GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-11-22 23:56:50, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Arabidopsis thaliana transcription factor/transcription regulator (AT2G18969), partial mRNA. (575 bp)
atacgtgagtcacttggttccagctcttaaaaagatcaacatgaacaaatcctcttcaaaaaccaacaaacaaagtttagaacaaaccgtgaaacatgaagtagacatggctttcgcattgtctgctcaagaattcgcgtggagccgtttcttgcaacagaagctattatcttccccttatgatgatccaattagcactagtagttctccttccgagattctagaaagatcgagcaagagacaaggtggagaaaaacaccaagacagcgacgaagaagaagaaggaggagagatcaagaagagattgaaggaattgcagaagcttttgccaggtggagaagagatgaacatggaggagattttgagtgagattggaagctacattgtatgtcttgaattgcagatgattgttttaaaatctattgtacaagataatacttcttgaatataatataattcattgtttcttctcttcaatatgataaggcgaat
position 378
NM_001124873.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana LOB domain-containing protein 33 (LBD33), mRNA. (699 bp)
aaaatggcaagtcatggatcatcttgtggagcatgcaagtttctaaggaggaaatgcaaccgcgactgcgtcttctcgccttacttcagctacgaacaagcctcttcccatttcgcagcggttcacaaagtcttcggcgcaagtaatgtctctaaacatttgcttcatttgcctcaacatcaaagaaacatcgctgctatcaccatctcctacgaggctctctctcgcatgcgtgatcctgtttatggctgcgttgctcacatcttcgctcttcatcaacaggttgtgactttgcaagaagagattgagtttctcgggtcacagatgaagaatttttcatactctaatcaaaacggatcacaacttaacaacataccggagtttgtgaatcagatgactatggccacgaccaatttcgtcgacgagagtgttttgaacaatgccgacggaagaaactgctatgatgggttcttcacgaactcagaggaaatgctcgtgaatcatcaatggctccagaacatggattattattactaagcacaacaaaattcgacgcgaactaaaaacgatggatctatatataatagttgtggagcatgg...
position 332
Synonym: K16F4.4; K16F4_4; LOB domain-containing protein 33
NM_120690.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RmlC-like cupins superfamily protein (AT1G50590), partial mRNA. (752 bp)
acgccaacaatgtatttagacttcactctctcgccgggttctcgaatctctcaacccattccacttcactggaacgcgtttgtctatgttcttcaaggccatggtcactttggggattccaagttacaacattcagccgctgctgcgcaccacttgctggttctaggcctaggtggtgacatgttagaggcttggaacggttctgattccggtttgcctcttcggtttatccttgtggctggtgagcctataggtgaaccaatggttcagtttggtccttttgttatgaacacacaagaagagattgatgagaccattgacgactttgagaattttagaaatgggtttgaaaaagctagacattggaagtctcaagctgcttctgccttgggactgttctga
position 645
Synonym: F11F12.9; F11F12_9
NM_001333444.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RmlC-like cupins superfamily protein (AT1G50590), partial mRNA. (1079 bp)
acgccaacaatgtatttagacttcactctctcgccgggttctcgaatctctcaacccattccacttcactggaacgcgtttgtctatgttcttcaaggccatggtcactttggggattccaagttacaacattcagccgctgctgcgcaccacttgctggttctaggcctaggtggtgacatgttagaggcttggaacggttctgattccggtttgcctcttcggtttatccttgtggctggtgagcctataggtgaaccaatggttcagtttggtccttttgttatgaacacacaagaagagattgatgagaccattgacgactttgagaattttagaaatgggtttgaaaaagctagacattggaagtctcaagctgcttctgccttgggactgttctga
position 972
Synonym: F11F12.9; F11F12_9
NM_103941.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana sterol O-acyltransferase, putative (DUF1639) (AT3G03880), mRNA. (1178 bp)
ccaaagagatgccctaaaggcatataaaccacctttacctcccattttacagagtcggtagatagagagaaagacgcttctggtcagttttcgttaaacccgccggagaaactagcgactacggtggtcgaacccgtctgacgtcgtagaattcatcgtaatcttcacttcctttcttccccgacaaaatcatcgatctgtgtttgccaatcagattcaccggaacttctagttaggacgattgtgaaaaatgtcgtcatcgttagaacaagaaatcttcttacagtggggaaacaagaagagattgagatgtcttagagccaaagccaaaaagatctctcgttctaaaaactcttctcgctttctaggtcaagataccgtcctccttcaatcctctagattctccagaggatcagaaggagcaatcctcagatctggactaccagatcgccggagaccgtctccggagaaagaggagaggtattatactacgagaggtgtagtggataacattgggaaagattgtttagatggaaacatcaatggagaagatagcaacaacaaggaagagagtatgtggcctaagctctttataacatt...
