2024-11-01 08:24:35, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_056150591 6300 bp mRNA linear INV 18-MAY-2023 DEFINITION PREDICTED: Ostrea edulis RING finger protein 145-like (LOC125658441), transcript variant X2, mRNA. ACCESSION XM_056150591 VERSION XM_056150591.1 DBLINK BioProject: PRJNA970818 KEYWORDS RefSeq. SOURCE Ostrea edulis ORGANISM Ostrea edulis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079172) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947568905.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6300 /organism="Ostrea edulis" /mol_type="mRNA" /db_xref="taxon:37623" /chromosome="9" gene 1..6300 /gene="LOC125658441" /note="RING finger protein 145-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86 long SRA reads, 2 Proteins" /db_xref="GeneID:125658441" CDS 135..2009 /gene="LOC125658441" /codon_start=1 /product="RING finger protein 145-like" /protein_id="XP_056006566.1" /db_xref="GeneID:125658441" /translation="
MQPLKLKREYLLASVCVILRVPSLFIMEMWFRTDPQRATDAHSVDPGQAELITTVVYYSILVFAVAVLLMPLRKLVALYMYIVSLVLLLMAHHMSQIYVEMEAEESETYILSDYPALKRLGVHLTAQCVLAAFIAYLIDISSWRRFILLIYTLPMIARIAGVPLAAFEHIHHFCTLFTVILIMLFLFNNVGFVLDVMKENLIRWKALADAIGWISLLFTAWHTILLPVQFLVFWLILFGCQLYVYMIKTPASLSQEGWLLFILACVGECCATPISLIALCITIAYASYYILTLTKLYLQGWNAFTVDHDVMRGWTEGFTMMLIAVQTGLLDLKPIQRAFLMCVLLFIVASSLIQSIYEMADPILLSLSASHNKNVFKHVRAVTLFTFLWLFPLYMTYSICQYFDLDFWLLVIMSSCLLTSVQVVGSLVIYTLFMFDGIRTESWESLDDTVYYTRSIVRILEFIVAVFVVCYGMKESIFGEWSWINSSILIIHCYFNVWQRLQSGWRTFLMRREAVKKLASLPSATDQQLQDYNDVCPICYQSLSSAKITPCGHFFHATCLKKWLYVKDTCPMCHKKLHETSEESQNSPDDRPAQDEDVPSENENSDAESDMSNQAESSDDSSDG"
misc_feature 168..1649 /gene="LOC125658441" /note="TRC8 N-terminal domain; Region: TRC8_N; pfam13705" /db_xref="CDD:463960" misc_feature <1611..>1991 /gene="LOC125658441" /note="HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]; Region: HRD1; COG5243" /db_xref="CDD:227568" misc_feature 1734..1856 /gene="LOC125658441" /note="RING finger, H2 subclass, found in RING finger proteins RNF139, RNF145, and similar proteins; Region: RING-H2_RNF139-like; cd16476" /db_xref="CDD:438139" polyA_site 6300 /gene="LOC125658441" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
acttccggttaaagagaaagttaaattaggctcagtcggtgacgttacacgaaaaaattacacatcgacaggttggacgcgaccatggcacgagtggggcagactggggctcgaacacatgacctccaggaaggatgcagccattgaagttgaagagagaataccttttggcttctgtctgtgtgattctgcgggtgccgtctctatttattatggaaatgtggtttaggacggatcctcagagagctacagatgcacattctgttgacccggggcaagccgaactaattacaacagtagtatattactccattttggtctttgctgtggctgttctgttgatgccactgaggaagctagtagccctgtatatgtatattgtcagcctagttctgctgctaatggctcatcacatgtcacagatttatgtggaaatggaggctgaagaatcagagacgtacatcctaagtgattaccctgccctcaagcgattaggcgttcacctgactgcacagtgcgtgctggcagcgttcattgcgtatctaatagacatcagcagctggagacgattcatcctccttatctatacgcttccaatgattgcacggatagcaggagtaccactggctgcattcgaacacatacaccatttttgtacgttgtttacagtgatcttaatcatgttatttttattcaacaatgttggcttcgtgttggatgtcatgaaggaaaacttgattcgctggaaggccttggcggacgccattggctggatctcgctcctcttcacggcttggcacaccatcctcctaccagtacaatttctcgtcttctggttgattctgtttggttgccagctctatgtgtacatgataaagacccctgcaagtctgtcacaggaaggctggctactttttatactggcgtgtgtgggtgaatgctgtgccacgcccatcagtcttattgccctgtgtattacaatagcctatgcatcatactatatcctgactcttaccaaactctatctccagggatggaacgcattcacagtagaccatgacgtgatgcgggggtggacggaaggtttcactatgatgctgatagccgtgcagactggtctcctggaccttaaacctattcagagagcattccttatgtgtgtgctgctcttcatagtggcatcatcactcattcagtccatatatgaaatggccgaccccattctgctttctctcagtgcttcgcacaacaagaatgtcttcaaacatgtccgtgcagtcactctgtttacattcctctggctgtttccactctacatgacatactccatatgccaatattttgaccttgacttttggcttctggtcattatgtccagctgcctcttaacatctgtgcaggttgtggggtcgttagtgatatacactttatttatgttcgatggaatccggaccgagtcgtgggaatcattggacgatacggtgtattatacgcgatcgatagtgagaattctggagttcattgtggccgtgtttgtcgtgtgttacggaatgaaggaatccatctttggtgaatggagttggattaattcatcaattttgattattcactgttatttcaatgtgtggcagagacttcagagtggatggagaaccttcctcatgagaagggaagccgtcaaaaaactggcatcgttgccgtcggcaacagaccaacaactacaggattacaatgacgtctgccccatttgttatcagtctctcagctccgccaaaattactccatgtggacatttctttcatgccacttgccttaagaaatggctgtatgtcaaagacacatgccccatgtgccacaaaaaactgcatgaaacttccgaggaatcccagaattcacctgatgataggcctgcccaagatgaggacgttccatcagaaaatgaaaactccgatgctgagtcggacatgtcgaatcaggcagagtcctcagacgacagctcagatggatgatcattcaacaggtaccacagactccacccctgtgtttagataaacaaaactgtttgtttccagatgtgttgaagcaagataaaactggaatggcaggaattctatcatttttatactcctgtccttagacgggatgtattatggtatggcaatcgtgtccatctgtccgtctgtctgtcctgcttcatgtccggctcgtaactcaaatactatgagaccttgaattattgaactttgtcagctgatatatcttgggtagaaggtgggtcgcgctttaaagttcagtcactgtgacctttcattaagatgatatggccaaatatgacaaaatcctgcccaactcgttaactggacaattatttgatctagaataattaaacttggacagttaatgtgtcttatgaagaagggtgtgtcacaccttacatcagagtcacagtgacctataattaagatgatatggccatatatggtacatgtataaccctttttttgggctcatgtagatatgagtcctttaatcaatgaaatttttcaatttgtgcatctgtatagaaacgtaaattatatcttaaaatcaggtcagtaaaatttttaacacggaaagaattaaaataaaacgacaacaaaaccccccaatttttaaaaatcccaacatatgttggagagtaaaggttcaactcagttcaatgatcattaaatcaggagatactcatttttaaaaaaataaataaaatatagctacataatcctgataacaatatgaatacttattttatttctaacattaatgatatagatatgtgcagtattgaaatgcaaaaacaagcacatcacagaacagatagaggaattgtctgatgggaatgataattgatgtgtaatctatctaattttaatttaaaagacttcactagcctgttggaagtaagccatggtgtttcagagttcagctggagattcaatgaccattttgataagagctaaattacatttgtccagttcaaggttaatatattaatgagtataatcattgtacaacccaacataagtaattaataccatgtggaaaaaaattatctaaatattagggggtgaaacgatacagtaccttttcgattcgattttcgatactttagtctcgattcgatgattttcgattcgatacaatagcatgtaccaaattctttataatgctaagattttttatgtttcgttgtatttattgctctctgcaaataaattctacataatgtaaaaccgtttaacatagagcaacactcttatcacttgtcctaaagccgaaatgtcaccatacccaggatttatacattgggagtgcatttttcaactcgactgcatccattttgatacggcaaagtttactcgtatgttaattaggcaattttcaattccattggctaatcagaaaccgtgttatcaagagcaatgtgtgctatgattttagaaccgtattgaaccgaaacagaccccgaataaatcgaacatcgaatcgagaacaccacattgcgagtcggtcgcatcgcaatgcatcgtttcacccctactaaatatatgtaatgatttgaatatttctagtagttaatcgaacaattccagagatatactaaggaataatcttgattttagcctggacccaaaagcaaagatattggtggaagctttgatccaattaaggttgacgtgattttgtgtcgtgcacttttatctgtttacaatgaaaaataaaaacatctgatgggcgtatcatgtgccgtgcagtgcactttattcatgatgtgcatttcaattctagattgtgaaaatggtattatttgatcacattatttgtatacatggacacgttttaaagatggtattgaactaatccatgtcacatgatatgtgccaattctgaaacttcaacatgcagtgtttttgcatatgaggtctgagtgattactcctatccttatctgtgtgctgtcatcagacaaaggaatatttcatgcatccacaaatgtttctgttgatatggtcagttttactgaagagccaggtacaatgctttcagtaaaaacctcaagtgaaaaattccatcaggtactgtgtatcatggtagacatgtaatatgtgcaatgattcaaaattttccacatttttcaattcagctcatacagagaaatcatgtatttacattttggaaaaattgagaattttactaatttaaaattgggaagttcagagttctgcttccaggaatgaactgtttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaatttctttcaaatttggtacagggtatcattggcccaagggctttcatacatactaaataaagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaatttaaattttttttaaattccttaaatcttagatattttagccattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaagtaggtcacagtgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcatcttcgtcttcggtttgtgtcgaccaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcagacactatttgacctacaatcatcaaactttgacagttgatgcatcttgagtcaacggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatattcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaacttgacctacttttggaattggacacctatatttatatatttcggatactatttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgttcaaagggtgttgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatataattcagatactatttgacctacagtcatcaaacgttgtcagttgttgggtcttgcatgtttgaagggtgttgacgaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgatgaccaaaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatattaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctaggcccttgggcctcttgtttaattgttgcttgtcaacgtaaacagagcagacctaacgctggcctttattagaggtcggtttgcgacactagcaggaacattgtctggcgtctgttgtaaacgtcattacagtacgttgtgcttctagtcatgtacaattttatttccagggtttgtgaataaattaaattttcgtcaatgacaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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