-1), mRNA. (1732 bp)
gacaaactacccgccgctacgaacttcaccgggacaattactatgattggaatgagcatgtacgcatttgaaggtcaaactatgattctaccgattgagaataaacttgataacccggccgctttcctcgccccattcggagttctgtcgacaactatgatcatttgtactgcattcatgacagctctcggatttttcggatacactggatttggagattctattgctccaacaatcacaacgaatgtaccaaaagaaggtctttattcaacagtaaatgtattccttatgcttcaatctcttcttggtaattccattgcaatgtacgtcgtctacgatatgttcttcaatggattccgtcggaaattcggtgcccgattcccaaatgttccaaagtggctgtcagataaaggattccgtgtcttctgggtgcttgtcacgtatcttatggcagttttgattccaaaacttgaaatcatgattccattagtcggagttacaagtggtgccctgtgtgctttaattttcccaccattcttcgaaatgatcaccttctggaccgattggaagggacttctgacatatcgtcaacgtatgaca...
position 973
NM_066588.7 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Sex determination protein fox-1 (fox-1), mRNA. (1809 bp)
tttggtgtggtttccgacgtagaaattattttcaatgagcgaggatcaaaggggtttggatttgtgacaatggagagaccgcaggatgctgagagagctagacaagagcttcatggatcaatgattgaaggacggaaaattgaagtcaactgcgctacagctcgtgttcactcgaagaaagttaaaccaactggaggaatcctggaccaaatgaacccactgatggcccaatcagctcttgccgcacaggctcagatgaacagagccctattgctccgtagtccattggtagcacaatctcttcttggtcgcggagccgctttaatccccggaatgcaacagcccgcgttccaattgcaagcggctttggctggcaatccgctggcacaacttcaaggtcaacctttgctgttcaacgctgcagcccttcaaacgaacgcactccaacagtcggcgtttggaatggatccggccgccgttcaagctgctctgcttgccaatgagcaagctcggtttcaactcgctgctgccgctgctcaaggacggatcccatcatctggaaatgcctcggcgtttggcgaacaataccttagcaacgcg...
position 829
NM_001330895.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Putative zinc finger protein R05D3.3 (R05D3.3), mRNA. (1815 bp)
tctacgataccgatgtagccaagcagaccgagttgaaaattgtgaaagacgaagaaggaggtgttccgacgatgtcgataaaactggaggaaggatttgagatcaatttagaggatttgatgaagatggttggagctggaagttcgatcactgattcaaatgaacctgggcccagtgagatcaagaaggaactagccgaagtctgaaaccatttatttctaaatttttgtctatttttcttttaaattcatcctgtagtcttcaatactcccatatgaaaggccacacattccccaatctcttcttgtatcatttccatattggacaactttttgtttttccaatttcacctcccattgttcaaataaatattgtatcaaaaaatgactcactgctattccagaataaaatgaacaca
position 1692
NM_001392155.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Pyruvate carboxylase subunit B (pyc-1), partial mRNA. (1851 bp)
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA atgatcactgatactacattcagagatgcacatcaatctcttcttgcaacacgagtacgtacctatgatatggctgctatttcaccttttgttgcccaatcattcaatggtctcttctcacttgaaaactggggaggagctactttcgatgtttccatgcgcttcctccacgagtgtccatgggaacgtcttcaaactcttcgcaaactgattccaaatattccattccaatgtcttctgcgaggtgccaatgctatgggatattcaaattatcctgataacgttatttacaagttctgcgagttggcggtgaaaaatggaatggatgtgttccgtgtatttg...
position 34
NM_001380776.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Pyruvate carboxylase 1 (pyc-1), mRNA. (3888 bp)
acgtatttcattgatgagcatccagagttgttccaattcaaaccaagccaaaaccgtgctcaaaagttgttgaactatttgggagaagttaaggtgaacggtccaactactcctcttgctactgacctgaaaccagcagttgtttctcctccgatcccatacatcccagctggagccaaaccgccgactggacttcgtgatgtacttgttcaaagaggaccaactgagtttgcaaaggaagttcgcagtagaccaggatgtatgatcactgatactacattcagagatgcacatcaatctcttcttgcaacacgagtacgtacctatgatatggctgctatttcaccttttgttgcccaatcattcaatggtctcttctcacttgaaaactggggaggagctactttcgatgtttccatgcgcttcctccacgagtgtccatgggaacgtcttcaaactcttcgcaaactgattccaaatattccattccaatgtcttctgcgaggtgccaatgctatgggatattcaaattatcctgataacgttatttacaagttctgcgagttggcggtgaaaaatggaatggatgtgttccgtgta...
position 1724
NM_001383412.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/en/ce/comp%3acaagaagagattg
lang : en | div : | spe : ce | query_string : comp:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.079 | 0.079 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Caenorhabditis elegans?to=0&format=json
0.098 | 0.019 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Caenorhabditis elegans?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.099 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]