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2025-01-31 02:57:40, GGRNA.v2 : RefSeq release 227 (Nov, 2024)

LOCUS       XM_067595367            3058 bp    mRNA    linear   VRT 22-AUG-2024
DEFINITION  PREDICTED: Thunnus thynnus claudin-4-like (LOC137186432),
            transcript variant X1, mRNA.
ACCESSION   XM_067595367
VERSION     XM_067595367.1
DBLINK      BioProject: PRJNA1130912
KEYWORDS    RefSeq.
SOURCE      Thunnus thynnus (Atlantic bluefin tuna)
  ORGANISM  Thunnus thynnus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089523) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963924715.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/03/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Thunnus thynnus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8237"
                     /chromosome="7"
     gene            1..3058
                     /gene="LOC137186432"
                     /note="claudin-4-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 272 Proteins"
                     /db_xref="GeneID:137186432"
     CDS             295..1449
                     /gene="LOC137186432"
                     /codon_start=1
                     /product="claudin-4-like isoform X1"
                     /protein_id="XP_067451468.1"
                     /db_xref="GeneID:137186432"
                     /translation="
MVSMGRQMLGFALAIIGFLGTIIVCALPMWKVTAFIGANIVTAQVIWEGLWMNCVTQSTGQMQCKIYDSLLALPQDLQAARALVVIAIIVSAFGIILGIAGGKCTNFVEDERAKTRVAIAAGIVFICAGVLILIPVCWSANTIIRDFYNPILTNAQRRELGTMGSMGMQMVGSALALFGWIGVLIACGSPMWRVTAFIGNNIVTSQTMWEGIWMSCVVQSTGQMQCKVYDSMLALSTDLQGARALVVVSIITGIAGLLIAFAGGKCTNFIPEERAKARALVAAGVVLIISGILCLIPVSWTASIIIRDFYNPLLVDAQKRELGASLYIGWGAAALLILGGGLLCANCPPKEDKTPSVKYLINKSSGGHSKEESGRSVTPTKTYI"
     misc_feature    304..762
                     /gene="LOC137186432"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     misc_feature    790..1284
                     /gene="LOC137186432"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      
tttacggacctaatttacatagagtcatttaagactgatgctcatctcatcgaaactactcccctgtccacatacagataatgtaaagaatctggttgggctggtaaatcaccattgtgctggtttcaggtcagaggggaaggacgttctgactccaccttcgaggaagacatgcttataaccgaaggaagtatgccacagcctttattcaacttcacaactgagccgagctgatcaactcttgaattttttctgcttctgttcagctacaagtgactcaaacaagacctcaacatggtgtcaatgggacgacagatgctgggctttgccttggccatcatcggcttcttggggaccatcattgtttgtgccctgccgatgtggaaggtcacagccttcattggagccaacattgtgacagcacaggtcatctgggaagggctgtggatgaactgtgtgacgcagagtacgggccagatgcagtgtaagatctatgattctctactggctttgccccaggaccttcaggccgccagagctcttgtggtcatcgccatcatcgtctctgcctttggaatcatcctcggcatcgccgggggtaagtgcaccaactttgttgaggacgaacgtgccaaaaccagggtggccatcgctgctggaattgtcttcatctgtgccggcgttctgatcctcatccccgtctgctggtctgccaacaccatcatcagagatttctacaatcccatcctgaccaatgctcagaggagggagctggggacgatgggctccatggggatgcagatggtaggcagcgccttggcccttttcggctggatcggggtgctcattgcgtgcggctcacccatgtggcgggtcaccgccttcattggcaacaacatagtgacctcccagaccatgtgggagggcatctggatgagctgtgtggtccagagtacaggccagatgcagtgtaaggtctacgactccatgctggctctgagcactgacctccagggggctcgggcactagtggtggtttctatcatcacaggtatcgcagggctcctcattgccttcgctggtggaaaatgcaccaacttcattccagaggagagggccaaggcgagggctttggtggcagcaggcgtggtgctgatcatcagtgggattctctgcctcattcctgtatcctggaccgccagcattattataagggacttctacaaccctctgctggtagacgcccagaaaagagagctgggagcctctctttacatcggctggggggctgcagcactgctgatcctgggaggggggcttttgtgcgccaactgcccccccaaagaggacaagaccccctctgtgaagtacctcataaacaagtcttcaggaggacacagcaaagaggagtcaggccgatctgttacaccgacaaagacttacatttgacatttctgaaggtacaaatggaagtctgttaatgattttatcttcaagaatagaaactttaatcggtcgctgtgaaacgtcaagaacaaggacccacaatgaaggaaatatgcactttgtctttataagagaatcactctttggatgtatgaagatgttttctgtctgataaatattgatgttactcttggtactgaacatgtatatgggggtagtttaaatcatagaaactgttttaaatgtttggttgattccaatttaaaacttaacttttttgcactgagcatcattttgttctttgatatttgtgattatatttttttcccagtaaacgaccttgtattgtacatttttcttcttcttctctcgtgcttcttgtttgtatacatttgaaaaatgcaccagtggttatttgaactgaacactgggagaacctgtttgtcaggtacttgccacagagatcactatccagagaacaaacatggtgactcagggacttacaatgttgttggcagatctgtttaaaacatgacctattttttttaaagtttcatccaatacgtcagtgtttgctgaataaatatgttgctttacaggaaagaaatagaaaactgtgatgagatcattaaaagtgggtaatgtaaagatgatgtaaatgtgtcacaacagttaaaaatattgttaatgttcttttttccctgagaatctcaaattaaatggtttttaaagatggttttgatttgaagtgttgatgttgttagttcactgtcccacaaacctcacagtgttgtgttttctccagttatgagcgggaagaaagggtcaaattacaataagtgtctgaagacggacaaaatgttcaaaatgacaactttttccactaagtgttttcccaatgatttactttcacattcttctctagagcaactttctgtattgtgagcagtacaaggaaataaagataactgttgattaggattattaaagtttacactgattcttcgaacaagaaacaataataacattaataatacatttgcaagactattcattattcaaaagaaaaagaaaacatacaataaaagggccaattaaaccgataatcgtcattttttaatctaaaagattagtaaaaaatctaaaagagtgatatatcctttgaaaaatagaagataatgttgcaacatcgcataaaaattctgatcaaaaaggtgagtatcagttcaacactgactgcagaaaatcattgctatttgtcagtgcaggtctaaagatgacaccaaactgcagatgacgctttctcttcatttattttccttaaacatcttatttgggaacacatatcttagaattaaaaccagattcttcaccttaatttgtgggctccagtcatcagcagtttaagacctgattacttttgtattttgtatttgtaattcagagctaaatactctgatactgtggtagtcttggtcttcagcctttgctgctacctagtggcactttgccttcatcgctggaaaatccctaaatatttacctcatgacagcaattacaggaaacaacttgcacataatattacaactatgctggagttttacaccacagt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]