2024-04-25 05:53:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040784179 3138 bp mRNA linear PLN 20-APR-2021 DEFINITION Aspergillus ruber CBS 135680 putative RNA interference and gene silencing protein (EURHEDRAFT_454180), partial mRNA. ACCESSION XM_040784179 VERSION XM_040784179.1 DBLINK BioProject: PRJNA721986 BioSample: SAMN02744096 KEYWORDS RefSeq. SOURCE Aspergillus ruber CBS 135680 ORGANISM Aspergillus ruber CBS 135680 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus. REFERENCE 1 (bases 1 to 3138) AUTHORS Kis-Papo,T., Nevo,E., Wasser,S.P., Weig,A., Persoh,D., Rambold,G., Riley,R., Sun,H., Lipzen,A., Salamov,A., Grigoriev,I.V. and Barash,D. CONSRTM DOE Joint Genome Institute TITLE Genome sequencing and long-term transcriptional adaptation of the halophilic Dead Sea filamentous fungus Eurotium rubrum JOURNAL Unpublished REFERENCE 2 (bases 1 to 3138) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3138) AUTHORS Riley,R., Kis-Papo,T., Nevo,E., Wasser,S.P., Weig,A., Persoh,D., Rambold,G., Sun,H., Lipzen,A., Salamov,A., Grigoriev,I.V. and Barash,D. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-JUN-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024467306). ##Metadata-START## Organism Display Name :: Eurotium rubrum GOLD Stamp ID :: Gi08792 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3138 /organism="Aspergillus ruber CBS 135680" /mol_type="mRNA" /strain="CBS 135680" /culture_collection="CBS:135680" /db_xref="taxon:1388766" /chromosome="Unknown" /teleomorph="Eurotium rubrum" gene <1..>3138 /locus_tag="EURHEDRAFT_454180" /db_xref="GeneID:63699303" CDS 1..3138 /locus_tag="EURHEDRAFT_454180" /codon_start=1 /product="putative RNA interference and gene silencing protein" /protein_id="XP_040639733.1" /db_xref="GeneID:63699303" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR014811" /db_xref="JGIDB:Eurhe1_454180" /translation="
MSSRGNQRGRGGGGRGGSMELPYRPGGDNRGRGDFRGRGDGRGRGDSRGRGRGDGGDRGGRGRGRGDFRGDFRGRGGRGGGPPREQGPRIFTNPSGQAAPSTEVTKIEDATANALAAKNQKTPGQPRYPARPGYGTQGQPIKLYANYFELKSLGKELFRYHVDIGGDSAGRKPTGKKARQVIRLLLDEHFLQHQNSITTDYRSTLVSRIELPNEGTYVVRYRDEHEDEYLENPKVYKVTCQFTGKLNPSDLLDYLTSSNASAMFETKAEVIQAMNIVLGHRPKSDQAIVSVGANRHYAMYPDLAEKCSLGAGLEVLRGFFVSARAATARILVNVQVKYVACYQEGPLANVIFDYQRGNGSNIYKLEAFLKKLRIRANHIVKKNKKGQDVPRMKTIAGLATRADGSSLSQPSKVSHHGAGPRDVQFFLGQPGQQSSSQGQSGQTQGKKGKKHPKAGPAQAGKYITVADFFRQAYNMNLDPKMPVMNVGNRQNPSYLPVEACMVEPGQPAGAKLSGDQTRHMLNFAVRTPALNAGSLVNHGSRVLGFVGQNPTLANFNIQRGPDLVTVPGRVLPAPRVYYKDNRSQQKPVDPMNGSWNMKAIRFSQGTKLASWSWIYFDAPRARQHFNDPDDLTASLKGLAGKLNEMGVATSVPKPGRKINLSGQNTEKEVENAISDMVARHQPTLIFTILHGNDSELYKCVKQVCDVRQGVRNICVLADKLKGANDQYYSNVGLKFNLKLGGANQSLRPADLGIISEGKTMLVGLDVTHPSPGSAGNAPSVAGMVASVDRYLGQWPAEIKIQASRQEMVSDLDSMLNTCLQRWARMNKRNYPENIIVYRDGVSEGQYDIVLDKELPLLKKACEETYPATLTKKSLPRVSIIIVGKRHHTRFYPTTDADADRGANSKNGTVVDRGVTEARNWDFFLQAHSAIKGTARPAHYFTVWDEIFAHQKTPQGSPFKNASDILEDLTHRMCYLFGRATKAVSICPPAYYADLVCERARCYLSQLFDPTPAATPSGSLISGAAGGSELGDVAIHPNVRDTMFYI"
