GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-10-09 13:17:33, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XR_012673829            3902 bp    RNA     linear   VRT 11-JUL-2025
DEFINITION  PREDICTED: Calonectris borealis NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X3,
            misc_RNA.
ACCESSION   XR_012673829
VERSION     XR_012673829.1
DBLINK      BioProject: PRJNA1289127
KEYWORDS    RefSeq.
SOURCE      Calonectris borealis (Cory's shearwater)
  ORGANISM  Calonectris borealis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes;
            Procellariiformes; Procellariidae; Calonectris.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_134316) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_964195595.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/10/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3902
                     /organism="Calonectris borealis"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:1323832"
                     /chromosome="5"
     gene            1..3902
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:142082797"
     misc_RNA        1..3902
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X3"
                     /db_xref="GeneID:142082797"
ORIGIN      
cgctccgcccccgccatggagttgctgcgtaggcggtgctgccgctgggggccgagatcccggcagcggcggtctatgtcccacgcctctggaggtccgggagtgcggcagaggggctcgtctgtccggccagccccaccgctgagtgcgctctgtaagcgctgtttcagagggcggtgtgcccctcagcccgggctcctcccgcaggtgcggagcaccagcgtagaaccaagctacaggcacagtcaggggactaatgtttatgactccatttctcaagaattggactggcttagtaacccaagcttctctacggaagatgcactattactgcatcagcgcactacagaagttgcaaatctcatccctgaaaaatcaccactaataagcaggactacttcaagatcagagttgtcaggggaaagtgatacagatgagagtctgaaacagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagaagacaaaaaagaaaaccaaaggggactctagtagcagcgaatcagacctggacactaagcacatcaaggacaaagccacaagaagtggcagaaatcatgaaaaggaagcagcagtgaatctagataagaaaacatcaaatcttaccagcagtcgctctgtttggcttgatgatatccaagctttcacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggggacatagcaagatataaaaggagaggagagtcatgtcttggcatagatgcaaagaaacagtgtataacttgggacagttctgcatcaaaaaggaagcaattacagaggcgacctgagcgctacttcacaaagaacaatatgaagatgctgaacatagatgggattcctgtttgcaataaaagttctccgtctgacccaactgcttttataccagttttccaaatggaaactgatgatctttctgacacagcggaggtaaatcctcttgggatttatgatccatcaactacagtgtggctacaaggaaaagggtgcaagagtgcagaccatgagcctgtaaatacgcagcaaacaattcaagagcctgggataaaaattaactccattctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaagtaagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcacagagttctgggaaccaccagccttgatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagtttactaccttttctgtttcaaaaatcaatagtctctatggaaaatgtttgactacactggcagctgtacaggatggcagtatggtgtcacatcctctactgcctggcacagaagaagctatgttagctatatttattcagcagtgccactttctgaggcaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccgacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgtattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgctcttaagcctgatgatgatgatgatgaagagatagatgaggatcaagaaataaaggataaaactctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtattatttgatgatctcggaccatctttaatccagctttctaatccagatcttcaatgtcaactactgtactcgtttttgcaattcctgggagttccatgtacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatctttgacagtgtgctttctgatgaaaagccactgacttctgttgattttccactttctggattcaacagtattggtcatatggacacaatgctacgagggagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatctaacctgtccgtttgttggttacagtatgaagtatctaaggtagttcagtgtctccaagcaaaaaacaagaagaagctgaaagcacaagggaggaagagtaaaaagttggccaagaatctccttaaagcacctgacaaccgaaaccatctttctctctggaaactatatgcctacctagaatggctgcttggtaacattgatgatgccaggaaggtatttgacacagctctttgcatggcagggacaggaggattgaagagtccccagctctgcagcctcactctgctttatgctcagctggaagtggaactactagaaagtacagacggagctgttacgtcacgtgctgttcatatattgaccaaattggctgaaagtggaccgtatgtgccgtatagtggacaagtgttatctgtgaatgtcttaaaagctcgcaaaacatatgagcatgcactgcaagattatttaagtaaaacaccagtttctgatcaggatcaggtcagtgatgctaatcagctggttaacttggttggttgttacgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcggaaaaacttgaagctcctggtccacagacaggtgaaaatactggagagaattttggcattcaaaattttcccactgctcttgaagctgtcacagtgctgcatacaaatttactcagattccacatgaaaattagtgtttatcctttgagtcctctgcgagaggcactaactgaggctctgaaacggtatcctagcaaccagtctctttggaggtcatatatccacatccaaaggaagtctcacagtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactaactctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcactgagaatgtccagagggcaggtgttggtgaaatacattctactattcctgaaactgggttaacaaatcggattgtagctctatttgaacacgcagttcagagtgaaaatggtacccattgtccactgctgtggaggatgtatttgaactttctgaatcacacaatggctgaggttggaagggacctctggagatcatcttgtccaactccactgttcaagcagggccacctagagccagttgtccatgacaatgtctagatagcttttgaatatctccaaggatggagactccataactctctgggcaacccatgctagtgctcagtaaccctgacagaagaagagtgtttcctgatgttcagatggaacctcatgtgcttcagttgctgtctgttgcctctggtcctgtcactgggcaccactgaaaggagcctggctccctcttctttacatcctcgcttcaggcttcactaggaaaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaag
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]