2024-04-25 16:24:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041334191 3493 bp mRNA linear PLN 15-SEP-2021 DEFINITION Suillus subaureus NRDE-2, necessary for RNA interference-domain-containing protein (BJ212DRAFT_1316228), mRNA. ACCESSION XM_041334191 VERSION XM_041334191.1 DBLINK BioProject: PRJNA727286 BioSample: SAMN05920861 KEYWORDS RefSeq. SOURCE Suillus subaureus ORGANISM Suillus subaureus Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Boletales; Suillineae; Suillaceae; Suillus. REFERENCE 1 (bases 1 to 3493) AUTHORS Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L., Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Barry,K., Grigoriev,I.V., Stajich,J.E. and Kennedy,P.G. TITLE Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi JOURNAL New Phytol (2020) In press PUBMED 33355923 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 3493) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3493) AUTHORS Kuo,A., Lofgren,L.A., Vilgalys,R., Nguyen,N.H., Ruytinx,J., Liao,H.-L., Branco,S., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Grigoriev,I., Barry,K., Stajich,J.E. and Kennedy,P.G. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (23-APR-2020) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024538558). ##Metadata-START## Organism Display Name :: Suillus subaureus MN1 v1.0 GOLD Stamp ID :: Gp0114556 ##Metadata-END## FEATURES Location/Qualifiers source 1..3493 /organism="Suillus subaureus" /mol_type="mRNA" /strain="MN1" /db_xref="taxon:48587" /chromosome="Unknown" gene 1..3493 /locus_tag="BJ212DRAFT_1316228" /db_xref="GeneID:64628208" CDS 122..3376 /locus_tag="BJ212DRAFT_1316228" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_041199054.1" /db_xref="GeneID:64628208" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Suisub1_1316228" /translation="
MSTPSFSSFPPSFASFPDLDPGPSRNTLDRTRNENSTDAREKDRIVKKDKNRRGSKKLRDQSRKDKKHRTAKHDFEPVLPRQHGHTWKGVSIPDDEKIKAEEDRRLAQSDIQESQWDSPPVFISDRKGDQLNVTYGGIHAGNVPKYHIVDRGRSILGLDGDWAIYRRGKGIEINIGRRHKQPALTDSSVTTLLAAPPSRRIIGSGDSYKHEEVDGFLRLPSDRGHKAAEDYRSVTRQQEHLDSDSQSSASDDDSSGDESETPILTSHQLSFKTLEQQLAANPSSVETWLSLVRHSLSNIPVTSKNATKARAEITLAILTRARAAHPHNRSSRTLFLKYLRAGEEVWHESKIKAEWEEALKLGGIEIWMEWLEWRIRTAAGGVDTSVTDATRVLSALGSSERREIDKLRVVWRVAVAFQQAGYYERATALFQAQAELTFEVPQSLYGLPLELQVESLEEFWESEVPRAGEPGAKGWGDWISRGRPDISGSPLKAVPQMDVDIQSKDPYVQWHYDESRADRTSRVPASADTMSESDPYATVLLSDIKALLLPLRTEGAKNAFRLIWLSVLGFHIPGLAETLSQGSWDDRWSFTYLCSFSRLDSIFPATAGKRQLMADSHAGTLIGREREFSSAFGPIKEWSCNALGPLEWVGQEKWRMWAAVDLQGIDQDFVRAVFKQLRCGREDYEWDVYALAFEAALNIKSALKLSRTFLSTARDSLPHWATHARLERLREHVDDARKIYQTVLVASRHSPSQPFVGQLWWDWAEMEWLSGDQNAALRVIQHSVNIEGAGGMMVLRVKRALDDTISCAHEQWKDREGWIKLRALIELLTSSAQDGALTIFDSQPSVNESSGPRESTMVASLMLLYNHSVMLRSPTPPAVLRDRLQIAVDTYPDNSLVFGMFLEAEKGHGIWGRVRAQLGQSTADGGPKEKSISRRIAEVWVAGWEKGRWQSEIERTRSGLTAAAESERTTGSAILWRIILEFEVRVGELQRAKKLLYRAVNECPLAKDLYMMAFGPLRSVFSARELDGFVDIMAERGIRMRKGVDEYIERMTDGDESGSDSEDLDGSEDEIEHEARQRRLLMPY"
