2025-01-30 21:43:37, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_066836429 3018 bp mRNA linear PLN 31-JUL-2024 DEFINITION Apiospora aurea protein argonaute (PG986_000207), partial mRNA. ACCESSION XM_066836429 VERSION XM_066836429.1 DBLINK BioProject: PRJNA1140273 BioSample: SAMN32709951 KEYWORDS RefSeq. SOURCE Apiospora aurea ORGANISM Apiospora aurea Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae; Apiospora. REFERENCE 1 (bases 1 to 3018) AUTHORS Sorensen,T. TITLE Analysis of 21 Apiospora genomes using comparative genomics revels a genus with tremendous synthesis potential of carbohydrate active enzymes and secondary metabolites JOURNAL Unpublished REFERENCE 2 (bases 1 to 3018) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-JUL-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3018) AUTHORS Sorensen,T. TITLE Direct Submission JOURNAL Submitted (16-JAN-2023) Department of Biosciences and Chemistry, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_027117388). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3018 /organism="Apiospora aurea" /mol_type="mRNA" /strain="CBS 24483" /culture_collection="CBS:24483" /db_xref="taxon:335848" /chromosome="Unknown" gene <1..>3018 /locus_tag="PG986_000207" /db_xref="GeneID:92069491" CDS 1..3018 /locus_tag="PG986_000207" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; consensus disorder prediction; Mid domain of argonaute; N-terminal domain of argonaute; PAZ domain; PAZ domain profile.; PAZ_argonaute_like; Piwi domain; Piwi domain profile." /codon_start=1 /product="protein argonaute" /protein_id="XP_066705322.1" /db_xref="GeneID:92069491" /translation="
MSGFNQQGNGPRHAAIERVAGMNLDGSSDRGSVSGSPSRGSHHSRSGSTAGSQTGSQAGEGSRSRSGSTASGPGKQQSPFPPGTGVDPARMGGDGREPLTDEQLIGKRIDLPAEAYKKFDGSFTQFAKRPGFSTDGKGIQVQVNIFPVTKWPTGDIVQYDVNVSPNDKDSRALVRKVWESAPVQAELKKTGSKWLFDGHKLAWSTAKFPRGEARVAVDLDRLAGKEPRPGKAGVYYIQIRQATWIRMQVLQDYLQRKCDWDKSVLQCMNFLDHLLRQYPSENMISIKRNFYNKKDNPMRLDSYTDVRKGTYSAFRLCEMNNMSKGSGLAVNVDVANTAFWNTMGTLADTARAMLSNPSAHNEKQMVPWPKMAEMLRPVQARDRNGNIVWQQSEPFQKLRRLAKLKITVNHRGKDQSDKVYTIKRIAFEQSMANWGADAQHYTFQRKHKDGKVDPPITIHNYFMQKYKARLQYPDLPLIETMRDGFYPMEACRLQPFQRYTYKLDPEQTSKMIKFAVTRPVQRSAAINTCMQGLHWESDPYFKQYGLQIAQRMLVTPARLLQNPEVHFSGSKINPGMTGRWDLRGKKFLESNPVPIQSWAFIGVGSNDGYTVQEDALKNFAQTFKRAYGQHGGVIRKDPFVKVYPFNVPYPQMCEQAYKECGQHFKATPQVIFFVVSTRNSLVYERIKKNMDCRFCTVSQVMLADHVRKANLQYCGNVAMKVNAKLGGVTCRAAPMGVTSPMPYYSVPTMIIGLDVSHAAPGSGRPSMAAMTVSTDKTATRYAASVQTNGYRGEIVEGINMRFLLGRLLKYWVNTNKCHPKHVYFFRDGVAEGQFGQVIDKEIKEIKRIFRDAGCEVPRVTVMIATKRHHIRFFPNPQDKGSADKNANPLPGTVVILDEANCNPNDLQRMLYHHCYQYQRSTTPVSLHPAVYYSHLASVRAASHEDIAASQKELPSGKAGFPLAKTPSTVYGSGGQNREAPPLLAMENPIADKANIAHINTTMWYI"
misc_feature 385..2811 /locus_tag="PG986_000207" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1615..2832 /locus_tag="PG986_000207" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cl00628" /db_xref="CDD:412485" misc_feature order(2047..2049,2059..2061,2095..2106,2113..2115, 2137..2139,2146..2148,2158..2160,2170..2172) /locus_tag="PG986_000207" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2260..2262,2266..2268,2479..2481,2800..2802) /locus_tag="PG986_000207" /note="active site" /db_xref="CDD:239208" ORIGIN
atgtcgggtttcaaccagcagggcaatggtccgcgacacgccgccattgagcgtgtcgccggcatgaaccttgatggatcttctgatcgtggttctgtcagcggcagtccttcgcgtggttctcaccactcacgctcgggatccactgcgggtagccagactggaagccaagctggcgagggctcccgctcccgatcgggctctaccgccagtggacctggcaagcagcagtcaccttttcctcctggaactggtgttgatcccgctcgcatgggcggtgacggacgtgagccacttaccgatgagcagctcattggcaagcgaattgatctccccgctgaggcctacaagaagtttgatggttcgttcactcagttcgccaagcgacctggcttcagcaccgatggcaagggtatccaggttcaagtcaacatctttccggtgacaaagtggcccaccggagacatcgtccaatatgatgtcaacgtcagccccaatgataaggactcccgagccctcgtcagaaaggtctgggagagcgccccagtccaggctgagctgaagaagacaggcagcaagtggctgtttgacggtcacaagctcgcttggtctacggctaaattccctcgtggagaggcacgagttgctgttgatctggaccgacttgcaggcaaggagccccgacctggcaaggctggtgtatactacattcagatccgacaggcaacgtggattcgcatgcaggttctccaggactaccttcaacgcaaatgcgactgggacaagtctgtacttcagtgcatgaacttcctggaccatctcttgcgccagtatcccagcgagaacatgatctctatcaagcgtaacttctacaacaagaaggacaacccaatgcgcctcgactcctacaccgatgtccgcaagggcacttactccgctttccgtctgtgtgagatgaataacatgagcaagggtagtggcttggcagtcaatgtggatgtggccaacacagcgttctggaacactatgggaacactggccgatacagcacgagccatgctgagcaacccctcggcccacaatgaaaaacagatggttccgtggcccaagatggctgagatgctgcgacctgtccaagcacgggacaggaatggaaacatcgtctggcagcagtcagagcctttccagaagctccgtcgcctggcaaagctcaagatcaccgtcaaccaccgtggcaaagaccagagcgataaggtctacaccatcaagcgaatcgcctttgagcagagcatggccaactggggtgccgatgctcagcactacaccttccagcgaaagcacaaggacggcaaggtggaccctcccatcacaatccataattacttcatgcagaagtataaggcccgcctgcagtacccggaccttccactgatcgagacaatgcgtgatggcttctacccaatggaggcctgtcgtcttcaaccattccagcgatacacatacaagctggatccggagcagacatccaagatgatcaagtttgcggtcacccggcccgttcagcgtagtgctgcaatcaacacttgcatgcaaggtcttcactgggaatccgatccttatttcaagcagtatggtctgcagattgcccagcgaatgctcgtcaccccagcccggctgctgcagaacccagaggttcacttctccgggtcgaagattaatcctggcatgactggccgctgggacctccgaggcaagaagttcctggagtcgaatcctgtgcccatccagtcatgggcctttattggcgtcgggtccaatgacggttacaccgttcaggaggatgcgctcaagaactttgcccagacgttcaagcgcgcttatggtcaacatggtggcgtgatccgaaaggacccgttcgtcaaggtgtaccccttcaacgtcccgtaccctcagatgtgcgagcaggcgtacaaggagtgtggtcagcacttcaaggccaccccccaagtcatcttctttgtggtcagcactcgcaactccttggtctatgagcgaatcaagaagaacatggactgccgattctgcaccgttagccaagttatgctggcagatcacgtccgcaaggccaacctccagtactgcggcaatgtggcgatgaaggtcaatgccaagcttggaggtgtcacctgtcgagccgcccctatgggtgtaacttcccccatgccatactactccgtccccaccatgatcatcggcttggacgtctcccatgccgctcccggtagtggtcgaccctcgatggcagccatgaccgtgtctaccgacaaaaccgctacccgatacgccgcctctgtccaaacaaacggctatcgtggcgagattgtggaaggcatcaatatgcgctttctgcttggtcgtcttttgaaatactgggttaacaccaacaagtgtcatcccaagcatgtctacttcttccgagacggagttgcagagggtcagttcggtcaagtcattgacaaggagatcaaggagatcaagcgcatcttccgagacgccggttgtgaggtccctcgtgtcacggtcatgattgccaccaagcgccaccacatccgcttcttcccgaacccccaggacaagggctcagctgacaagaatgccaaccctctccctggcacagtggtaatcttggatgaagcaaattgtaaccccaatgacctgcagcgcatgctgtaccaccactgttaccagtaccagcgatcaacaactccggtctctctgcatcccgccgtgtactactcgcatttggcatcggtccgtgctgcgtcccatgaggacattgcagccagtcagaaggagcttccctctggaaaggctggtttccccttggccaagacaccctcgactgtctatggatctggaggacaaaaccgcgaggcgcctcctctgcttgccatggagaaccccattgccgacaaggctaacattgcccacatcaacactaccatgtggtacatctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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