2024-11-01 08:44:13, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_056151036 8631 bp mRNA linear INV 18-MAY-2023 DEFINITION PREDICTED: Ostrea edulis two pore channel protein 1-like (LOC125664453), mRNA. ACCESSION XM_056151036 VERSION XM_056151036.1 DBLINK BioProject: PRJNA970818 KEYWORDS RefSeq. SOURCE Ostrea edulis ORGANISM Ostrea edulis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079164) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947568905.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8631 /organism="Ostrea edulis" /mol_type="mRNA" /db_xref="taxon:37623" /chromosome="1" gene 1..8631 /gene="LOC125664453" /note="two pore channel protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 6 Proteins" /db_xref="GeneID:125664453" CDS 32..2494 /gene="LOC125664453" /codon_start=1 /product="two pore channel protein 1-like" /protein_id="XP_056007011.1" /db_xref="GeneID:125664453" /translation="
MKTNMAGDGERPLRSLQENRRTSSLSESEYEIVNDTGNMGYEFPIRENMSRRENKRLWDLNYQEAAIFLQEGENNDKFYTHPRSFSALPAYQIAHHQWFKVLDLVAALGLLFLAACERPAVPFLTLPVGVHGSLEILGQLILTLQLAIKLRWLGWKTFFRHKRTSIKSATLLIMFIESVVVLIRQTNHFRVTRALRPLFLIDTHHFRGVRRISRQILMSLPPILELIFLLMFFILIFSILGFYLFSQVPNDTYFSTLQDSFISLFVLLTTANFPDVMMPAYADSPWNAAFFIVYLALVLYFLMNLLLAVVYDTFSNLEKRKLKRLYFHKRTGCQHAFKLLVTQQDRNKVSIRNFMGMLKYLKPNKKRLDAYLSFKTLNTSKVGKLSLEEFYNVFSVLDLQWEPKQDEFKIWSTHFKHPFNFIFKKLHDFVNWRWFEVFIYFVIAANFIWILVETITLSKQNINVKHYNFTITWASIIFICIYTIEASVKILAKGPLEYFTTGWDLFDFLVTVTSVIGLLGEYFNDSFFYITVLRPFRLLRLFRMKRSYRDVLGTLFILFSRLISLVVVIMLVYYFFAIVAMECFLYVDLRNCCKNSSVEAFYRYSNESSSLGYYYLNDFRNILISGVTLFELTVVNNWFIIMEGFAHHIGEVSRTFFMTFYLVMMVVMTIVVAFILELFLFRIQYRRKLKLEDIDDHAKQIEHVYLSDEEKEMCENSDHKWTGRYIVLQKDSTDLQTPYLYRGERTRNKIDFSLRMHGDEVKSWLEEEQENRDQTIHTMTELRRRSRPNADLEDLDEDVIPNSSFCNPMAENLQDEMSRS"
misc_feature 431..994 /gene="LOC125664453" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1325..2017 /gene="LOC125664453" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" polyA_site 8631 /gene="LOC125664453" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggaacacccctttttaaattgttccgaatgaatgaaaacaaatatggcgggtgatggagaacggcctcttcgctctctccaagaaaatagaagaacgtctagcctgtcggagtctgaatatgaaatcgtcaatgatacaggcaacatggggtacgagtttcccatcagggaaaatatgtctcggagagagaacaaaaggctgtgggaccttaactatcaggaggcggccatatttctgcaggagggggaaaataacgacaagttctatacccaccccaggagcttcagtgccctgccggcctaccaaatcgcccaccaccagtggttcaaggttctggaccttgtggctgccctgggtctcctcttcctagccgcttgtgaacgaccagctgtgccctttcttactttacctgtcggggtccatggatcgttagaaatcctgggacagctgatcctaactctccagttggctatcaaattaaggtggctcgggtggaaaacattcttcagacacaagagaacatccatcaagtctgctactcttctgattatgttcattgagtctgtcgtggtgctgattcgacagacgaatcatttccgagtcacgagggcgctcagaccactttttcttatcgacacacaccacttcagaggagtcagaagaatcagtcgacagatattgatgtcgttgcctccgattttggaactcatctttcttctcatgttcttcattctgattttttccatactagggttttacctgttttctcaagtcccaaatgacacatatttcagcacactccaggacagcttcatcagtctctttgtcttgttgacgacagccaatttcccagatgtaatgatgcctgcctacgctgactcgccatggaatgctgccttttttatcgtatacctcgctttagtcctgtacttccttatgaatttattactggctgttgtctacgataccttttcgaatctggagaagaggaaattaaagaggttatatttccacaagagaaccggctgtcagcatgcctttaaactccttgtaacacaacaggatagaaataaagtcagtattcgaaactttatgggtatgctcaagtacctaaagccaaataaaaagagattggatgcctatttgtctttcaaaaccctgaatacgtccaaggtcggcaaactgagtctggaagaattttacaatgtattcagtgtccttgaccttcagtgggagcccaagcaagatgaatttaagatctggtcaacacatttcaagcaccccttcaactttattttcaaaaaattgcatgattttgttaattggcgatggtttgaagtgttcatttactttgttatagcggcaaattttatctggatcctggttgagacgattacactttcaaaacagaacatcaatgttaaacattacaactttactatcacgtgggcctccatcatttttatatgcatatacaccatagaagcttcagtcaagattcttgccaaaggtccacttgaatattttacaacaggatgggatttgtttgactttctggtgacggtgaccagtgtcattggtttattaggggagtacttcaacgactcgtttttctacatcacagtcctccggccatttagacttctcagattattccggatgaagagaagttacagagatgtcctaggaacgctgttcatcctcttctccagactcatcagtctggtggttgttattatgctggtttactatttctttgccatcgttgccatggagtgtttcttgtatgtggatctcagaaactgctgcaaaaactccagcgtagaagcattctatagatacagcaacgagtcctcaagtctggggtactactatctcaacgacttcagaaatatacttatatctggggtgacattatttgagctaacagtcgtcaacaactggtttataataatggaagggtttgcgcatcacattggagaagtatcacgcaccttcttcatgacattttacctagttatgatggtcgttatgacgattgtggtggcctttattctagagttgttcctcttccgtattcagtacagaagaaaactgaagctggaggacattgatgaccatgctaaacaaattgaacatgtttatctgagtgacgaagagaaagagatgtgtgaaaacagcgatcataagtggaccggtcgatatatcgtgctgcagaaagactcgacagatcttcagactccctacttgtatagaggtgaaaggaccaggaacaaaatagacttcagtctccggatgcacggcgacgaggtcaagagttggttggaggaggagcaggagaaccgggatcagacgattcacacaatgacagagctccggaggcgaagtcgacctaatgctgatctcgaggatctggacgaggatgttattcccaactcctcgttttgtaaccccatggctgagaacctccaggacgagatgtcgcggtcgtgaggaagaggggggtgtctaacccgtgattgagaatcttcagaacgaggcctcatggtcttgaggaagttttaggtgctacatttatttggcagacacattccaatgactgaggtgtgacaatcatatcaatcagtggtgcgttacgttccagttgaatgatttgtagagtgtcactgtggtgcattacgttccagttgaatgatttgtagagtgtcactgtggtgcttattgttatgcagtcgaggtaaaactctcaatcagttaacattgaaaatgtatacatgtatgtttattgctgtgatcattgttaaacagtgccaaaaactgtttgtttctattttttggtgccatttagttttatatatattacaaatggtgtttttgtgcaatccttcctcatattgaggagaattgtttaatggaaaatgctttttacaccctccgcaaagtttagggggtatactggaatcactttaactgtgtatccatcggtagacataatttgcccagagtacagatttgacactgacgaacagatttgataataagactttctgtatatcgtataatgaagttgtacacttgctgtattgattcagattcttaacattcatgaaagttatggatatttttttttcccttttgaaggatgtgtgtgtgttatgttgtcattgtccattgtatatcttagagaccatttattagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaatttttttcaaatttgttacagggtatcattggcccaagggctttcatacatactaaataaagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattagaaattgttcaaggcattaccctggggcaaagggcatggtctcaaggtcacttcaaagttgacctaaatttaaattttttttaaattccttaaatcttagatattttagtcattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggagcatgggaccttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaaagtaggtcacagtgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcagacactatttgacctacaatcatcaaactttgtcagttgatgcatcttgagtcttcggagtgtatcgaccaaaaagtaggtcactgtgacctacttttggcatttgacagttatatttatatatttcagtcactaattgacctacaatcatcaaactttgacagttgatgcaccttgagtcaatggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcaaatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcaaagggtttcgaccaaaaagtaggtcaacttgacctactttttgaattggacacctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgttcaaagggtgttgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccagaaagtaggtcaccatgacctacgattggaatttgacagctaattttcaatattcagatactaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtataatttatcagaagagcgattctaggcccttgggcctcttgtttttcattgagcacaaattcatcatttcccatcatccaatgtgtcctgctgggggtattagtcaggacagttctagtttacgtcatgaaatattttaatacagctagcatagttgtttttcttaaaattttaaatcaaactgtataagtgattgaaacatgaaagaaccagaaatacatttctggcccagaaattaaagtcatttttctatttcctttaaattcaggtatttctacattgaaaaaatcataaacaaaaataaaaatatattttttgaagttcctgaaactgattctttaaattaatatgatgtctcaaagtttgggatttttttttaactggaaaattgtcaacttttcaggcagttttatgcctaaaatcgcatgcaccatgcattaatcaaactacttgctgatatttacaaagctatgatgtaaagatgaccatatctcaaacacatcatggtctacatacatggcacaaaatttgttaagtagcattagaaaatagctagcattggcttgttgaaaggaaatggtggaaaatgtcatttgttatgatgtcatacatgtacacagtaagtccgagaattatcattagctttgtgcatcacacctatgtattaaatttattcaaacatgtctgttacctaagtacaatgtagtttatgattatggtcacaattggggccagttatgtatatttattagtgaatttagtttttgttttatcagtgttgaagtttacacggtcctgctatactgtgtacgcatgtacacagcaaagtgtcacttcaacccacgatgttggcacttggtgtaatttttgtatcaatatcagtacagattgacattatctttcaatactttcagttgtttacaaattttatgtattcaaattcacttgtgtatttctgtcagcatgccagacgccatgttgatctgtatcaccattttatgcttccccatcaaatgtccataaaattgtctcttttcatccatccattgccaaataattcttatccaaacttttttaaggttaattttttatttaaaaaaatgtccaattaattgttgaggtgttgttgaattttcaactttacttttcacgaaccacggctagtttcaaccaaacatgacacagtgtccttgattaaagggggtttaagtttcttcaaatgaaggactgtgtctcctttcaaggggagataattaggaaaccaccaatgagtgtaggatgggtattcagaaaatcatcagaattttatacggaagcttccttatatacaaaaacatgtatgttcaatcttgactaagaaacaaagttgatgaaattaatatgcaagctttgtcatgttgtgtagattcacatttgtctatcaccctcagggccaatgcagaacttcaaaagaagtttgaagtatatatataggaaaactttttaattgaatacgtggtacaatatatcaaactgatatgcaagaattttcatgcatgaactcaagtttgatcaaacggagactgcctgggtcgcaatagaggttaaaagttcactttctttaaggaattaagaatttcagaaaagcatctattcaacaagcaaagtgtacgattattttgataaacgtaaaaatgtaaatttctttaatgcatgaaactaaaaaagcacagccacgaacaggttttaaattttttactattgatgccctagctaaattaaaccgtctttatcccagtctgagcgaggtgactcagacgagtactggctgctggcagactcatgtcggatacgtctagtttattgtaatgttgttttacattctctatttatagttcggtctttatgagctcttcatttactgaactgttgcagcagattttcatgacaaacttgcaatcttaaaaaaaaatcttttgtgagggttactgagcttttcttttgacaacaaatggtatacacattgtacaacatttactttcattttcacaacaaatagtatacacattgtacaaagtttactttcattttcacaacaaatagtatacacattgtacaaagtttactttcattttcatgcaatatattttatctttgtgttcacaagtttacactcctccatctttagtcctccaacattatctttctcaggctcatttacattgttccatacaaacaatttcttaataattttcaccgaaatatatttaggttcacttgtaagttttatactttacgttcacttgtaagtttcatactttacgttcacttgtaagtttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaagttttatactttacgtttacttgtaagtttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaactttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaagttttatactttacgtttacttgtaagtttcatactttacgtttacttgtaatttaagtttcatacttttcagaaaatcttgttttgatatgacatccaaagaaaacttccaatgttccatccctatgcaatattgtgtaatattaaattgttatgtatttgaatattaatcattcattggcattaaagctacatatttaaagtatttctaaatttgtgacttagcaatttcttaaaggaaaaataaaatctcaatattttaatccttgcatttcaaattgacttgaaaatgcttcagttttaactgcacaagtctgacatagaacctgacaaaggcgtcccagaatattcaaaccttaatcagccttacctatgttgacatctgtttcatagattaattagactttcctatatcagtcttaactgtgttgtattagtacaagtacaaaattgtatgagtacattgtaatgatattgtatgagtacattgtaatgatattgtattagtacaagtacattgtaataatattgtacaagtacagccccatttcttagttgtatcctgtttaatcagttcgtggagaagtgcaatacacacacacgccatcacatacacgtcattgtacacacgtagatttaccaaatctgtcttatctaaatgtcacctttaataagccatctgattttcatgttctttatgtcagcattttcaataacatttgttcacaataactagcagcttcattatgaaattgaatacatctaataatacttgttgcagtttgtagagttattcaaaacaaatagaatgtacagttgaacctccctatctcagacactgataccccgaataccatggatatgtcaaagtgattcagaactcaaatccacttatttctgaagtattataccctcgatatgtcgaatatctttgaagttttttcttggtcccattgagttaacgaggtttgtctgtattttgtgtaaaaatattttatgatatgcactttggaatatgatggtcttgtgtagatttatacacatgtacaaataacacacatagaactttaacgtgtatatttttatacgctggaaacaataaacaatgaagaaaaacaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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