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2025-10-09 13:17:33, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XR_012655828            3598 bp    RNA     linear   VRT 08-JUL-2025
DEFINITION  PREDICTED: Chelonoidis abingdonii NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X3,
            misc_RNA.
ACCESSION   XR_012655828
VERSION     XR_012655828.1
DBLINK      BioProject: PRJNA680106
KEYWORDS    RefSeq.
SOURCE      Chelonoidis abingdonii (Geochelone nigra abigdonii)
  ORGANISM  Chelonoidis abingdonii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
            Testudinoidea; Testudinidae; Chelonoidis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133772) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_003597395.2-RS_2025_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/10/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Chelonoidis abingdonii"
                     /mol_type="transcribed RNA"
                     /isolate="Lonesome George"
                     /db_xref="taxon:106734"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Ecuador: Galapagos Islands"
     gene            1..3598
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116827131"
     misc_RNA        1..3598
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X3"
                     /db_xref="GeneID:116827131"
ORIGIN      
ctacatttcccagcatgctggggcagcgagcggcgccatcttgcctcgttgggcagctgggtctccttgggaagcaagaggggaggaagctgtagttcagcccatggctcttttcccagcctttgccggcgccgctgagcccggggagacgccagccagcggtagcgagggctccaggagagaattggactggcttagcaatccaagcttctgcacagaagatgcattgaaactgcaccagcatgctgcagatcttactcctgagagctcacaacttataagcaggagtccttcaagatcaaaactctcaggcggaagtaataccaatgaagatctaaaaaaatcaactaagaaaaggaaagggaaaaagaaaaagcatcaccaccacaagaaaagaaaaaagaaaactagagaggaatcaagtaacagcgagtcagactcagacaatgagtgcatgaaggataaacctagaggaagtgacacaaaccatgaaagagaagcagcgacattgaatctagaagacataacttcacatggtgtcaccagtcgctttgtttggcttgaggatattcaggctttgacagcagagaccttcagaacagacaagaatccagaccctgcaaactgggaatacaagtcactgtatcgaggggacatagcaagatacaagcggaaaggtgactcatgccttggtattgacctaacgaaacaatgtataacttgggaaagttccatggtagaaaagaaacagtcccacaagcaacctgagcgctacttcacgaagaatagtgtgcagttattgagcacagatggaattccagtttacagtaaaagccaaacttcatctggtccaagcacttttataccggtttcacaactggacagtgatgctcctcctccaacaacctgtgtgaatcctcttgggatttatgatccattgaccacactctggttgcaaggaaaaggtcccccagagcatgagactttaaagcagcaggcatcccaagagaccagtgagaatgttaactctattctaaaggcaaaagtggaagaatataataggatggtcagagaaaatccaagagatgttcacacttggatggaatttgtttcttttcaggatgaagtaatgagaggacccagcccttacgccatcaaagagggagagcaggaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaacccaaatgatgttgatctgaaacttgccaagctgaagctttgtacagaattctgggaaccatcaagtttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagtcctgtggcagaaatatctcttattttgtcaaagtcagttcagcaccttttcagtttcaaaagtccacagtttatatggaaaatgtttgagcactttgggagctgtacaggatggcagcatggtatcacatcctgtactgcctggcacagaagaagctatgttagctgtctttcttcagcagtgccattttcttagacaggcgggtcattctgagaaagctgtgtctttgttccaagccctggctgatttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtggagttctttgaaccattttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaaacgtggatgcatcaacaagaaaagggaggctggattatcatcaataaacttgatgaggatgaggaagatgtagatgaagatcaagaaataaaggataaaactctacctaaatggcaaatttggctggacattgaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcagactgaagaagattgtgaagacccagagagacaggtattgtttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctgtactcatttctgcaattcgtgggagtcccatgtgggcgtagtctctttccttcaaatctctatatcgctatggatgagaacaatgtctttgacaatgagcagtctgataggccactgacttcttttgactctctgctttctggagtcaatagtattggccatatggacacaatgaccagagggagacagcacatagggcactgtaaggaaggagaggagttcatacagaatgtctttcatttaatattgccgttgttttcaggaaaggaaaaggcaaacctttctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagcaaaaaacaagaagaaactgaagtcacagggaaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcctacttggaatggttacttggcaacactgaagatgctagaaaagtgtttgatacagctctttgcttggcaggcactgaaggaatgaaaaatacacaactctgtaatctgagcctgctttatgcttcattggaagtggagctactagagaatttggaggaaactgttatgtcacgtgctttacatatattgaccaaactggctgaaagtgggccatatgtaccttatactgggcaagtgctatctgtgaatatcttgaaagctcggaaggcatatgagcatgcattgcaagattatttaagtgaaagtccaatctctaattgggatcaagctagcaattctagccaactggttaatttagttggttgttatgcacttttccagtatttgactgttgggattgatgctgctgtattaatatgtagacatatttctgaaaagcttaaaggttctgcttcacagaagtttgaaagcattggagaaaatcttggcattcataatttctccactcctcttgaagctgtcacactcatgcacacaaatttacttaggtaccatatgaaagttagcatttaccctttaaatccactgcgagaggcactaacggaagcattgaagctgtatcctagcaaccagtctctttggaggtcatatatccagatccaaagcaagtctcacaatgctagcaaagcacgaagattttttgatagtgtcacaaggtctactaagtccctagagccgtggctgtttgcaatccaagcagaggagatgagaaagaagcttgtcgagaatgttcagagagtagatgttggagaaatatattcaacaattcctgaaactgggttaacaaatcggatcaaaggtttatttgaacatgcaattcagagtgaaaatggtgcccattgtccattgctgtggagaatgtatttgaactttctggttgctaaagtttgagaaccactgctctaaatgttccattccccaacttttgggataaagcttttcagaaaaggaagataaaggggggcttttttattctgaacttaacccgcagttttctctaggaaataaagaaaggagcaaaggactgttttataaagcccttcagaactgtccctgggcaaaggt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]