position 311
Synonym: F20H23.7; F20H23_7
NM_111259.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana redox responsive transcription factor 1 (RRTF1), mRNA. (1385 bp)
aagggctaaactcaacttcccctttgtggattacacgtcttcagtttcatctcctgttgctgctgatgatataggagcaaaggcaagtgcaagcgccagtgtgagcgccacagattcagttgaagcagagcaatggaacggaggaggaggggattgcaatatggaggagtggatgaatatgatgatgatgatggattttgggaatggagattcttcagattcaggaaatacaattgctgatatgttccagtgataaatgagctctttcttgttggcgttttttggagttaagtgcaagaagagattgacactgtggcttgtttaaagtgaacaagaacaagaaagcatgtaattagtagtctcattcttttgtttgtggtcaattctatgtttatctcatataaaatctgagttaaacctatctgaggagagagtaaataaagaggttaagaaacccaacattggtctgaattataaacgtaagtgtcaacgttgtttataaaggagaaaactataattggtgacaaaagacataaagaaaagatgtctactcctacaaagcatcgcgtgcagctattcgacaaacaatggcatctccca...
position 965
Synonym: redox responsive transcription factor 1
NM_119606.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RmlC-like cupins superfamily protein (AT1G50590), partial mRNA. (1452 bp)
acgccaacaatgtatttagacttcactctctcgccgggttctcgaatctctcaacccattccacttcactggaacgcgtttgtctatgttcttcaaggccatggtcactttggggattccaagttacaacattcagccgctgctgcgcaccacttgctggttctaggcctaggtggtgacatgttagaggcttggaacggttctgattccggtttgcctcttcggtttatccttgtggctggtgagcctataggtgaaccaatggttcagtttggtccttttgttatgaacacacaagaagagattgatgagaccattgacgactttgagaattttagaaatgggtttgaaaaagctagacattggaagtctcaagctgcttctgccttgggactgttctga
position 1345
Synonym: F11F12.9; F11F12_9
NM_001333443.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RING/U-box superfamily protein (AT1G14180), mRNA. (1604 bp)
ttagcgaaagggtctatcgagtgaatagaagttaaagtatgggttcgctctgttgtgtagctgcgaagtcagatagatcaaattctacaagtggggacttttcatttggcctgcatgagccttattggaggactaatacaagtttctctcctccttcatcgagatgggacgtccatggattaatggatggtattagctgttatggatcttccacatcatcaaatgctaatgttcttcgtagtcccgacctttctcaagctcttcattggacacctaacgattttgaatctgctacaagaagagattgttaagcaactaccaggtacatcaagaaatgtcggtattggtgactctgaacctggtcgtaactcctcaagccggcgctttttcttgtctaagccggttcatcctatactgcatccttctgataatgttagggatacagcatctgattctgcggatgcctgcagttggagcagcgggaccccaagcagcattgattctgtggatgttcctgagccagttcttgattggaataataactctaccaaagcacaacaagtagcagcttcaagtacatttaaatgcggactgtgtaac...
position 584
Synonym: F7A19.26
NM_202092.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana CBS domain protein with a domain protein (DUF21) (AT4G14240), mRNA. (1625 bp)
agcagtcacatggctgcagttgtgaaggttaaggggaaaagcaaagtcccaccttcaactttgcttgaagaacacactgatgaaagcaatgactccgacttgactgcacctttgttactaaaacgagagggaaaccatgacaatgtcattgtcacaatcgacaaggctaatggacaatctttctttcaaaacaacgagagtggacctcacgggttttcacatacttcagaggctatcgaggatggtgaggtaattggtatcatcactttagaagatgtctttgaagaacttttgcaagaagagattgtggatgaaactgatgaatatgttgacgtacataaaaggattcgagtagcagcagcagcggctgcttcatcaatagcgagagctccttcaagccggaagttgcttgcgcaaaagggaactggaggacaaaataagcaagggcagacgaataaagttcctggtcaggaacaagataaaatgcttggaactattaccgagccgattcgaagaaacaactgatgttgtgttcttgcttaaggaggcaaaaactctgttgcggtataaagaaagaaaacaaagaataaattataagat...
