2024-11-01 08:35:25, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_056162355 4269 bp mRNA linear INV 18-MAY-2023 DEFINITION PREDICTED: Ostrea edulis uncharacterized LOC130054058 (LOC130054058), mRNA. ACCESSION XM_056162355 VERSION XM_056162355.1 DBLINK BioProject: PRJNA970818 KEYWORDS RefSeq. SOURCE Ostrea edulis ORGANISM Ostrea edulis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079164) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947568905.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4269 /organism="Ostrea edulis" /mol_type="mRNA" /db_xref="taxon:37623" /chromosome="1" gene 1..4269 /gene="LOC130054058" /note="uncharacterized LOC130054058; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads" /db_xref="GeneID:130054058" CDS 2977..4119 /gene="LOC130054058" /codon_start=1 /product="uncharacterized protein LOC130054058" /protein_id="XP_056018330.1" /db_xref="GeneID:130054058" /translation="
MIEKIKDYFFKGFSYRLIHYLIQRRFNCNISYNCLKRKIIPRLGLRRRHVDINLDVLFKTAQTEVQNGCSGSENLRRTLKMKYHLNITRCISREIVRILDEDGVKRRKQRRLRRRQYFSKGPNFVWHLDGYDKLKPYGISIHGCIDGFSRRLIWLEADITNKRPEVIAEHYLNAVHDLKGCPQKLRADPGTENGIISTFHAFLKRNRNAVTLGSSTSNQRIERFWGLLRQMKADFWIHHFKGLVYEDLLKTGDQLQILCIQYVYLPMLKKDIKEIMDLWNNHSIRRQKLGDTIPGIPEILYQNPEIVGSSQYVHLVDRDIVPHLQRLVTNNYKEIDKHFIDVASSILDFYELPHPETITDWTTARELYIFLSNCMQQIVN"
ORIGIN
caaggtcacttcaaagttgaccttaaattttgttttgttaaaactttgatattttgcttagtataaggactaggatcatcaaattttgtcagttgatgcatcttaggacctaatatcatgttgtctcaaaagtaggtcatggtgacctattttttaatttcgcaggtaattattattaaatggattttgatgcatatcttggacacttttgagcctatgatcatcaaaagttgtcagttgatggatcatgggaccttgaactacgtcatgtgaaaagtatgtcatcatgacctactttctgaattttatggctaatcatttatgaatacattttaggttgttatttcagataccgagaggtttagaatcatcaaaccttgtaagttgatgcgtctagaggcctcaaaacatatttatttaaaaaagtaggtcacggtgacctactttttttaattttgcagacattcaaatttcacattttcaatcagtttagatgcatattttggacactatgaaagctaggatcatcaaactttgtcagttgatgcatcttgagtcttcatagtttgttgaccaaaaacttttggaatttgacggctatattttaatatttaagatactatttgacttacaattatcaaacactgtcagttgatgcatgttgagtcttcagagtgtgttgactaaaacgtaggtcaccgtgacctatttttggattttgacggctatatttgaatatttcagatactatttgacttacaatcatcaaacttttgtcagttgatgggtcttgagtcttcagagtgtgtcgaccaaaaagtaggtcactgtgacctacttttggaatttgacgtttatatctgaatatttcaaatactatttgacttcaattatcaaactttgtcagttgatgcatcttgagtctttggagtgtgtcgaccaagaagtaggtcactgtggccttctttcggaatttgacagctatatttgaatactatttgacttgtcagttgatgcatcttgagtcttcggtttgtcgaccaaaagtaggtcaccgtgacctacttttggacagttacatttaaattttcaggtactatttgacttaacatcatcaaactttgttaattgatgaatcttggttagtgagaatttttgcctgttctacaatgtatcagaagagcgattctaggcccatgggcctcttgtttatttatctgtcattggggacagtttgtatgaatttggaatgattaaatggactctaactctactattaactaacatatcaaatttaatttacagaaaaataggctaatctctacaccacctttcaagtttcctgttaaatgaatttcttactgaccatccagaatttgttatgttgtctgcaaagtgatattcattcatttcttcctttaattctagagagttcacatcaaggggggtaataattgtgtaaaatagtaggccctagtgtagagttttgaggggttttacaaaaaagggtaaattgtttaactgtatttatttactatatttgtagtataaataactgtcttaaaaacggcatgtagaattaatgtcagccctgctgcgtttcagagaaaatagtgtctgaaaagaagtcataaatgctctttttcaccttaatttatgacttattcttaagaataagcaagaaaatacacattttttcaatcagaagtacaataatctaagtgccttcttgaagttctattcactgtacattgctgggaaattgttttattagaaatatttgtgaaaagattaaaaactcaacatctcatgatttaactgtgggtacggtccgttgccatggaaacaccatgcatggttccagtaattttcacttttttaacattgattatcaccatacacaaaagtgtgagagtttcattcagatttgtgatttttgcactttccacttttttaaagaaaattctcaatggtaactgacagcttctcttaatctgtccaggtacatgtataagcaggtctgtctcctattgtctagttatgctatatgtgaccctcttttatagttatgaagatattatgatcacagtttcagcaaaccaaatatattaaacttctgaaattacatctaattacctaatgaaaattattgataaccaattgatccatatatcataatgaaaaggcttaatttatctttgcaaaaaatatacaaaaataggaaaatggacagtttaaatctcaattgaccagtattgaccacttagggagtattgaccgggatggttaaaaccgctgattaaaaccgagggcggttttaaccgcccaaccctgtgaatacccccaccttaaatggggattggaattactattttatgttttgttgtttgctattattaagtagaatggtagataaaactactttgtgtgcataatgtcatagtaggctctatgttggaccattggtgatgagatgtgatatcttaatctacaaccaggcaccatttcagagttgctcaagagaatcaactactggtactagtaccagtcattgttttgcctttaattttgataagatcatgatctagtattaaaagatgttatatttttaaaaggataatttgaaattctgccatggcaaatttttactttgatgtttaggatttatgaacacaatggtggtaggtgttctgaatctgcactaaagaaattgcaagaaggggtatttcagttataaaaaaattcagaagagatatatcattataaattcccagtaattttatactttattctgctgagataagtccactcatgttatatttcctgatctattgttgatactccaagaagaatttgtaatgtaatctttagttggaatttgaatatagatcgagagctctaagtaagaaggaatgcttttcttaaaaatgaagaattttttctatagccttaagggtatttctgtgcttttcagatatgattgaaaagatcaaagattatttcttcaaaggttttagctacagactcatacattatttgatccaaagaagatttaattgtaatataagttacaattgtctgaagaggaagataattcccaggttaggattacggcggagacatgtagacatcaatttagacgtactttttaaaactgcacagacagaagtacagaatggatgttctggatctgaaaacttgagaaggactttgaaaatgaaatatcatttgaatatcacaagatgtatttcaagagaaattgtgaggattttagatgaagatggtgtaaaaaggagaaaacagagaaggctgagaaggagacagtacttcagtaagggtccaaattttgtatggcatttggatggatatgacaaacttaagccatatggaattagtattcatggctgtattgatggattttctcggaggttaatatggcttgaggcagatataacaaacaagagacctgaggttattgctgaacattatttgaatgctgtacatgatctgaaaggttgtcctcaaaaattaagagctgatccaggcactgaaaatggaattatttccacttttcatgcttttctcaaaagaaatcgtaatgcagtaactctgggaagctccacctcaaatcagagaattgagagattctggggtctactgagacaaatgaaagcagatttttggatacatcatttcaagggattggtatatgaagacctgttgaagacaggggatcaattacaaatactatgcatacaatatgtatatcttccaatgttgaagaaagatatcaaagagataatggatttgtggaataaccactcaattcgacgacagaaattgggagataccattccaggaatcccagaaatcctgtatcaaaatccagaaatagttggttcatcacaatatgtgcatctggttgatagagatattgtccctcatttacagagacttgttactaataattataaggagattgacaaacattttattgatgttgcctcttccatcttggatttttatgaactgccacatcccgagaccataactgactggactactgcccgtgaattgtatatatttctgagcaattgtatgcagcaaatagtaaattaaactgtaataattttcagacacgcttatattactgtattttatattcacacagatggtgttgagagtaattgtcagtcttagctgttgtttttcttgatcttttgtttgtttttgaggggcgggcggggatgataatctatcaattaaatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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