misc_feature 349..3132 /locus_tag="EURHEDRAFT_454180" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1648..3009 /locus_tag="EURHEDRAFT_454180" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2089..2091,2101..2103,2137..2148,2155..2157, 2179..2181,2188..2190,2200..2202,2212..2214) /locus_tag="EURHEDRAFT_454180" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2293..2295,2299..2301,2515..2517,2977..2979) /locus_tag="EURHEDRAFT_454180" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtcctccagaggtaaccaacgaggtcgcggtggaggcggtcgcggtggatcaatggagcttccttaccgccctgggggtgataaccgtggtcgtggtgatttcagaggtcggggtgacggtagaggccgaggtgatagtaggggccgagggagaggtgacggtggagatcgaggagggagaggtcgtggacgaggcgactttcgaggcgactttcggggtcgtggaggtcgtggaggagggcctcctagagaacagggtccccggatctttaccaacccaagcggtcaggctgcaccatcgaccgaagttacaaagatcgaggatgcaaccgccaatgctttggcagccaagaaccagaagactccaggccagcctcgttatccagcacgaccgggatacggaacccagggacagcctatcaagctctacgccaactatttcgagttgaagtccttgggcaaggagctcttccgctaccatgtcgatatcgggggtgattctgccggccgcaagcccaccgggaagaaagcccgacaggtcattcgtctgctgcttgatgagcactttctccagcaccagaacagcattaccacagactatcgctctacgcttgtgtcgcggattgagcttccgaatgagggaacctatgttgtccgttaccgcgatgagcatgaagacgaatacttagagaaccccaaagtctacaaggtcacctgccagttcacaggcaagctcaatccttccgatctgctggattacttgacatcctccaatgcctcagccatgtttgagaccaaggcagaggtcattcaagctatgaacattgtcctgggccaccgaccgaaatccgatcaagccattgtatcggttggtgcaaacagacattacgctatgtacccagacttggcggaaaaatgcagcttgggtgctggcctggaggtccttcggggcttttttgtcagtgctcgtgcagcgacagcccgtatattggtaaatgtgcaggtcaaatatgtggcctgctaccaggaaggcccactggcaaacgttatttttgattaccaacgcggcaacggctcaaacatctacaaacttgaggctttcctcaaaaaattgagaattagggcgaaccacatcgtcaagaagaacaaaaagggacaggatgttcccagaatgaagacaattgcaggcctggccactcgtgctgacggatcgtcactatctcagccttctaaggtgtcccaccacggggctggtcctcgagatgttcagttcttccttggccagccgggccaacagtcatcgtctcaaggccagagcgggcaaacacagggcaaaaagggcaagaaacatcccaaagctggcccagcgcaggctggcaagtacatcaccgtggccgacttctttcgtcaggcgtataatatgaacctcgaccccaagatgcccgtgatgaacgtcgggaacagacagaacccgtcatacctgcctgtcgaggcttgcatggtcgagcccggccagcctgcaggcgccaagctcagcggagaccaaacccgacacatgttgaactttgctgtgcggactcctgcgcttaatgccgggtctctcgtgaaccatggaagtcgcgtacttggctttgttgggcagaaccctactctggcgaattttaacatccagcgcgggcctgaccttgtcactgtccctggccgtgttctccccgcgcctcgtgtctactataaggacaacaggtcgcagcagaaaccggtcgatcctatgaatggtagctggaatatgaaggcaattcgattctcacagggaactaaattggcttcttggtcatggatttactttgatgctcccagggccaggcaacacttcaatgaccccgatgatttgaccgcttccttgaagggtctcgctgggaagttgaacgaaatgggtgtcgcgacatcggtacctaagcctggcaggaaaatcaatctgtccggacagaacacggaaaaagaggttgagaatgcgatttctgatatggtggcccgccaccagcctacgctgatcttcactattctccacggcaatgacagtgaactgtacaagtgcgtgaagcaggtctgtgacgtccgccagggtgtacgcaacatctgcgtactcgctgataagctgaagggggccaacgaccagtactattccaacgtcggtctcaagtttaacctgaagcttggcggggctaaccaatctttgcgaccggcggatctaggtatcatcagcgaaggaaagactatgctcgtgggccttgatgtaacacacccgtcccccggttcggcaggcaatgctcctagcgtggccggcatggttgcctccgtagaccggtacctgggccaatggcccgctgagatcaagatccaagcctcgcgacaggagatggtctccgatcttgactccatgctcaatacatgtctccagcgttgggcccggatgaacaagaggaactaccccgagaacatcatcgtttatcgtgacggtgtctctgagggtcagtatgatatcgtcctcgacaaggaactcccgctcctcaagaaagcctgcgaggagacctacccagcgactttaaccaagaagtctctcccgcgcgtctccattatcatcgttggcaaacgtcaccacacccgcttctaccctacgaccgacgcagatgccgaccgcggtgccaactcgaagaacggcactgtggtggaccgtggcgtcaccgaagcccgcaactgggacttcttcctgcaagcccattcagccataaaaggtaccgcccgtcccgcccactacttcaccgtctgggacgagatcttcgcccaccagaaaaccccacagggatccccgttcaagaacgcctcggatattctcgaagacctaacccaccgcatgtgttatctcttcggacgcgctactaaggcagtcagtatctgcccgccggcgtattatgcggatttggtctgcgagcgagctcgttgttacctgagtcaattgtttgacccgacgcctgcggcgacgccgtcgggaagtctcatcagcggtgctgctggaggctcggaacttggagatgttgcgattcaccctaatgtccgtgacacgatgttctacatctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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