position 1030
Synonym: DL3160C; FCAALL.149
NM_001340909.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana SNARE-like superfamily protein (AT4G27840), mRNA. (1689 bp)
atggctattcaatcgattgaaatcagctacagagtctctaatggaagacggatctactgcggattcgttggataatccgactcaacactgtctccaatcaaagctagatccagttttcgctgagattgctgctattggtggtaatcataataaggatttggaattggagtttggatcaccgaggagtatagcgagggagattaagagtaataatcagagtttggattcgtccaagggacgaaaaggcggtgcgttgatgccgcttttaggaaagccgttgagggtgttgaagaacaagaagagattgcagacggaagcgaaaagtgaaggtcattggaatgagaagaagatggacctaggaggaggaggtaaaggagtgaggaatggtttgattcatgatcatcatcatagacaaaaggcaaaacagatatggaggaaacatgtttggattgttttgatgtttgatctctgtatctgccttgttctctttggaatctggctttggatttgtcaagggtttcaatgcatcgatgggtaattatcttcgatcatctaagttatgtgtggttgaatgtttaaaaaaaatatccgaggtgttgt...
position 1097
Synonym: T27E11.80; T27E11_80
NM_118922.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ankyrin repeat protein (AKRP), mRNA. (1706 bp)
aggtgcgaccttgatgcactatgctgtgcaaacagcatcagctcccacaataaaacttctcctactgtataacgctgatataaacgctcaggacagggacgggtggactccactgcacgttgcagtacaggccagaagaagcgacattgtaaagcttcttttgataaaaggggcggacatagaagtgaagaacaaggatgggttaactccgcttgggctttgcctctaccttggaagagagataaggacgtatgaggtgatgaagctgttgaaagagtttccacttagcagacacaagaagagattggtaacaacagatgaagatattgaatagtcctttcaatttcagcttgaagtacactcacttatgagaacctgagaaaaggagatggaggtaaaggtgatgattagggcattggaacctcggagtcggagtgggtccactgtctcacttccttaaatttggtttgctgttagtcttatccatcgattttggatatttatcacaacttgatccattcttaaagaaaatatctgaaaataaataaaaagtaatacatatatatatatatatatattatttataacagtctgtgaatg...
position 1398
Synonym: ankyrin repeat protein; EMB16; EMB2036; EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036
NM_126003.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ankyrin repeat protein (AKRP), mRNA. (1785 bp)
ataaacgctcaggacagggtaggatgatgtcaagcattcattgtaagacaacatcattgttgatcaggtggttgacaatttggcactgggttttcaggacgggtggactccactgcacgttgcagtacaggccagaagaagcgacattgtaaagcttcttttgataaaaggggcggacatagaagtgaagaacaaggatgggttaactccgcttgggctttgcctctaccttggaagagagataaggacgtatgaggtgatgaagctgttgaaagagtttccacttagcagacacaagaagagattggtaacaacagatgaagatattgaatagtcctttcaatttcagcttgaagtacactcacttatgagaacctgagaaaaggagatggaggtaaaggtgatgattagggcattggaacctcggagtcggagtgggtccactgtctcacttccttaaatttggtttgctgttagtcttatccatcgattttggatatttatcacaacttgatccattcttaaagaaaatatctgaaaataaataaaaagtaatacatatatatatatatatatattatttataacagtctgtgaatg...
position 1477
Synonym: ankyrin repeat protein; EMB16; EMB2036; EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036
NM_203271.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana NAC 007 (NAC007), mRNA. (1794 bp)
caaaattgggcatgaagagcagagtgattggtacttctttagccataaagacaagaagtatcccacagggactcgaaccaatagagcaacaaaagcagggttttggaaagccaccggaagagataaggctatctatttgaggcatagtctaattggcatgaggaaaacacttgtgttttacaagggaagagccccaaatggacaaaagtctgattggatcatgcacgaataccgcttagaaaccgatgaaaacggaactcctcaggaagaaggatgggttgtgtgtagggttttcaagaagagattggctgcagttagacgaatgggagattacgactcatccccttcacattggtacgatgatcaactttcttttatggcctccgagctcgagacaaacggtcaacgacggattctccccaatcatcatcagcagcagcagcacgagcaccaacaacatatgccatatggcctcaatgcatctgcttacgctctcaacaaccctaacttgcaatgcaagcaagagctagaactacactacaaccacctgcaatcaaatatcgcgcatgaggaacaattgaatcaaggaaatcagaactt...
