GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-22 02:00:58, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_009987758            2595 bp    RNA     linear   INV 05-FEB-2024
DEFINITION  PREDICTED: Saccostrea cucullata uncharacterized LOC134247047
            (LOC134247047), ncRNA.
ACCESSION   XR_009987758
VERSION     XR_009987758.1
DBLINK      BioProject: PRJNA1071555
KEYWORDS    RefSeq.
SOURCE      Saccostrea cucullata (small rock oyster)
  ORGANISM  Saccostrea cucullata
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
            Saccostrea.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026937003) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_032062105.1-RS_2024_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/31/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Saccostrea cucullata"
                     /mol_type="transcribed RNA"
                     /isolate="Sc308-1"
                     /db_xref="taxon:36930"
                     /chromosome="Unknown"
                     /tissue_type="Abductor muscle"
                     /geo_loc_name="Australia: WA, Karratha"
                     /collection_date="2022-03-29"
     gene            1..2595
                     /gene="LOC134247047"
                     /note="uncharacterized LOC134247047; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon."
                     /db_xref="GeneID:134247047"
     ncRNA           1..2595
                     /ncRNA_class="lncRNA"
                     /gene="LOC134247047"
                     /product="uncharacterized LOC134247047"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:134247047"
ORIGIN      
ctcaaaatattgtcatttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtcgtgcggtgtgcggtgtgcgttaactttttagaatatgggccataactcaagaaccccttggccaatcagtgtcaaatttgtcacagggcatccttggcccaagggctaccatttatactaaaataagggttgggaccctaaaacaaggggagataatcaggaaaacaaaaccaaaagtactggttgcaaaaaaatcttcttctccagaaccactgggcagattttcaccaaacttacacacaaggatcaggatatgttgaagattaaaaattgttcaaggcatgaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaatttacaattaatgaaaatgtctatattttgcttactataaggactaggatcatcaaatcttgtaagttgatgcatcttaggacttcacatcatgttaactcaaaagtaggtcacagtgacctacttttttaattttgcaggcatttgttttcaaattgatttgaatgcatattttggacactttaaggcctatgatcattaaactttgtcagttgatgcatcttgggtccttgaacaaggtcaacttaaaagtaggtcaccgtgacctactttttgaactttatgacttatcctttttaaaacatttcatcccattatttcagacactgagagggttagaatcatcaaatcttgtaagttgctgcatcttgggacctaaaaacatatttaagtaaaagtaggtcactgtgacctacttttagaattttgcaggcatatgttttcaaattgtttaaaaggcatattttgattaccttcagaccagcgatcatcaaacttggtcagctgatgcatcttgggactctgaaaaatgtcgaccaaaatgtaggtcaccgtgacctactttcgacattttatggctatatttcagtatcttaggtatttattggcttagaatcattaaactttgtgagttgatgcatcttgggttttcggagagtgacgaccaaaaattaggtcactgtgacctactttcaagatgttatggctatatttatgtatctccagtacttatcggcttagaatcatcaaactttgtgagttgatgcatcttgggttttcggagagtgacgaccaaaaattaggtcacggtgacctactttcagtatgttatggctatatttatgtatctccagtacttatcggcttagaatcatcaaactttgttagttgatgcatcttgggttttcagagaatgtcgaccaaaaagtaggtcacggtgacctacttttgacatttaatggctatatttatgtatttctggtacttattggcttagaatcatcaaactttgttagtttatgcctcttgggttttcagagaatgtcgaccaaaaagtaggtcacagtgacctacttttgaatatctcaggtatttattggtttagaattatcaaacttggtcagcagatgcatcttaggcctctgataaatgtcaaccaaaatgtaggtcatggtgacctacttttgaatatatcaggtatttattggtttagaatcatcaaactttgtcagttgatgcatcttgggttttcggaaaatgtcgaccataaagtaggtcacgatgacctacttttgacattttatggctatattcaagtatctccggtacttattggcttagaatcatcaaactttgttagtttatgcctcttgggttttcagagaatgtcgaccaaaaagtaggtcatggtgacctacttttgaatatctcaggtatttattggtttagaattatcaaactttgtcagcagatgcatcttgggactctgaaaaatgtcaactaaaatgtaggtcatgataacctactttcgacattttatggttatatttaattttctctggtacttattggcttagaatcatcaaactttgttagtttatgcctcttgggttttcagagaatgtcgaccaaaaagtaggtcacagtgacctacttttgaatatctcaggtatttattggtttagaattatcaaactttgtcagcagatgcatcttgggattctgaaaatgtcaactaaaatgtaggtcatgataacctactttcgacattttatggttatatttaattttctctggtacttattggcttagaatcatcaaactttgtcagttgatgcatcttgggttttcagagaatgtagaccaaaaagtaggtcaaggtgacctacttttgaatatctcaaatacatattggcttagaatcttcaatcttagtttgtctattaatgcatcttgagtcctcagaaaacttcaatcataaagtaggtcaccgtgacctactcatgtttttttttatagctttattaaaatatcttcagtcctaattggctaagaatcatcaaactttctatcagttgatgcaacttgggttttagggtacttagggttagaggcttcaaatacaagtgataggttgtacaatttatcagaagagcgattcaaggcccttgggcctcttgt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]