misc_feature 941..1828 /locus_tag="BJ212DRAFT_1316228" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ttgatgatcatcaagtctggacggatttgagaatacagctccttgcacaccacgagccacccagctgacttgactacaacgaccgaattgtttgatgctccttccttgagctccattcgaaatgtccacaccctcattttcgtcttttccaccctcgtttgcctcgttcccagaccttgaccctggaccgagtaggaataccctggaccggacgcgaaatgaaaactccacagacgctcgggagaaagatagaattgttaaaaaggataagaaccgacgtggcagcaagaagttgcgagaccagtctcgaaaagacaagaagcataggacggcaaagcacgacttcgagccggtacttcccaggcaacacggacatacatggaagggagtgagtataccagatgatgaaaaaatcaaggccgaggaggacagacgtcttgctcagagtgatattcaagaaagccaatgggattctcccccagtgttcatctctgatcggaaaggtgaccaactaaatgttacctacggcggtattcacgctggtaatgtcccgaagtatcatatcgtagaccgtggtagaagtattcttggtcttgatggggactgggctatctatcgcagaggtaagggcatagagataaacataggaaggaggcataagcaaccagccctgactgactcaagcgtgacaacattattggcagcacccccgtctcgacgcattattggatccggggatagttacaagcatgaggaggtggacggtttcttgcgactaccctccgaccgtggtcacaaagctgccgaagactatcgttctgtaaccaggcagcaagagcaccttgattcagactcccagtcgtctgcttcagatgatgacagctcaggtgatgagtcagaaacacccattctcacatcacaccagttatccttcaagacactcgagcagcaattggctgccaatccatcttcagtcgagacgtggttgtcactcgtgagacactcattatcgaacattcccgtcacctcaaaaaacgcaaccaaagctcgcgcagagataacacttgctattcttacccgtgctcgtgctgcccatccacataaccggtcatctcgcactctattcctgaagtacctaagggcaggagaggaagtctggcatgagagtaaaatcaaggccgagtgggaggaagccctgaaacttggcggaattgaaatttggatggaatggcttgaatggcggattcgcaccgctgccggtggagttgacacgtcagtcacagatgcgacgcgcgtcttaagcgcgctcggtagctctgaaaggcgtgaaattgataaactacgggtcgtgtggcgagttgcagtcgcattccaacaagcaggctactatgaacgtgccacagccttattccaggcacaagcggaactaacattcgaggtaccccagtcattgtacggacttccccttgaattgcaagtggaatccctcgaagaattttgggagtccgaagtaccgcgcgccggcgagcctggagcgaaaggttggggtgactggatctcacgcggtagacctgatatctccggttccccgctgaaggcggttccccagatggacgttgacatccaatcgaaagatccatatgtccaatggcattacgatgagtctcgcgccgatcgcacatcacgtgtgcccgcctccgcggacacaatgagcgagtctgacccatacgcaacagttctgctttcggatatcaaggcactactattgcccctccgcacggaaggtgccaagaatgcgttccgcctaatttggttatccgttctaggcttccatattcccggtctcgcagaaacgctgtcgcagggatcttgggatgaccgatggtcattcacttacctctgttctttctcgcgattggactcgattttccctgctactgcgggaaagcggcagttgatggctgactctcatgctggcacactcatagggagagaacgagaattttctagcgcgttcggtccgatcaaagagtggagttgcaatgccctcggaccgttggagtgggtaggccaagagaagtggcgcatgtgggctgctgttgatctgcaagggatcgaccaggatttcgtacgagccgtgttcaagcagctcaggtgtggtagggaggactatgagtgggatgtttacgcattagcatttgaggcagctcttaatatcaaaagtgccctaaagctctcgcggacgtttttgtcgacagcacgagattctttaccgcactgggcaacccacgcacgtcttgagcgcttgcgcgagcacgtggatgatgcccgtaagatctatcaaacggtacttgtagcctctcggcactcgcctagtcagcctttcgttggtcagttatggtgggattgggctgagatggaatggctcagtggtgaccaaaatgcggcactacgtgttatccagcactcagtcaacatcgaaggtgcgggtggtatgatggttcttcgtgtaaaacgcgccctcgacgatacgattagctgcgctcatgagcagtggaaggaccgggagggttggataaaactgcgagccttgatcgaactgcttacttcctcggctcaagatggggcactcacgatcttcgactctcagccgagcgttaacgagagttctggtccaagagagagcacgatggtggcatctcttatgctattgtacaatcattcagtcatgctacgaagtcccactccaccggctgtcctgagggatcgactgcagattgccgtcgacacttacccggacaatagcctggtatttggaatgtttctagaggctgagaaggggcatggtatctggggtcgcgtacgcgcccaactcggacaaagcacagctgacgggggcccaaaggaaaagagtatttcacggcgtatcgcagaagtgtgggtggctgggtgggagaaagggcgatggcagagtgagatcgaaaggacgaggagcggacttactgcggctgcggagagtgagaggacgacgggaagcgctattttgtggcgcatcattttggaatttgaggttcgggtcggggagttgcaaagggcgaagaaactgctttacagagcagtgaatgaatgcccgcttgccaaagatttatatatgatggcttttgggccacttcgttctgtgtttagtgctcgcgagcttgatggattcgtggacattatggcagaaaggggtatccggatgaggaaaggtgtagatgagtatattgagaggatgactgacggagatgaaagcggttctgatagcgaagatctggatggttccgaggatgagatcgaacacgaggcgaggcagaggcggctactaatgccatactagtgcttcggtatactgcgaaggctgtatacatacgcttctcccggtgtacaaataaatacaacttgatattgttttggtttatttgtgacgaagacattggagtattgtcacattgag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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