2024-11-01 08:47:40, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_048917401 7353 bp mRNA linear INV 18-MAY-2023 DEFINITION PREDICTED: Ostrea edulis uncharacterized LOC125678734 (LOC125678734), transcript variant X7, mRNA. ACCESSION XM_048917401 VERSION XM_048917401.2 DBLINK BioProject: PRJNA970818 KEYWORDS RefSeq. SOURCE Ostrea edulis ORGANISM Ostrea edulis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079165) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 18, 2023 this sequence version replaced XM_048917401.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947568905.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7353 /organism="Ostrea edulis" /mol_type="mRNA" /db_xref="taxon:37623" /chromosome="2" gene 1..7353 /gene="LOC125678734" /note="uncharacterized LOC125678734; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 long SRA reads, 1 Protein" /db_xref="GeneID:125678734" CDS 297..3806 /gene="LOC125678734" /codon_start=1 /product="uncharacterized protein LOC125678734 isoform X3" /protein_id="XP_048773358.2" /db_xref="GeneID:125678734" /translation="
MEADDDSLRDLVERAKKRPKYVRMVSWEFENETKKPSRQNKRQQKSDQGLEVQEAECEEEEEEEESTSNEECDSESTYYSAEETIHTEEALGEEFSSVSLQDSAAHPYQVQSRYRAPSKKQKRKRRYRMIYCDQTLPFMKEGFGIEEDIQDVVAEIQGKQIHVLREVPSLSILCIKMLRGIRFPVAAMPHLIKSRIYGANVDLQFKKFQYGWLLNFLAFLDKGKVDLNLKSYKDLHRLLMCSIWHPLPYLKQSPQLIERYNKSKITASLMYTSGLVLNLSQEFRSWSLTIYLRIPWLLSALATVVECMLPSQISQRKQWGKNSYQNEGEQLKTATILAVKRVKLALSKRLPDIVDEFLKVALPYAFWARGDIQHATELFCQLSQSENRCRYKALYLNEAGRMHAISGEKSSAAKFYRLAGEAAVTKPKHNKHFREIDGQVLMLLASLNDQGILRDESRSSWNGWRTVYTSDCLESQGAVVHAVEHWLCFHAGSWKGDYLEESLNRLLPLCTQHPEILYHMSLVHALKGDAQSSHDCYCNFRDRVFGSHLPGEGFVQRRSDNLWLPLVQIVKQQGQITCIPVTWRTQLRSLCVQTKPRVTQEADVVSEQLNLRMTPQGFLTGDMQLLLPPTGGIYLDPYTGMITYSNNATEPWRGIMNDPWRLVLPTPLEVYHDEDGVRVQLLMTAQQTVLLDDSGSCTAAHDSPLNDICHLIWSGPDGRKVKVNLTVKFTDLIYKTVEEELNSITFSSEMQRQEALNRLQILYRKGFGMQAKDIESYVHRKYNQKTTDKKKKKREKTYGIKLAFKLRAAPFMFGRAVAMIFDNCIPTITSKFLVIANCSTADLFCKMKIYNINNWNLDLTYHKVQDAIPSLIRPCQNYHGYRVNNADVIHFHFQSPKMRIHVFDQEGSIVDTIPLGSSEKTDVLLKNSIYIGQIYPLIVKDQIIAINEQKRLWCRTGGEDFLSSDIENATSMAAFGDILVVLMEDKVQFVAAHQLRVLGIRLTDNSLRGSSLRIDEKRMAIEQKFDTVQVLATQTFTRDNISYLLCIAALDRTVVCLEVPTDLSKCSEVTVFLTFTLAGYPVEGYIINQASGFLLTFTQHNSLSEAYVEHLCHYSFDGKLLGILPCLGPGPRSFCHAHLPGDPESGGRGLYLYMRDGHNGILGIQLGDH"
polyA_site 7353 /gene="LOC125678734" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gaaaggaagttgcaaaggtatcggtatcaatgaattaatgtgattgaattggacaacttcgataaatgaagcactaggctatatagggagaaaacaggggcggatctaggaattgcggttacgggggatgtcactaaccaggaggcacagtatgtcaaatggattttcaagcatcctcaagtactgtagattcaagtttgtatcatgatccttgtaggaccattattgggactgagtgttgacaaacaactgtggactgtgtggcacatggagctcttgtttaatgaatttttgaaatggaggcagatgacgattccttgcgagatctggttgaacgtgccaaaaagaggccgaaatatgtccgcatggtgtcgtgggagtttgaaaacgaaaccaaaaaacccagccgacaaaataagagacaacagaaatctgaccaaggcctagaggtgcaagaagctgaatgtgaggaagaggaggaggaagaggagtccacctcaaatgaggagtgtgattctgagagtacatattattcagctgaggagaccattcacacagaagaagctttaggggaggagttcagtagtgttagtttacaggacagtgcagcccacccttatcaggttcaaagtcgctacagggctccaagtaaaaaacagaaacggaaaaggcgatataggatgatttactgtgatcaaactctgccatttatgaaagaaggttttggcatcgaagaagacatccaagatgttgtagctgaaattcaggggaagcaaatccatgtgttgagagaagtccccagtctctcgattctgtgcattaaaatgctgagaggaatacgctttccagtggctgccatgccacacttaatcaagtcgcgtatctatggtgctaatgtagatttacaatttaaaaaatttcagtatggatggttgctaaattttctggcttttttagataaggggaaagttgatttgaatttgaaaagctacaaagacctgcacagactcctgatgtgtagtatttggcatcctctgccgtatttaaagcagtccccacagcttatagagaggtacaacaagagcaaaatcacagcctctctgatgtatacaagtggactagtgctaaatttgagtcaggagtttaggtcctggagtttgaccatatatctgcgcattccatggctcctatctgctttggctactgtggtggaatgtatgttaccatcacaaatatctcagaggaagcaatggggaaagaattcctatcagaatgaaggggaacaactcaaaacagccaccattttagctgtcaaaagagtgaaactggccctgtccaaaagacttcctgatattgttgatgaatttttgaaagtggccctaccctatgcattttgggcacgtggagatatccagcatgcaacagaattgttctgtcagctttctcagtcagaaaacagatgtcgttataaagccttgtatttgaacgaagctggaagaatgcatgccatatcaggggagaaaagtagtgctgccaaattttatcgactagctggagaggctgctgtaactaaaccaaaacacaacaaacatttccgtgaaattgatggacaggtcttgatgcttttggcctctctaaatgaccagggtatattgagagatgagtctcgctcgtcctggaatggttggagaactgtgtacacatcagactgcctggaatctcaaggtgctgttgtacacgctgtggaacactggctctgttttcatgctggatcatggaaaggtgactatctggaggaatcactgaataggctccttcctttgtgtacacaacaccccgagattctgtaccacatgtctttagttcacgccctcaaaggggatgctcaaagttcacatgactgttactgcaacttcagagatcgtgtgtttggttctcacctgcccggggagggatttgttcaaagacgttcagacaatctgtggctccctctggtgcaaatagtcaaacagcaagggcagataacctgtatacctgtcacctggagaactcagcttagatcactgtgtgttcagacaaaacctagagtaactcaagaagctgatgtagtatcagaacagctgaatttaaggatgactccacagggatttttaacaggagatatgcagttactgctgccacctactggtgggatctatctagatccttatacaggaatgatcacttacagtaacaatgcaacagagccatggagaggaataatgaatgatccctggagactagttttacccactcctctggaggtctatcatgatgaggatggagttcgagttcagttgttaatgacggcacagcagactgtacttcttgatgactctggctcatgtactgctgcacacgattctccactgaacgatatctgccacttgatctggtctggacccgatggcaggaaggtcaaagtcaacctcactgtaaaattcacagacttgatttacaagactgtggaagaggagctgaattcaattaccttctcctctgaaatgcaacgtcaggaagccctgaacagacttcagatattgtatagaaagggttttgggatgcaagcaaaggatatagaatcttatgtgcatcggaaatataatcagaaaacaacagacaagaagaaaaagaagagagagaaaacatacggcattaagcttgcttttaagcttagagctgcaccattcatgtttgggagggctgtggcaatgatatttgataattgtattccaaccataacgtcaaaatttcttgtgatcgccaactgttctacagcagacttattctgtaagatgaaaatttacaacataaacaattggaatttggacttgacctaccacaaagttcaagatgcgattccttctctcatccgcccctgtcagaattaccatggatacagagtcaacaacgcagacgtcattcattttcatttccaaagtccaaaaatgagaattcatgtatttgatcaagagggttccatagtagacaccataccattaggttcttcagagaagacagatgttcttctaaagaacagtatatatattggacagatttatcctctgatagtgaaagaccagatcattgccatcaatgaacagaaaaggttgtggtgccgcacaggtggggaagatttcctcagttctgatatagagaatgccacatccatggctgcctttggggatatactggtggttttaatggaagataaggtgcagtttgtagcagctcaccagctccgagtgctcggcattcgtctcacagacaacagtctgagggggtcgagtctgaggatagatgaaaagagaatggctatagaacagaagtttgacactgtgcaggtgttggcaacgcagacctttactagggacaacatttcttacctattgtgtattgcagcactggacagaactgtagtttgtctggaagtgcccacagatctatcaaaatgttcggaggtgactgtgtttttgaccttcaccttggcagggtatccagtggaaggctacattatcaatcaagcaagcggatttctcctgaccttcactcaacataactcgctgtccgaggcgtatgttgaacacctgtgtcactacagctttgatggaaagttattggggattctgccctgtctgggccctgggccaaggtctttctgtcatgcccacctcccaggtgacccggagagtgggggtagaggactgtacctgtacatgagggatggtcataatggaatcctaggaattcaactcggtgaccattagctataacaagactctttagaatggaattctacaaaatactctactgctttcatatttgtgatatttgcaacaatttgtttcttttctatccaagtatgacagtgatatgtaattctgcatttatacagggttttttatcattttatgttaacagatagtgtaattgtttgtttctttcaagcataattgtgtcattgtgcagtcttttcctttaacatacatttagcttgattcgttttacaaataagttggtcttgtaaattaggctattagttaagcaattagtaaattagataattaagttacatgtcagatctggtcagtttccaacactgatgcagagaagagggttcaagttataattttgatgtttttttgggggtgaatccacatattgaacaaaaccgcatgttttatatattgaacgaaatgatggtgtgcactttttatagaagaaatattttgtggataacaataaataaccaattcactcatcaaaacgttttaatgctggcacactgccagacgttgatacgttttaatgctggcacactgccagacattgatctgaattacaattttaaaaatggtatgtgtaacattatgaacattatgcaattacagtggcgtagcttccattgaggcaaccgaggcagctgcctcggtaaaaaaaaacaccttttacgttgttaaaatgtcgataccccagaccccctgcctcggtaatattcgaacccaagctacacctatgaattattgatatttttagctcagtaggatggagtagtacaatattcacgaaacatggaaaatattgcacacttctcaggtggctatagtgttgtattgacctaagaaatgtcaataactgttctattatataattgaataattcaaaacatcgaaactggttactaggccctaagaaatgatgcctggttgaccatctttgtatacaaatacagtgcaatacctagagtcaaaattgccttgagatgcaagtttttgtttattagctcttctgagctgtaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaacctcttggccaatttttttcaaatttcttacagggtatcattggcccaagggctttcatacatactaaatagagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaatttatatttccttaaatctttgatattttagtcattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaaagtaggtcacattgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcgctgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcagacactatttgacttacaatcatcaaactttgtcagttgatgcatcttgagtcttcggagtgtatcgaccaaaaagtaggtcactgtgacctacttttggcatttgacagttatatttatatatttcagtcactaattgacctacaatcatcaaactttgacagttgatgcatcttgagtctacggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatatattttcagatactatttgacctacagtcatcaaactttgtcagttgttgggtcttgcatgttcgtagggtttcgaccaaaaagtaggtcaccttgacctacttttggaattggatggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccaaaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatactaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatattaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctacgcccttgggcctcttgttttaagactgaatcatttaaaacactgaaaccatctactagaacatttcagtgacatttatgttacatatatgacatcattacatgcttcctggtgttaaacaacattcagtttgatttgaatacattgcattggatactaataaatgcatcagacgaccttcccatcatttacgagcatgttttgcattttggttataagttgtttcagaaacgaagtgtccatctgatttcttttcaaaatgcacaacatactcgtcacttatgttgtttattaaactaaatataaactctttttttgtcagtgctcagaaattttggaaatattttaactttatgtcaaaccagagatgtatatattaaatatgtcatagaagtctctggtcaaacgatacaaatgtacacaattcctaagtggaactttttttttttactttgataattcctattgattaacactgaaaagttcagaaacgctatataatgtagttgtatttattttgtttcatggcttagaagaccttgtcattgatgtgatgtgtgaaagttggaatttttgaaaattataccgaccttgtgccgttttgtaatcttatttttgacagtcactgtgatatattatacactggtttttcattttatttaaccattatacattatggtatttgtcttgtaatggaggatgaaatgaaatttaaacatgacaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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