position 995
Synonym: ANAC007; EMB2749; EMBRYO DEFECTIVE 2749; NAC 007; T28K15.1; T28K15_1; VASCULAR RELATED NAC-DOMAIN PROTEIN 4; VND4
NM_001332026.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G63450), partial mRNA. (1805 bp)
gagtaaatttggttatagtgtgatatggatatggaagagatttgtatcgcaatgtaaaaaagtcatttggcatgtcattgcaggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaatactttgagggaacatcatatctattacctcaagagtctagtagttaattgttacaagatagcgaaattttcacttgtgaagatcattaatagctataattgaaagccatcatttgcttgctttgtccataggagtaagtaac
position 1564
NM_001340216.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana 3-ketoacyl-CoA synthase 12 (KCS12), mRNA. (1867 bp)
aaccgagcttataaggttcatgttaaagcttcttatcaagaaaatcaagattcgtcaaaaccctagcaagggctccacgaatctcccaccggggactccattaaaggcaggaatcaacttcaagaccgggatcgaacatttttgcatacataccggaggaaaagctgtgattgatgggattggacatagcttggatttaaacgagtatgatattgaacctgcgaggatgactcttcaccggtttggcaatacttcggcgagtagtttgtggtatgtgttggcttacatggaggccaagaagagattgaagagaggagatagagtttttatgataagctttggagctggttttaagtgtaatagctgcgtttgggaagttgtgagagatcttactggtggtgaatcaaaaggaaatgtgtggaatcattgcattgatgattatccaccaaaatcgattctgaatccttatttggagaagtttggctggattcaagatgaagatcctgacactttcaaggtccctgacgctttcatgtaaaacgtttacgcacaaaaacgcaaacgcaaacgcaaaaacaacacaaggatcgaattagttaa...
position 1284
Synonym: 3-ketoacyl-CoA synthase 12; T8O18.8; T8O18_8
NM_001336183.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana cytochrome P450, family 82, subfamily G, polypeptide 1 (CYP82G1), mRNA. (1884 bp)
gcaaaaaattctcaaatgaagagactatttaaggagcttgactcagtcaacaccaagtggctccacgaacatctcaagaagagatcaagaaatgagaaggatcaagaaagaacaatcatggatctactgctagacatcttaccagaggatattgtgataagtggacacgtacgcgatgtcattgtgaaggcaacaattttggctctcacattaacaggatcagacagcacatccatcactttgacatgggcggtatcgctgctactcaacaatccagctgctttagaagcagcacaagaagagattgataatagtgtcggcaaaggtagatggattgaagaatccgatatacaaaacctcaagtacctacaagctattgttaaggaaacgcaccgactttacccgccggctcctctaacaggaatccgcgaagcacgtgaagattgtttcgtgggaggataccgtgttgagaaaggcacacgcttgctcgtaaacatatggaaacttcatagggatcccaagatctggcctgaccccaaaacctttaagcctgagaggttcatggaggataaatcacaatgtgaaaagagcaactttgaa...
position 1049
Synonym: cytochrome P450; family 82; polypeptide 1; subfamily G
NM_113423.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana CBS domain protein with a domain protein (DUF21) (AT4G14240), mRNA. (1895 bp)
agcagtcacatggctgcagttgtgaaggttaaggggaaaagcaaagtcccaccttcaactttgcttgaagaacacactgatgaaagcaatgactccgacttgactgcacctttgttactaaaacgagagggaaaccatgacaatgtcattgtcacaatcgacaaggctaatggacaatctttctttcaaaacaacgagagtggacctcacgggttttcacatacttcagaggctatcgaggatggtgaggtaattggtatcatcactttagaagatgtctttgaagaacttttgcaagaagagattgtggatgaaactgatgaatatgttgacgtacataaaaggattcgagtagcagcagcagcggctgcttcatcaatagcgagagctccttcaagccggaagttgcttgcgcaaaagggaactggaggacaaaataagcaagggcagacgaataaagttcctggtcaggaacaagataaaatgcttggaactattaccgagccgattcgaagaaacaactgatgttgtgttcttgcttaaggaggcaaaaactctgttgcggtataaagaaagaaaacaaagaataaattataagat...
