LOCUS       XM_054465717            2395 bp    mRNA    linear   PRI 11-APR-2023
DEFINITION  PREDICTED: Pongo pygmaeus retina and anterior neural fold homeobox
            2 (RAX2), transcript variant X1, mRNA.
ACCESSION   XM_054465717
VERSION     XM_054465717.1
DBLINK      BioProject: PRJNA945458
KEYWORDS    RefSeq.
SOURCE      Pongo pygmaeus (Bornean orangutan)
  ORGANISM  Pongo pygmaeus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pongo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_072392) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_028885625.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Pongo pygmaeus"
                     /mol_type="mRNA"
                     /isolate="AG05252"
                     /db_xref="taxon:9600"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="fibroblast"
     gene            1..2395
                     /gene="RAX2"
                     /note="retina and anterior neural fold homeobox 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 6 Proteins"
                     /db_xref="GeneID:129020846"
     CDS             192..884
                     /gene="RAX2"
                     /codon_start=1
                     /product="retina and anterior neural fold homeobox protein
                     2 isoform X1"
                     /protein_id="XP_054321692.1"
                     /db_xref="GeneID:129020846"
                     /translation="

MPAPVEGTDFPGAGRQAWGSPALCLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPQAMPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALERAWPPA"

     misc_feature    order(411..425,429..431,480..482,498..500,537..539,
                     543..548,555..560,564..572,576..581)
                     /gene="RAX2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(417..419,426..428,546..548,555..560,567..569)
                     /gene="RAX2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    420..578
                     /gene="RAX2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

agacacggcgccgggcccgctggggcaggtgcctcgtggagatcgacggaggggctgccgtgggcggccgtgacagccacagagaggggaaaacagggacggtgacacacacagagagaacgaagagcagacagaggcacagcaggagacccccccaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatttccccggagccgggaggcaagcctggggctcccctgccctgtgcctgccggtagcccccccggccgtctccccgccatctgtcccgctgccgtcccgccaggtgggagccatgttcctgagcccgggcgaggggccggcagccgagggtgggggtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccaactgcaccagctggagcgggcgttcgaggcctctcactacccggatgtgtacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagctccgagactccccgaggccccagcgctgccgttcgctcgccccccggccatgtcgctgcccctggagccctggttgggccccggaccgcaggccatgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcccaccttcgcagatggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggaaagggcctggccgccggcctgagcctgccgccctcccggcccccctcctccacccgacccgagaacccgggacgtgccctggtgacagccaccacgccttggcctaggcgaaggtcatggagcaactgtggtcaggccaggccaccaccactggggagcgggacctgagagacaggctgctgggtcccctgcccccatcccgtcccccaccccatcaccacccgtcctgctggcagcggaccggcccccagtgtcagggaggaggtgacccaaatatttctcaggccaggggcagggccctcctcccctcctgaggcctcagtctcccgtctgttaattgggcgtgggggcctctgaggttcgcgggttgcgaggctgtgggtggtggggccgctgactctgtgagatgagtgtgaatctctctgctgctcctaatccccatcagcagagctgcccactctccaggctcccagtcccccggaaataacaaacagcagcagctcccacgagcctggtctcctctccccgtgcacccgccatgtgagcgctcccctctccgtcgcgccctggacctcgggcacagctgtcagcccattctacagagagggaaaccggggctcaggcaggaagccaggtccccaaggttgcagggccaggagtggatggagctgcctttcagacccatcaccagtcctaccgtccgggcacagcgacaggttctggagggagggtgggccccttgtgtggaggcggactgatgctgggcgtgtcgtcatcttcagcccgttcctcacgtccccacagaccccaggccccgtgcatgtcccctgcggaggcatggccagcatctgctctgtccaacccagttgcattgcccaagagctctgagcaaggaggctgtcgcggcgccgagaacccgctgggactggcaagcacagctggcccagtgcagcaggagggccctgagccatgggatgggacagcctgggccagggccaccccctgggccacagaagtgtggcaccagggcaggagctgcagtagctaccctccccgtctccagcccgggctccccagatcactcccagatcaccggggcaccccatctctaggcggcacctcacacaccagtcctgtggcccaacgcccagccatcacccagtgtcaccgtgcaccaggcactggggacgtggcagtaagcacaagaaagatttttgtttttaaagctaaaccaggccaggtgcggtggctcacacctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagaccagccggggtgacacagcaagaccccatctccacaaacatttttaaaatgtgccaggtgtagtggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcgcttgagcccagaaggtcgaggctgcagggagctgtgatcacaccgctgcactccagcctgtgcaacagagccagaccctgactcaaaacaaataaaaaacaaatctaaaacaaaa

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