2024-05-04 10:12:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_058428734 2968 bp mRNA linear PRI 26-JUL-2023 DEFINITION PREDICTED: Hylobates moloch retina and anterior neural fold homeobox 2 (RAX2), transcript variant X2, mRNA. ACCESSION XM_058428734 VERSION XM_058428734.1 DBLINK BioProject: PRJNA600985 KEYWORDS RefSeq. SOURCE Hylobates moloch (silvery gibbon) ORGANISM Hylobates moloch Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Hylobates. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026652290) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_009828535.3-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/21/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2968 /organism="Hylobates moloch" /mol_type="mRNA" /isolate="HMO894" /isolation_source="EBV transformed lymphoblastoid cell line" /db_xref="taxon:81572" /chromosome="Unknown" /sex="male" /note="Lionel" gene 1..2968 /gene="RAX2" /note="retina and anterior neural fold homeobox 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins" /db_xref="GeneID:116482877" CDS 883..1437 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X2" /protein_id="XP_058284717.1" /db_xref="GeneID:116482877" /translation="
MFLSPGEGPAAEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(964..978,982..984,1033..1035,1051..1053,1090..1092, 1096..1101,1108..1113,1117..1125,1129..1134) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(970..972,979..981,1099..1101,1108..1113,1120..1122) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 973..1131 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
tttttgagacagagtttcactctgtcgcccaggctggagtgcaatggcacgatcttggctcactgcaagctccaccccaccaggttcaagcaattctcctgcctcagcctcccaagtagctgggatttataggcacccactaccacacccggctaatctttgtatttttagtagacagggttttgcctgttggccaggctggtctcaaactcaggagctcaggtgatccacccgcctcggcctcccaaagtgctggggttacaggcgtgagccactgcgcctggctgtgaatggtgaacttctattcatacctcaagacccagctaaaagggtccctaccccttgtgtccagaggagccaactgcagtgccttcacctctggacctcagcttccccaaccgcctctgacatctgtgagttctaagacacctttttctgcccccagcagataaaaatattaaaagtgggcgttcattaagtgccccctgtatgccaatttctgtgcgatgctctgagaagctgaaatccccccagggtaggtcctagtgtggcagttttacagctagggaaactgaagcccagagagggagaggcccttgccatcttatggcgaggggcagtggagcctgtaagactattcccccagccacccacttacagccccagccctctgcccaccctgccctccctcctggctcagaacagcccaggaccgagtgggaggggccgcctcaattaatcaccttgagctaatccttccccacccaaccccgacctggctcggctctggcagggccaggccacagcagactcggcgccgggcccgctggggcaggtgtcccgtggagatcgacggaggggctgccgtgggcggtgggagccatgttcctgagcccgggcgaggggccggcagccgagggtgggggtctggggcccggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctctcactacccggatgtgtacagccgtgaggagctggcggccaaggtgcacctacccgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagctccgagactacctgaggccccagcgctgccgttcgctcgtcctccggccatgtcgctgcccctggagccctggttgggccccggaccgccggccgtaccaggcctcccccgcctcctgggcccgggcccagggctgcaagcgtccttcgggcctcatgcctttggtcccaccttcgcagatggcttcgccctggaagaggcgtccctgaggctgctggccaaggaacacgcacaggctctggacagggcctggccgccggcctgagcctgctgccctcccgggccccctcctccgcccgacccgagaaccggggacatgccctggtgacagccaccacgccttggcctaggtgaaggtcatggagcaaccgtggtcaggccaggccaccaccactggggagcaggaccagagagacaggctgctgggtcccctgcccccatcccatcccccaccccatcgccacccatcctgctgtcagcggaccggcccccagtgtcaggcaggaggtgacccaagtatttctcaggctaggggcggggccctcctcccctcctggggcctcagtctcccgtctatgaattgagcatgggggactctgaggttcacgggctgcgaggctgtgggtgcctgcaaggccgctgactctgtaagatgagtgtaaatctctctgctgatcctaatccccatcagcagagctgcccactctgcaggctcccagtcccctggaaataacaaatagcggcagctcccgcaagcctggtctcctctcaccatgtgcccgccatgtgagcgctcccctctccattacgccctggacctcgcgcacggctgtcagcccattctacagagagggaaaccggggctcgggcaggaagccaggtccccaagttcgcacggccaggagtggatggagctgcttttcagacccatcaccagtcctaccgtccggggcacagcgacaggttctggagggagggtgggtcccgggccaggtgctgatgggcccctcgtgtggaggcgggctgatgctgggcgtgtcattatcgtcagcccctgttcctcacgtccccacagaccccaggccctgtgcctgtcccctgcggaggcacggccagcatctgctctgtccaacccagtcgcattgcccaagagctctgagcaaggaggctgtcgcgggatcgaggactcgctgggactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagcctgggccagcgccaccccccggggacagaagtgcggcgccagggcaggagctgcagtagctaccctccccgtctccagcccaggctccccagatcactcccagatcaccagggcaccccatctctaggcagcacctcacacaccagtcctgtggcccaacacccagccatcacccagtgtcaccgtgcaccaggcactggggatgccgcagtaagcacaagaaagatttttttttcaaaagctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagaccagcctgggtgacatagcaagtccccgtctccacaaatatttttaaaatgtgccgggtgtagtggtgcacacctgtcatcccagctacccaagaagctgagacaagaggatcgcttgagcccaggtcgaggctgcagcgagctgtgatcacaccgctgcactccagcctgtgcaacagagccagaccctgactcaaaacaaataaaaaacaaatccaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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