2025-02-01 14:50:45, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_067191174 2812 bp mRNA linear INV 09-AUG-2024 DEFINITION PREDICTED: Acropora muricata protein argonaute-2-like (LOC136922841), transcript variant X2, mRNA. ACCESSION XM_067191174 VERSION XM_067191174.1 DBLINK BioProject: PRJNA1140574 KEYWORDS RefSeq. SOURCE Acropora muricata ORGANISM Acropora muricata Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Acropora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090042) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036669905.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2812 /organism="Acropora muricata" /mol_type="mRNA" /isolate="sample 2" /isolation_source="Coral reefs" /db_xref="taxon:159855" /chromosome="7" /tissue_type="Polyps" /geo_loc_name="China: Spratly Islands" /collection_date="2017-10-20" gene 1..2812 /gene="LOC136922841" /note="protein argonaute-2-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 long SRA reads, 1 Protein" /db_xref="GeneID:136922841" CDS 247..2580 /gene="LOC136922841" /codon_start=1 /product="protein argonaute-2-like isoform X2" /protein_id="XP_067047275.1" /db_xref="GeneID:136922841" /translation="
MKRSGSIIGYRTIHQRLVNHHNLVDFHVTLPMENSKDKTFKVTVKWVAQVSLFALEQALEGKHNQIPFEAIQALDVVLRHLPSMKYTSVGRSFFSPPEGYYHPLESGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKCQPVVEFLCEVLRKSPQDLQRGKLLTDAERMKLSREIKGLKVEITHCGTMKRKYRVINVTKQPAQSLKFPLKQMDTGQQREITVARYFQEKHSKKLQYPHLPCLQVGQEQKHTYLPMEVCNLVAGQRCIKRLTDQQTAKMIRATAKRAPDRENEILNLVRKADFKNDPYAIDFGISISDNMVELSGRVLEAPKLQYGGRDKPKIYPSFGVWDMRGKHLYHGIEIHTWAIACFVNPQDCSDRTLKNFTSQLMKISGETGMPIRSEPCFCRYAKKAEDVEPMFKYLMSTFSNLQLIILVLPGKTPVYAEVKRVGDTALGIATQCVQAKNIAAYKPQTLSNLCLKINAKLGGINSILAPDVRPPVFREPVIFLGADVTHPAAGDGRQPSIAAVVGSMDAHPSRYCASVRVQTHRQEIIAELAAMVRELLIQFYRSTRHKPMRIIFYRDGVSEGQFRQVLCHELKAIREACIKLEVGYQPGITFIVVQKRHHTRFFCQDEKDRCGPSGNVPPGTTVDSGITQCHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNNFKADEIQALTYQLCHTYVRCTRAVSIPAPAYYAHLVAFRARFHLTERERESPESGSSGSAGHGESRNSQILAKAVQVHPEMLKCMYFA"
misc_feature <337..480 /gene="LOC136922841" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 508..660 /gene="LOC136922841" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 664..1029 /gene="LOC136922841" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(820..822,865..867,910..912,922..924,976..978, 997..999,1003..1005) /gene="LOC136922841" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1162..2445 /gene="LOC136922841" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1573..1575,1585..1587,1621..1632,1639..1641, 1663..1665,1672..1674,1684..1686,1696..1698) /gene="LOC136922841" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1777..1779,1783..1785,1993..1995,2413..2415) /gene="LOC136922841" /note="active site" /db_xref="CDD:240015" polyA_site 2812 /gene="LOC136922841" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtgcactactttatcaaagaagaaactcctcaaacaccaacagacctgcccaatttcgtttccaagctggcaagggtgggaattcaccttgaagcatatgaaaatggatatcacattgaaaatcaagaaagcatgaaatcaggttaggcgtacgtcagctgaaaagaattttggtctcgtagaggattaacacgaagaaacaacgccagtgatgtgtaggatattttacacgctgtagaaacagaaatgaaacgcagtggaagcattattggctaccgtacaatacatcaaagactcgtcaatcatcataacctggtggattttcatgtcactcttccaatggagaacagcaaagataaaacattcaaagtgacggtaaaatgggtcgcgcaagtcagcctctttgccctggagcaggcgttggagggcaaacataatcagattccatttgaagcaatccaagcccttgatgttgtgttgaggcatttaccttccatgaaatacacctcagtgggaagatctttcttttccccccctgaaggctactatcatcccctggagagcggccgggaagtatggtttggttttcatcaaagtgtgagaccctcgcagtggaaaatgatgctgaacatcgatgtgtccgcaacagcattttacaaatgtcagcctgtggtggaattcttatgcgaagtccttcggaaatcgccgcaagatcttcaacggggcaaactcttaacagatgcagagagaatgaagctaagtagagaaatcaaaggactaaaagtggaaataactcactgtggcacaatgaagagaaagtacagggttattaacgtaacaaaacaaccggcgcagtctttgaaatttcctcttaagcagatggacacgggacagcaacgagagatcacggtggcgagatacttccaggaaaaacactcaaagaaacttcagtacccgcatcttccctgccttcaagttggacaagaacaaaaacacacttaccttccaatggaagtttgtaaccttgtcgccggtcagaggtgtataaagagactaacagatcagcaaacagccaagatgattcgagccacggcgaagagagctccggacagagaaaacgagattctgaacttggtccgaaaagctgatttcaaaaacgatccgtacgctatcgactttggcatttccattagtgataacatggtggagctgtcaggacgagttctcgaggctcccaaactgcagtacggaggacgggacaaaccgaagatctatcctagctttggcgtgtgggatatgcgtggaaaacacctttaccatggcattgaaatacatacgtgggcaattgcttgttttgtgaatccacaagattgtagtgacagaactctaaagaatttcactagtcaacttatgaagataagcggtgaaactggaatgcccatccgatctgaaccttgtttctgtagatatgccaagaaagcggaagatgttgaaccaatgttcaagtatttgatgtctacgttcagcaatctgcaactaattatccttgtattacccggcaaaactccagtttatgcggaagtgaagagagtaggagacacagcgcttgggatcgcaacccagtgtgtacaagccaagaacatcgccgcatataagccacaaactctgtcgaatttgtgcctgaaaatcaacgccaaattgggtggaatcaacagcattttagctccggacgttcgaccacccgtgtttcgggagccagtcatctttttgggggctgatgttacgcatccagctgccggagacggaagacaaccatccatcgctgccgtcgtaggtagcatggacgcccatccaagccgctattgtgcttcagtacgggtccagacacatcgacaggaaatcatcgctgagttggcagccatggttcgtgaattactgattcaattttatcgttccacaaggcacaaacccatgagaattattttctaccgcgatggagtaagtgaaggccagtttaggcaggtactttgtcacgaacttaaagcgatccgagaagcttgtataaaactagaggttggctatcaacctggtatcacatttattgtggttcaaaagagacatcacacaagattcttctgccaggacgaaaaagatcggtgtggtccaagcggaaatgttccccctggaacaactgttgacagtgggattacacaatgtcatccttctgagttcgatttttatctttgtagtcacgccggaattcaggggacaagccgaccttcgcattatcatgttctttgggatgataataacttcaaagccgatgagattcaggccctgacctaccagctgtgccacacttacgttcggtgcacccgtgcggtgtctattccagcccccgcttattatgctcatttggtggcattcagagcacggttccatttgaccgaaagagagcgagaaagtcccgagagtggatcatccggtagcgccggccatggggaaagcaggaattcgcaaatcttagccaaagcggtccaagttcacccggagatgctaaaatgcatgtacttcgcttgaagacgcattgtgtaatacaacatgaacaaagcactgtatgatatttttctttatttagtttcttattttaaattccttgtatatatcgagcaaactggacgagtttcttttcaagtggaggcgcattgcgtaagaaacaaaaaaatgatgatatcttttcagacttgtctagatgaatttcctttgtagataatgtacatcctctagtcaaccaataaacgaaataagaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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