2024-11-01 08:39:03, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_046512601 3073 bp mRNA linear INV 26-MAY-2022 DEFINITION PREDICTED: Haliotis rufescens uncharacterized LOC124143575 (LOC124143575), transcript variant X2, mRNA. ACCESSION XM_046512601 VERSION XM_046512601.2 DBLINK BioProject: PRJNA839416 KEYWORDS RefSeq. SOURCE Haliotis rufescens (red abalone) ORGANISM Haliotis rufescens Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025964372) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 26, 2022 this sequence version replaced XM_046512601.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Haliotis rufescens Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3073 /organism="Haliotis rufescens" /mol_type="mRNA" /isolate="VD_foot" /db_xref="taxon:6454" /chromosome="Unknown" /tissue_type="foot muscle" /dev_stage="adult" /geo_loc_name="USA: Van Damme State Park, CA" /lat_lon="39.269 N 123.798 W" /collection_date="2020-02-07" /collected_by="Blythe Marshman" gene 1..3073 /gene="LOC124143575" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:124143575" CDS 194..1906 /gene="LOC124143575" /codon_start=1 /product="uncharacterized protein LOC124143575 isoform X2" /protein_id="XP_046368557.2" /db_xref="GeneID:124143575" /translation="
MTTPIWQNKTNNFLYYGIMGGIDQIPTNFSYQVAALYTSGGGPENSLSTWGFVIRSMIYKHDKTEDHTAKSLGYWTDEGAYYFDKTDGTSTYEDTLINVFSDARNRSIPYRYVELDTWWFTKGQGGGVKEWTAPTDIFPKGIEYVYRSLNVPIVAKNNFWSSDNIYATQNGGTFNFEIEGDMAIPTDETFWDKIFSESKQWGLATYIQDNMTEIFRTFPRMQTDLNFGRDWLVKMADSALRHNITIQYSGATPMMALMALQLPAVTQVRVQRGYGTGSDLSSIPVSSVFSQLLGISAFKDVFLTEDKKGDTGGISASRRSVEAVLSNGPVGIGDQIGHTNTSIVNRMCRADGTVLKPNNAALAIDAQVMQMAFQDGSGPNAEIWATVSGVYEGGSAPKQVYGIIFVSGLKNNFDITPTKAGIGYEYPVSKIFSAADPTKQYDFSDSKAFTIPPCQQDFCMYYASPVLKYKEREVLILGELNKWVPMSVNRVVNVTLGDVITVYVTGQSGETVEIWFADGVRFGALKTILGKDGQGSIIYEIKSHVHNSDLRTASTVSVVMGILATIMVRM"
polyA_site 3073 /gene="LOC124143575" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccaactcagacggtgttatgtgtggattcccgggattccaactggacaccacgcaaaaacttggatacatgtctttcgggggagctgacattacagaacagtccgtcggaaggacggtctggaaggttccagccccttcgcggtgtttgacccgagtggaaattcagtggcatttggacagttggataatgtcatgacaacaccaatatggcagaacaaaaccaacaacttcctgtactatggaattatgggaggaatcgatcagatcccgacaaatttctcctaccaagttgccgcattatatacctcgggaggggggcctgaaaatagtctttcgacgtggggtttcgtaatcagaagcatgatctacaagcatgacaaaaccgaggatcacaccgcaaaatcactcggatactggacagatgaaggggcctactatttcgataagaccgatggcacatcaacgtatgaagatacattgatcaatgtgttttctgatgcacgaaatagaagtataccttacaggtacgtggaactggacacctggtggttcacaaaaggtcaaggcggaggggtcaaggagtggacagcacccacggacatcttccccaagggaattgaatatgtatacagaagtttgaacgtacccatcgttgcgaaaaataatttctggtcaagtgacaacatatacgcaacacaaaatggtggaacctttaattttgaaatcgaaggtgacatggcaataccgacagatgagacgttctgggacaaaatcttcagtgagtcgaagcagtggggactggccacctacatacaggacaacatgacggaaatattccgtactttcccacggatgcagacggaccttaactttgggcgagactggctggttaaaatggcggattctgctttgagacacaacatcaccatccagtatagtggcgccacgcctatgatggcactcatggctctccaactaccggctgtaacccaggtgcgcgtccaaagaggctatggcacagggtcggacctctctagtattcctgtttcttccgtattttcccaacttttagggatatcggcctttaaagacgtgtttcttactgaagacaagaagggagacactggaggaatatctgcgtccaggagaagtgtggaggctgtcctgtccaacggccctgtggggattggtgaccagatcggacatacaaatacttccatcgtcaatcggatgtgtcgggctgatggaactgttctcaagccaaataatgcagcgctcgcaatagatgctcaggttatgcagatggcatttcaagatggcagcggccctaacgccgagatatgggcgacagtctcaggtgtctatgagggtggatccgcgccgaaacaggtgtatgggattatcttcgtttccggtttgaagaataattttgacatcaccccgacaaaagccggtatcgggtatgagtacccagtcagcaagatcttctctgcagcggatcctacaaagcagtacgacttcagcgacagcaaggccttcaccatcccgccatgccagcaggatttctgcatgtactatgcgtcaccagttctaaagtacaaagagagagaagttctgatccttggtgagctcaacaaatgggtaccaatgtccgtcaacagggtcgtcaatgtcaccctcggtgacgtcatcacagtctacgtcacgggtcagtcaggggagactgttgagatttggtttgctgacggtgtaaggttcggggcattaaaaactattctagggaaggatggccagggtagcatcatctatgaaatcaaatctcatgttcacaattccgacctcagaacagcttcaacagtttctgttgtgatgggtatcctagcaaccatcatggtaaggatgtaagaagaaactgattgcgttgctgcttatgttggcaccagatggctaaatcaccacctcttctcattgtgttaatatagtttcacttttttattatatatttaatctcatttcatgtgacagacatgcgactggagactccagcatctgatcgattgttctttttaatttcgctgcggttaaccgatacatattaacctcccaagaagacggagaagaaatgtttgttattttaacataaatgaaaggcgtctcttatacagatataaatatcccaaaatcccaagcaagtctgtgacctgctgtactggtctgaaggcgaggtcactgtgacctgctgtactggtctgaaagcgaggtcactgtgacctgctgtactggtctgaaggcgaggtcactgtgacctgctgtactggtctgaagacgaggtcacagtgacctgctgtactggtctgatggcgaggtcactgtgacctgctgtactggtctgatggcgaggtcactgtgacctgctgtactggtctgatggcgaggtcacagtgacctgctgtactggtctgatggcgaggtcacagtgacctgctgtactggtctgatggcgaggtcactgtaacctgctgtactggtctgatggcgaggtcactgtaacctgcagtactggtctgaaggcgaggtcactgtgacctactgtactggtctgatggcgaggtcactgtaacctgctgtactggtctgatggcgagatcattgttgtcgccattggcccattattgaattttgttaagacagagctatagctgtctttctgttgtatgcgtattctttccacgacaagaaatgttgaaatcgtccacaaacagtgtaccatcaatactattgttaaatactttagtgagaatattaattttatgctgactgacagtatgctgccttgggggacgccctggtcttgatcgaaatgatcagacagggtagagcctacaattttctgttgtttaaaaaatgagatatagactgtggtaatttgttcctcaatccaaattcatgcaaatcttttaaaataccatgtttccacgttgtatcatgtgccttatctaggtcgagaagaatgatgtagtatgttgtttgttgacaatggaatttttaataaatgattctaaatgcaccaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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