position 1300
Synonym: DL3160C; FCAALL.149
NM_001036556.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ubiquitin-specific protease 27 (UBP27), mRNA. (1905 bp)
aactgcttcctcaacgtcatcctccaggctctagcgagctgcaaagattttaggagttttcttcaatgggttctagaggatgcgagaggttcgttagcaggagaacaagaggaacagcttcctcttacttttgctttgtctgctttattacaagagctcggcacagttggaagtagacgatctgtatctaaccctcgtaaagttatggtgacattgactgactatgccaaaaatttcaatttgacaagccaacaggatgcagcagaagcccttcttcatcttatatcttctttgcaagaagagattgtagtttgttatcgccctagccaaagtagtaatctttcggatatacttttctctcgcaacttgagaatgcttgcgcctagtgaaggcctccatggtttgatggagctcaagagatggcataaacatttgcgtggaccatttgatgggattcttggtagtactttaatgtgccgaacttgttcatctcagatttctttggagtttcagttttttcatactctgcctctttctcctttactccatcacggtggttacaacattatgtctggatgcactttggagcattgcttgaag...
position 795
Synonym: F23K16.5; F23K16_5; ubiquitin-specific protease 27
NM_001204036.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana NAC 007 (NAC007), mRNA. (1953 bp)
caaaattgggcatgaagagcagagtgattggtacttctttagccataaagacaagaagtatcccacagggactcgaaccaatagagcaacaaaagcagggttttggaaagccaccggaagagataaggctatctatttgaggcatagtctaattggcatgaggaaaacacttgtgttttacaagggaagagccccaaatggacaaaagtctgattggatcatgcacgaataccgcttagaaaccgatgaaaacggaactcctcaggaagaaggatgggttgtgtgtagggttttcaagaagagattggctgcagttagacgaatgggagattacgactcatccccttcacattggtacgatgatcaactttcttttatggcctccgagctcgagacaaacggtcaacgacggattctccccaatcatcatcagcagcagcagcacgagcaccaacaacatatgccatatggcctcaatgcatctgcttacgctctcaacaaccctaacttgcaatgcaagcaagagctagaactacactacaaccacctggtacaacgaaatcatcttcttgatgaatctcatttatcgttcctccaact...
position 995
Synonym: ANAC007; EMB2749; EMBRYO DEFECTIVE 2749; NAC 007; T28K15.1; T28K15_1; VASCULAR RELATED NAC-DOMAIN PROTEIN 4; VND4
NM_101098.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ubiquitin-specific protease 27 (UBP27), mRNA. (1970 bp)
aactgcttcctcaacgtcatcctccaggctctagcgagctgcaaagattttaggagttttcttcaatgggttctagaggatgcgagaggttcgttagcaggagaacaagaggaacagcttcctcttacttttgctttgtctgctttattacaagagctcggcacagttggaagtagacgatctgtatctaaccctcgtaaagttatggtgacattgactgactatgccaaaaatttcaatttgacaagccaacaggatgcagcagaagcccttcttcatcttatatcttctttgcaagaagagattgtagtttgttatcgccctagccaaagtagtaatctttcggatatacttttctctcgcaacttgagaatgcttgcgcctagtgaaggcctccatggtttgatggagctcaagagatggcataaacatttgcgtggaccatttgatgggattcttggtagtactttaatgtgccgaacttgttcatctcagatttctttggagtttcagttttttcatactctgcctctttctcctttactccatcacggtggttacaacattgtatgttacggaagatgtctggatgcactttgg...
position 692
Synonym: F23K16.5; F23K16_5; ubiquitin-specific protease 27
NM_001342538.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana cytochrome P450, family 82, subfamily G, polypeptide 1 (CYP82G1), mRNA. (1991 bp)
gcaaaaaattctcaaatgaagagactatttaaggagcttgactcagtcaacaccaagtggctccacgaacatctcaagaagagatcaagaaatgagaaggatcaagaaagaacaatcatggatctactgctagacatcttaccagaggatattgtgataagtggacacgtacgcgatgtcattgtgaaggcaacaattttggctctcacattaacaggatcagacagcacatccatcactttgacatgggcggtatcgctgctactcaacaatccagctgctttagaagcagcacaagaagagattgataatagtgtcggcaaaggtagatggattgaagaatccgatatacaaaacctcaagtacctacaagctattgttaaggaaacgcaccgactttacccgccggctcctctaacaggtcacaaatcaaagaatctttattgtcattataattcttatttcatgaccttattaatcttgtaaatgttcaacctgaattgtttatacaaaatgatgaatgattaggaatccgcgaagcacgtgaagattgtttcgtgggaggataccgtgttgagaaaggcacacgcttgctcgtaa...
