2024-04-20 08:04:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_004271746 3185 bp RNA linear PRI 02-FEB-2020 DEFINITION PREDICTED: Sapajus apella NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, misc_RNA. ACCESSION XR_004271746 VERSION XR_004271746.1 DBLINK BioProject: PRJNA599380 KEYWORDS RefSeq. SOURCE Sapajus apella (tufted capuchin) ORGANISM Sapajus apella Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Sapajus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022436960.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sapajus apella Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3185 /organism="Sapajus apella" /mol_type="transcribed RNA" /isolate="SASKATOON/1434" /db_xref="taxon:9515" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..3185 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 101 ESTs, 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns" /db_xref="GeneID:116557893" misc_RNA 1..3185 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /db_xref="GeneID:116557893" ORIGIN
ccccttggccccgccctgtcctgctttgccctgcctccctgccccgccttgtccccgtgccatgacgcccctcccctctgggccccgcccctcccgcttcggggtcaggccctagaaatcgccgggaaaaccacacttcccagagtgcaccgcgatggcggggtcctcggaccggcgcttgctcgtcggcgccatttctgtagagaggaacggcggtgcggcctgtggtcatggcgctgttcccggcctttgcgggggttagtgaggcccccgatagtgggagctccaggaaagagttagactggctgagcaacccaagcttttgtgttggatccataacgtccctgaaccaacaaactgaagcagccacagcccatatttctgaagggtcaccgctgtcgaggagtcctccgaaatcagagccttcagatgaaagtgacactaacaaaaagttcaaacaaacaagcagaaaaaagaagaaagagaaaaagaaaagaaggaagcatcagcatcataagaaaacaaagaggaaacatggacagtcgagtagcagcaggtctgagacagacactgattctgaaaaggacaaaccttccagagccatcggaggcagtaaaaaggaatctgagaaaccgaatgaaggaaataatgctgcagctgaatctggacatcgctttgtttggcttgaggacattcaggctgtggcaggagaaaccttcagaacagataagaaaccagatcctgcaaactgggagtacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaatcctgcgaaacaacgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtggggttaatgaacatcgatggagttgccattagcagtaaaactgaacctccatcatccgaccccgcctcctttataccagtgaaggacttggaagatgcagctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctgcaaggacagggtcctccagagcaggaatcaaagcagccagacacacagccagacagcgagagtgcggctctcaaggccagggtggaggagtttaacaggagggtgcgggagaatccgcaggatacgcagctgtggatggcatttgttgcttttcaggacgaggtcatgaaaagtcctggcttgtatgccatcgacgaaggagagcaagaaaagcgaaagaggtccctgaagctcgttctggagaagaagctggccattctggagcgggccattgagagcaacctgagcagtgtggatctgaaactggccaagctgaagctctgcgcagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaataatacagccctttggcagaaataccttttgttttgccagagccagtttagtaccttttcgatatcaaaaattcacagtctttatggaaaatgcttgagtaccttgtctgctgttaaggacggcagcatcttatctcaccctgcgttgcctggcacagaagaggccatgtttgcactctttcttcagcagtgccacttactgcggcaggccggccactctgagaaggccatctcattgttccaggccatggtggacttcaccttcttcaaacctgacagcctgaaagatatgcccaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggagaagggagcccgaggctggaaggcgtggatgcaccagcaggagcgaggtggctgggtggtcatcaacccagatgaggatgacgatgaaccagaagaggacgaccaggaaataaaagataagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagaccagaggcactggcggccctggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatcctgagagacaggtgttgtttgatgatattgggcagtctttggtcagactttccagcccagatctgcagttccagctggtgcaggcctttctgcagttcctgggtgtgccttccggcttcactcctccagcctcctgtctttatctggccatggatgagaacagcctctttgataatggactttatgatgaaaagcccttgacttttttcaaccctttgttttccggggccagctgtgtgggccgcatggaccggctgggctgtcctcgctggaccagggggcagaaccgagagggcgaggagtttatccgcaatgtcttccacctagtcatgcctttgttttcaggcaaagagaagtctcagctctgcttctcctggttacagtatgagattggaaaggtcatgtggtgtctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcccatctggagtggttgcttggcaacacagaggatgctagaaaagtttttgacacagcactcggcacggcaggaagccaaggactgaaggactctgaactctgtgagctcagtctgctctatgccgagctggaggtggagctggaggtggagctgttgccagaagtgagaggggccgcctccgcccgagctgttcacatattaaccaagctgaccgagagcagcccctacgggccctacactggacaggtgttggctgttcacattttgaaagcacgaaaggcttacgagcacgcgctacaggactgtttgggtgacagctgtgtctccgatccagctcccaccgattcctgtacccgcctaattagcttggccaaatgcttcatgctcttccagtatttgaccatcggaattggtgctgctgtggggatatacgaacaggttagatggtagagagatccacgccacgattcctgagaccggcttaacgcatcggatccaagccctgtttgaaaatgccatgcgcagtgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttttggtttccttaggaaataa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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