2024-05-02 14:55:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_059020041 3334 bp mRNA linear VRT 18-AUG-2023 DEFINITION PREDICTED: Acipenser ruthenus protein argonaute-1 (LOC117968115), transcript variant X3, mRNA. ACCESSION XM_059020041 VERSION XM_059020041.1 DBLINK BioProject: PRJNA1003472 KEYWORDS RefSeq. SOURCE Acipenser ruthenus (sterlet) ORGANISM Acipenser ruthenus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026708149) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_902713425.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3334 /organism="Acipenser ruthenus" /mol_type="mRNA" /db_xref="taxon:7906" /chromosome="Unknown" gene 1..3334 /gene="LOC117968115" /note="protein argonaute-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:117968115" CDS 406..2778 /gene="LOC117968115" /codon_start=1 /product="protein argonaute-1 isoform X3" /protein_id="XP_058876024.1" /db_xref="GeneID:117968115" /translation="
MGWNRGRLEPGWQVPSCPSSCSRCFRLLAGRGSAPSGSPSGCWQTTSRWRSPRWTCTTTRWTSSQRSVPGASTGRWWSTWCSIYLSLYLSVAPCREVVEYMVQHFKPQIFGERKPVYDGKRNIYTVTALPIGNEQVDFEVTIPGEGKDRIFKVSIKWVAMVSWRLLHDALVSGRVPVPLDSVQALDVAMRHLSSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIAEQPRSLSDSQRVRLTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNGSYNLDPYIQEFGIKVKDDMVEVTGRVLPAPILQYGGRNRAVATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEEEYQPGITYIVVQKRHHTRLFCADRSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQWGRQPHLRAE"
misc_feature 748..972 /gene="LOC117968115" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1000..1152 /gene="LOC117968115" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1153..1515 /gene="LOC117968115" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1309..1311,1354..1356,1396..1398,1408..1410, 1462..1464,1483..1485,1489..1491) /gene="LOC117968115" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1648..2745 /gene="LOC117968115" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2059..2061,2071..2073,2107..2118,2125..2127, 2149..2151,2158..2160,2170..2172,2182..2184) /gene="LOC117968115" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
ggggcgctgtgaggattcggtaccgtttccaggcagcgcaggagagaaggaggattgtttcgttgctctgtctttgttcagcagcttggaggctcttgcgcggagagagacgagctgacaaacccgagctgggaggctagatctccgaacagcaaagccatcgagtccgagcagacgagactgcaccgccgagcgcagcaagacgaggggggcgtgcagcgagagctgccgggcttgtagctgtacgctcaccggacacggggtctaggggctccgagaggggacgggggacggaaaagggggtctcgcttgaaggcgcagacaggaggcggggtgcagtgttgatgcgataatattattttataaaattccgaaattctccggagcggctcagcggcagagtgtatgggatggaaccggggacgcctggagccgggctggcaggtcccttcctgccccagcagctgcagcaggtgtttcaggctcctcgccggccggggctcggctccatcgggaagcccatcaggctgctggcaaactacttccaggtggagatccccaagatggacgtgcaccactacgaggtggacatcaagccagagaagtgtccccggcgcgtcaacagggaggtggtggagtacatggtgcagcatctatctgtctctctatctctctgtcgccccctgcagggaggtggtggagtacatggtgcagcatttcaaaccccagatcttcggcgagaggaagccggtctacgatggaaagaggaacatctacacagtgacagcgctgcccatcggcaacgagcaggtggatttcgaggtgacgatccctggtgaagggaaggaccggatattcaaggtgtcgataaagtgggtggcgatggtgagctggcggctgctgcacgacgccctggtcagtggccgggtcccagtcccgctggactctgtgcaggcgctggacgtggccatgcggcacctctcctccatgaggtacactccagtggggcgctccttcttctcccctcccgaggggtactatcacccgctgggcgggggcagggaggtgtggtttgggttccaccagtccgtgcggcccgccatgtggaatatgatgctgaacatcgacgtgtcggccactgcgttttacaaagcccagcctgtgattgagttcatgtgtgaggtgctggatatccgcaacatcgccgagcagccccgatccctcagcgattctcagagggtgcgactcacaaaggaaatcaaaggcctgaaggtggaggtgactcactgtgggcagatgaagaggaaataccgagtgtgcaacgtgacccgtcggcccgccagccaccagacgttccctttgcagctggagaacggccaggcaatggagtgcacggtggctcagtacttcaaacagaagtacagcctgcagctcaagtacccgcacctgccctgcctgcaggtgggccaggagcagaagcacacctacctgcccctggaggtgtgtaacatcgtagcggggcagcgctgtatcaagaaactgacggataatcagacttccaccatgatcaaagcgaccgcgcgctcagcacccgacaggcaggaggagatcagcaggctgatgaaaaatggcagctacaatctggacccgtacatccaggagttcgggatcaaggtgaaggatgacatggtggaggtgacgggcagagtgctgccagcacccatcctgcagtacggaggcaggaaccgagccgtcgccacccccaaccagggcgtgtgggacatgcgggggaagcagttctacaatggcatcgagatcaaggtgtgggccatcgcctgcttcgctccgcagaaacagtgtcgcgaggaggtgctcaagggcttcactgaccagctgcgcaagatctccaaggacgcggggatgcctatccagggccagccctgcttctgtaaatacgcgcagggtgctgacagcgtggagcccatgttccgccacctgaaaaacacctattcagggctgcagctcatcatagtcatcctgcccgggaaaacgcccgtctacgcggaggtgaagcgtgtgggagacactctcctgggaatggccactcagtgcgttcaggtgaagaatgtggtgaagacctccccccagaccctctccaacctctgcctgaaaatcaacgccaagctggggggcattaacaacatcctggtcccgcaccagcgctctgcagtgttccagcagcctgtgatcttcctgggcgctgatgtcacgcacccccctgcaggcgacggcaagaagccctcgattactgcggtggtggggagcatggacgctcaccccagccgatactgtgccacggtgagagtacagcgcccccggcaggagatcatccaggacctggcctccatggtgcgggagctgctcatccagttctacaagtcgacccgctacaagcccaccaggatcatcttctacagagacggggtgccggaggggcagctcccacagatcctgcactatgagctgcttgctatcagagatgcctgcatcaagctggaggaggagtaccagcctggcatcacctacatcgtggtgcagaagcgccaccacacccggctcttctgtgccgaccggagcgagaggattgggaaaagtgggaatataccagcgggaacgacagtggacaccagcatcacacacccgtttgagtttgacttctacctgtgcagccatgcagggatacagtggggaaggcagccacatctcagggcagagtaacgtccgagacccccaggctctagccaaggcagtgcaggtgcaccaggacacgctgcggaccatgtacttcgcctgaacggagccccttccctcacacagagccccagaggcctgtccctgtccctccacagccagggggctgcctctgtacagacagcaaggatccagggagcgggatcgtcttccaagagaacaagcaaaaccttttcatcattcagctacttctgttgttttatatttccacacgagtctgtatgcaatattgaagaaaggagtccttgactgtcgacgcacgcacacacacacatacacaatgacacacgcacacacacacactgacacacacacacacacacacacacacacacactgacacacacacacacacagggtctcgaccacagactgcgttctcttctctggtgagcttcgggaacattttaacgcagcactttcctttagatgtagctgttaagtgttgttgttgatattttattgtagctctggtgtgaggcccaagagcgtgtagggtagaagtagcctccggaggggggag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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