2025-01-31 02:57:40, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_067595367 3058 bp mRNA linear VRT 22-AUG-2024 DEFINITION PREDICTED: Thunnus thynnus claudin-4-like (LOC137186432), transcript variant X1, mRNA. ACCESSION XM_067595367 VERSION XM_067595367.1 DBLINK BioProject: PRJNA1130912 KEYWORDS RefSeq. SOURCE Thunnus thynnus (Atlantic bluefin tuna) ORGANISM Thunnus thynnus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_089523) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963924715.1-RS_2024_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/03/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3058 /organism="Thunnus thynnus" /mol_type="mRNA" /db_xref="taxon:8237" /chromosome="7" gene 1..3058 /gene="LOC137186432" /note="claudin-4-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 272 Proteins" /db_xref="GeneID:137186432" CDS 295..1449 /gene="LOC137186432" /codon_start=1 /product="claudin-4-like isoform X1" /protein_id="XP_067451468.1" /db_xref="GeneID:137186432" /translation="
MVSMGRQMLGFALAIIGFLGTIIVCALPMWKVTAFIGANIVTAQVIWEGLWMNCVTQSTGQMQCKIYDSLLALPQDLQAARALVVIAIIVSAFGIILGIAGGKCTNFVEDERAKTRVAIAAGIVFICAGVLILIPVCWSANTIIRDFYNPILTNAQRRELGTMGSMGMQMVGSALALFGWIGVLIACGSPMWRVTAFIGNNIVTSQTMWEGIWMSCVVQSTGQMQCKVYDSMLALSTDLQGARALVVVSIITGIAGLLIAFAGGKCTNFIPEERAKARALVAAGVVLIISGILCLIPVSWTASIIIRDFYNPLLVDAQKRELGASLYIGWGAAALLILGGGLLCANCPPKEDKTPSVKYLINKSSGGHSKEESGRSVTPTKTYI"
misc_feature 304..762 /gene="LOC137186432" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 790..1284 /gene="LOC137186432" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN
tttacggacctaatttacatagagtcatttaagactgatgctcatctcatcgaaactactcccctgtccacatacagataatgtaaagaatctggttgggctggtaaatcaccattgtgctggtttcaggtcagaggggaaggacgttctgactccaccttcgaggaagacatgcttataaccgaaggaagtatgccacagcctttattcaacttcacaactgagccgagctgatcaactcttgaattttttctgcttctgttcagctacaagtgactcaaacaagacctcaacatggtgtcaatgggacgacagatgctgggctttgccttggccatcatcggcttcttggggaccatcattgtttgtgccctgccgatgtggaaggtcacagccttcattggagccaacattgtgacagcacaggtcatctgggaagggctgtggatgaactgtgtgacgcagagtacgggccagatgcagtgtaagatctatgattctctactggctttgccccaggaccttcaggccgccagagctcttgtggtcatcgccatcatcgtctctgcctttggaatcatcctcggcatcgccgggggtaagtgcaccaactttgttgaggacgaacgtgccaaaaccagggtggccatcgctgctggaattgtcttcatctgtgccggcgttctgatcctcatccccgtctgctggtctgccaacaccatcatcagagatttctacaatcccatcctgaccaatgctcagaggagggagctggggacgatgggctccatggggatgcagatggtaggcagcgccttggcccttttcggctggatcggggtgctcattgcgtgcggctcacccatgtggcgggtcaccgccttcattggcaacaacatagtgacctcccagaccatgtgggagggcatctggatgagctgtgtggtccagagtacaggccagatgcagtgtaaggtctacgactccatgctggctctgagcactgacctccagggggctcgggcactagtggtggtttctatcatcacaggtatcgcagggctcctcattgccttcgctggtggaaaatgcaccaacttcattccagaggagagggccaaggcgagggctttggtggcagcaggcgtggtgctgatcatcagtgggattctctgcctcattcctgtatcctggaccgccagcattattataagggacttctacaaccctctgctggtagacgcccagaaaagagagctgggagcctctctttacatcggctggggggctgcagcactgctgatcctgggaggggggcttttgtgcgccaactgcccccccaaagaggacaagaccccctctgtgaagtacctcataaacaagtcttcaggaggacacagcaaagaggagtcaggccgatctgttacaccgacaaagacttacatttgacatttctgaaggtacaaatggaagtctgttaatgattttatcttcaagaatagaaactttaatcggtcgctgtgaaacgtcaagaacaaggacccacaatgaaggaaatatgcactttgtctttataagagaatcactctttggatgtatgaagatgttttctgtctgataaatattgatgttactcttggtactgaacatgtatatgggggtagtttaaatcatagaaactgttttaaatgtttggttgattccaatttaaaacttaacttttttgcactgagcatcattttgttctttgatatttgtgattatatttttttcccagtaaacgaccttgtattgtacatttttcttcttcttctctcgtgcttcttgtttgtatacatttgaaaaatgcaccagtggttatttgaactgaacactgggagaacctgtttgtcaggtacttgccacagagatcactatccagagaacaaacatggtgactcagggacttacaatgttgttggcagatctgtttaaaacatgacctattttttttaaagtttcatccaatacgtcagtgtttgctgaataaatatgttgctttacaggaaagaaatagaaaactgtgatgagatcattaaaagtgggtaatgtaaagatgatgtaaatgtgtcacaacagttaaaaatattgttaatgttcttttttccctgagaatctcaaattaaatggtttttaaagatggttttgatttgaagtgttgatgttgttagttcactgtcccacaaacctcacagtgttgtgttttctccagttatgagcgggaagaaagggtcaaattacaataagtgtctgaagacggacaaaatgttcaaaatgacaactttttccactaagtgttttcccaatgatttactttcacattcttctctagagcaactttctgtattgtgagcagtacaaggaaataaagataactgttgattaggattattaaagtttacactgattcttcgaacaagaaacaataataacattaataatacatttgcaagactattcattattcaaaagaaaaagaaaacatacaataaaagggccaattaaaccgataatcgtcattttttaatctaaaagattagtaaaaaatctaaaagagtgatatatcctttgaaaaatagaagataatgttgcaacatcgcataaaaattctgatcaaaaaggtgagtatcagttcaacactgactgcagaaaatcattgctatttgtcagtgcaggtctaaagatgacaccaaactgcagatgacgctttctcttcatttattttccttaaacatcttatttgggaacacatatcttagaattaaaaccagattcttcaccttaatttgtgggctccagtcatcagcagtttaagacctgattacttttgtattttgtatttgtaattcagagctaaatactctgatactgtggtagtcttggtcttcagcctttgctgctacctagtggcactttgccttcatcgctggaaaatccctaaatatttacctcatgacagcaattacaggaaacaacttgcacataatattacaactatgctggagttttacaccacagt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]