position 1049
Synonym: cytochrome P450; family 82; polypeptide 1; subfamily G
NM_202630.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G63450), mRNA. (2000 bp)
aatgatggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaat
position 1901
NM_116210.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G63450), mRNA. (2011 bp)
atggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggtaggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaat
position 1912
NM_001340218.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ubiquitin-specific protease 27 (UBP27), mRNA. (2017 bp)
aactgcttcctcaacgtcatcctccaggctctagcgagctgcaaagattttaggagttttcttcaatgggttctagaggatgcgagaggttcgttagcaggagaacaagaggaacagcttcctcttacttttgctttgtctgctttattacaagagctcggcacagttggaagtagacgatctgtatctaaccctcgtaaagttatggtgacattgactgactatgccaaaaatttcaatttgacaagccaacaggatgcagcagaagcccttcttcatcttatatcttctttgcaagaagagattgtagtttgttatcgccctagccaaagtagtaatctttcggatatacttttctctcgcaacttgagaatgcttgcgcctagtgaaggcctccatggtttgatggagctcaagagatggcataaacatttgcgtggaccatttgatgggattcttggtagtactttaatgtgccgaacttgttcatctcagatttctttggagtttcagttttttcatactctgcctctttctcctttactccatcacggtggttacaacattatgtctggatgcactttggagcattgcttgaag...
position 726
Synonym: F23K16.5; F23K16_5; ubiquitin-specific protease 27
NM_120097.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana CBS domain protein with a domain protein (DUF21) (AT4G14240), mRNA. (2060 bp)
agcagtcacatggctgcagttgtgaaggttaaggggaaaagcaaagtcccaccttcaactttgcttgaagaacacactgatgaaagcaatgactccgacttgactgcacctttgttactaaaacgagagggaaaccatgacaatgtcattgtcacaatcgacaaggctaatggacaatctttctttcaaaacaacgagagtggacctcacgggttttcacatacttcagaggctatcgaggatggtgaggtaattggtatcatcactttagaagatgtctttgaagaacttttgcaagaagagattgtggatgaaactgatgaatatgttgacgtacataaaaggattcgagtagcagcagcagcggctgcttcatcaatagcgagagctccttcaagccggaagttgcttgcgcaaaagggaactggaggacaaaataagcaagggcagacgaataaagttcctggtcaggaacaagataaaatgcttggaactattaccgagccgattcgaagaaacaactgatgttgtgttcttgcttaaggaggcaaaaactctgttgcggtataaagaaagaaaacaaagaataaattataagat...
position 1465
Synonym: DL3160C; FCAALL.149
NM_117501.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G63450), mRNA. (2085 bp)
aatgatggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaat
position 1986
NM_001340217.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G63450), mRNA. (2142 bp)
agcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggtagtcatttggcatgtcattgcaggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaatactttgagggaacatcatatctattacctcaagagtctagtagttaattgttacaagatagcgaaattttcacttgtgaagatcattaatagctataattgaaagccatcatttgcttgctttgtccataggagtaagtaacaaagaaaagttaacggcttggaatctttagtagttagtgtctgtcgttttg
position 1850
NM_001340215.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana 3-ketoacyl-CoA synthase 12 (KCS12), mRNA. (2162 bp)
aaccgagcttataaggttcatgttaaagcttcttatcaagaaaatcaagattcgtcaaaaccctagcaagggctccacgaatctcccaccggggactccattaaaggcaggaatcaacttcaagaccgggatcgaacatttttgcatacataccggaggaaaagctgtgattgatgggattggacatagcttggatttaaacgagtatgatattgaacctgcgaggatgactcttcaccggtttggcaatacttcggcgagtagtttgtggtatgtgttggcttacatggaggccaagaagagattgaagagaggagatagagtttttatgataagctttggagctggttttaagtgtaatagctgcgtttgggaagttgtgagagatcttactggtggtgaatcaaaaggaaatgtgtggaatcattgcattgatgattatccaccaaaatcgattctgaatccttatttggagaagtttggctggattcaagatgaagatcctgacactttcaaggtccctgacgctttcatgtaaaacgtttacgcacaaaaacgcaaacgcaaacgcaaaaacaacacaaggtgatacaatattct...
position 1456
Synonym: 3-ketoacyl-CoA synthase 12; T8O18.8; T8O18_8
NM_128424.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Heat shock protein 70 (Hsp 70) family protein (BIP2), mRNA. (2575 bp)
atcccaagaaacacggttattccaaccaagaaatctcaggttttcacaacgtaccaagaccagcagaccaccgtctccattcaggtctttgaaggtgaaagaagtctcaccaaggactgcaggctactcgggaaattcgacctcactggagtcccaccggccccaagaggaacccctcaaatcgaggtcacatttgaagtggacgccaacggtattcttaatgtgaaagcagaggacaaggcgagtggtaaatcagagaagattacaatcacaaacgagaagggtcgtctgagccaagaagagattgaccggatggtgaaggaggcagaggagtttgcagaggaagacaagaaggtgaaggagaagatcgacgccaggaatgccctggagacatacgtgtacaacatgaagaaccaagtgagcgacaaggacaagcttgcagacaaattggaaggagatgagaaggagaagatagaagcagcgacgaaagaggccttggagtggctcgacgagaaccaaaactcagagaaagaagagtacgacgagaagctcaaggaggtagaggcagtgtgtaacccaatcatcacagcagtttaccag...
position 1840
Synonym: BIP; luminal binding protein; MJC20.12; MJC20_12
NM_180788.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Heat shock protein 70 (Hsp 70) family protein (BIP2), mRNA. (2617 bp)
atcccaagaaacacggttattccaaccaagaaatctcaggttttcacaacgtaccaagaccagcagaccaccgtctccattcaggtctttgaaggtgaaagaagtctcaccaaggactgcaggctactcgggaaattcgacctcactggagtcccaccggccccaagaggaacccctcaaatcgaggtcacatttgaagtggacgccaacggtattcttaatgtgaaagcagaggacaaggcgagtggtaaatcagagaagattacaatcacaaacgagaagggtcgtctgagccaagaagagattgaccggatggtgaaggaggcagaggagtttgcagaggaagacaagaaggtgaaggagaagatcgacgccaggaatgccctggagacatacgtgtacaacatgaagaaccaagtgagcgacaaggacaagcttgcagacaaattggaaggagatgagaaggagaagatagaagcagcgacgaaagaggccttggagtggctcgacgagaaccaaaactcagagaaagaagagtacgacgagaagctcaaggaggtagaggcagtgtgtaacccaatcatcacagcagtttaccag...
position 1944
Synonym: BIP; luminal binding protein; MJC20.12; MJC20_12
NM_001344430.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ubiquitin-specific protease 25 (UBP25), mRNA. (2758 bp)
gcggagtaatggctccagcaatgggggtgatcaccacaaggataacttacatccatgtggaagtaatggctcacaaaatggaactgctcaccccgaaactgagaggaacggtgttagtaccacccaatccaaaggcttgtgttcttcaacaaaggaagacccctgcattttgctgagaaaagacgaatcatctcggaatgaacttgaagcaataaaagagagcctgaaaaaagacgcgctgtcacatctacgttcatgcggatggtatgacaaggttctcatctccatgcatgccaagaagagattgcgtacagagcaatcaggtggagaagatggtagcgacttgaaaaggaggttgattgaagatgtgaaatcaagtttgaaatcacagattccagaggagttgaaagcagatctggtaaatcgtatctgggagattagcaagaagaagtactcgtgaaccattgttttttgcttcaacaaaaatgactcgaatctctggaagcatgaagcctctacttggtcccttcacacacacactcctcattcctcatttcatcattgcttaacccatccggctagtctgattatacagagtga...
position 2126
Synonym: ubiquitin-specific protease 25; UBIQUITIN-SPECIFIC PROTEASE 25
NM_112299.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana heat shock protein 70 (Hsp 70) family protein (BIP1), mRNA. (2836 bp)
atcccgagaaacacggttattccaaccaagaaatctcaggttttcacaacgtaccaagaccagcagactaccgtctccattcaggtctttgaaggtgaacgaagtctcaccaaggactgcaggctactcgggaaattcgacctcaatggaatcccaccggccccaagaggaacccctcaaatcgaggtcacattcgaagtggacgccaacggtattcttaatgtgaaagcagaggacaaggcgagtggtaaatcagagaagattactatcacaaacgagaagggtcgtctgagccaagaagagattgaccggatggtgaaggaggcagaggagtttgcagaggaagacaagaaggtaaaggagaagatcgacgccaggaatgccctggagacatacgtgtacaacatgaagaaccaagtgaacgacaaggacaagcttgccgacaaattggaaggagatgaaaaggagaagatcgaagcagcgacgaaagaggctttggagtggctcgacgaaaaccaaaactcagagaaagaagagtacgacgagaagctcaaggaggtagaggcagtgtgtaacccaatcatcacagcagtttaccag...
position 1911
Synonym: T26D3.10; T26D3_10
NM_122737.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana exocyst subunit exo70 family protein G1 (EXO70G1), mRNA. (3080 bp)
tttaagaataatcaaagccattgagcagaatctggatgtatggatgaaagcgtatccggatcaaacgcttgcgcatttcttcggtatgaataatcactggcatttatacaagaacttaaagggtacaaatattggggatcatttaggagattcgtggctgaaagaacatgatcagtacaaagagtattacgccactgtcttccttagagacagttggggtaagcttccaagccacttgagccgagaagggctgatacttttctcgggtggacatgccacagctcgtgatcttgtcaagaagagattgaaagcattcaatgatgcgtttgatgagatgtataagaagcaagcatcatgggtcttaccagagaaagatttaagggatagagtttgccagcagatagttcaggctattgtgccggtttacagaagctatatgcaaaactatgggccattggttgagaaagacgcgagttcaagcaagtatgtgagatacactgtggtagctttggagaagatactcagttctctttacatgcctaagcccatgagatatggaagcttcaaaggaacaccgccaagtgagaaattcaagaatga...
position 2384
Synonym: ATEXO70G1; exocyst subunit exo70 family protein G1; F3L17.110; F3L17_110
NM_119303.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana root hair specific 8 (RHS8), mRNA. (3330 bp)
Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA ttcgttgcttccctttttcctatttggaaaaggaaaatatttgccttattataagacaagagcagagaggacacaaataaagataagaagattaggattatactttgaaacgtgataatgagaactagacatggcagcaaaaggacaaagatagagaaggagtctcgagtaagtcaagtaacgtcggagacaagaagagattgcctgtgaagtccgtagctaagtttctcgttgtatccaagttattggcaacaattatccgcagtcgatatttcattagatcgtttccctttaggtcttcgcttcagccacatatactctttgcattcaaatatttagataaccaaaacggacgccagatttgtaacttcttcacgtattcctcgacatcaaccaagaatctaccgtattatttatctcttagtgcgacatgctcaatcccgagtccgtattgccgcaggatcaataatgttccttattacgttaatggtttgataagtct...
position 191
Synonym: F2K11.17; F2K11_17; root hair specific 8; XUT1; XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1
NM_105024.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana early endosome antigen (AT2G32240), mRNA. (4480 bp)
gctgctgaaaagtccgttctggaatcacattttgaagaacttgaaaaaactttgtcagaggtcaaagctcagttgaaagaaaatgtggaaaatgcagctactgcgtctgtaaaagtggcggaattgacctcaaaactgcaggaacacgaacatattgctggtgaacgagatgtgctcaacgagcaagtgcttcagcttcagaaagagcttcaagcggctcagagttccattgatgaacagaaacaagcacactcccagaagcaatcagagctggagtctgcattaaagaaatcacaagaagagattgaagctaagaaaaaggctgtcactgaatttgaatcaatggtcaaagatcttgaacagaaagtgcagctcgcagatgctaaaactaaggaaacggaggcaatggatgtaggtgtcaaatctcgagacattgacttatccttttcttctccaacgaaacgtaagagcaagaagaagccagaagcatctctttcttcttcttcgtcttcgggcaatgttactactcctactcaaacagcatcaacttcacatctcatgacagtgaagatcgtcactggagtggcgctgatctctgtt...
position 3827
Synonym: F22D22.1; F22D22_1
NM_128783.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/en/at/seq%3acaagaagagattg
lang : en | div : | spe : at | query_string : seq:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.075 | 0.075 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Arabidopsis thaliana (thale cress)?to=0&format=json
0.136 | 0.061 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Arabidopsis thaliana (thale cress)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.140 | 0.004 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]