2024-04-24 22:29:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035414175 6769 bp mRNA linear VRT 07-JUL-2020 DEFINITION PREDICTED: Anguilla anguilla testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X4, mRNA. ACCESSION XM_035414175 VERSION XM_035414175.1 DBLINK BioProject: PRJNA643263 KEYWORDS RefSeq. SOURCE Anguilla anguilla (European eel) ORGANISM Anguilla anguilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_049201.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Anguilla anguilla Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6769 /organism="Anguilla anguilla" /mol_type="mRNA" /isolate="fAngAng1" /db_xref="taxon:7936" /chromosome="1" /tissue_type="liver" /dev_stage="adult" /country="Czech Republic: Elbe River" /lat_lon="50.2909 N 14.4971 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" gene 1..6769 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:118225574" CDS 2182..6042 /gene="topaz1" /codon_start=1 /product="uncharacterized protein topaz1 isoform X4" /protein_id="XP_035270066.1" /db_xref="GeneID:118225574" /translation="
MIGQSAKNAPKVVNGAFPVVGLAEIVDNQSHAIETQPGKRMRLSTEIIGSTPHDSEIFREPDTAIQMGCSTTASTSHEKRPLSNTMLHCSTGPGHKSENCKHKDAVQGNISPVVSRIVMVGAEESGHPGESCTDDSVDGETEDENERPNFSSCQRTTPSQVWARPSCARVYISWPFRERLSSTNGWDVSVTSLSVSVPSSANTASLVTLSASPLYNSSVTDTPGSQNASHSCEAADSSPLQGEASDFRDGSEHLRASETNGSISEKHCVSESLSLVNGSGVSAQITLVLQHSGQSAEVVELQQDPKLCSSATDYSSKFVQEQGTCREANLEPQVCESDHLRRQKLLQTKAPPKPSSKSVNQAKSPNGLNFPAPCAPLNGTTKSPHFSSTWKRYIMPSGLAQGEHPRCVSQAQNLRARLEVSTALAQGSSGDDASSMSSDDDLMNEVLAPCGEIMCEIRDTGQSYRCSAPVEEGPSGGTIDLLKAYEQDAIVLDVIQDDPELFGNVPEVVPVVKSETPLASKVIHPAKTYVVKNNHKITWEDAQLSATGSDDLGQQDSRKRVCRSILPIEIDGYSNGDLPMLNGLAGGGFHTESSLPVQKGTTDSPQSSVCEWLWPDFKTSFQGGARLNSGKASACTSDDVWDAGLDGDPVQTNVIKDLSAQSAAWTAGSLSDLSEGSEMYCKFYFSEQYTCYRNVCWFLHLPVEGDEKFCMAAVQKLLSGKSSHLLRAAAVFTGYYRKCAPGVHFEMRTLKSLLSALFNQGIVKDQLSVLRVMTPYKILPPVEFISAMFERVSVWGLRIAVPDLIDVTAKCVEAGQVFTTENFEYMQGRLELLKTPSSQMEVFLNIKYRVRESSVAWTPEVGDLAMALAEVECCKEQQDWTKLGGVFCSVCTSNPSLDELNHLCGRIAMVLLIDTPPTSPLPFCQFVEAVCQGASVGGLVKSLLGRIGVSLLLRYYQTQQWTKGTKLLDALNALKVNYSTLKGLFAGDGSVSRCRVISIAAEVLLGCGSMESALSVLKDNEWILSSPLWQCEEADVVHRHSVLCRLAECATQKSMFEETLEILTNLPDVQDVKVDPAQYNLVFHLHLKACLEKPNLTVASNIAELMFTKKIEVDMCVLQLLIHKLGKQNAWQKARILYRSALSMGCYPQTQMNKYCRILPIPHSLSEVEMTLALEMFMVSNATDIQNPGFFPHALQIVLKWKGGTELVSETDRHAAISRLLSAAQTANPKLVIKYATVNLNQEQVFTLDSISACKWLSRNLDWASKLWLPSDSKPESKISPQALST"
misc_feature 4792..5316 /gene="topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
attcaatatgcaggactaattaagtgtatttattaaagaatgaattgcacgatggcctcgtattttctacccctggaacgctggtcaaaaaaaagtattatcatgtcgttcataggtctcacttattttattggttagttcatttgctgccatctagtggctgctgtagcctactagcaaaccgtcctcttaggacaaaaccacccattcaaataaaacttaacataccaacgttaatgatgaagccatttttacaaaaaacgaattaatatttggatgaagtccatcaatcagacatagtcgtgataactctactagcttgactgcactactgagcaagcagttgcactttacagattagcccaatatggccgtttggcttgatgagtgtctgatggtctgaccttacctgaccaaacctagagactactaataatgatgtcatcttccacttgatgagtcaagggaaatggcaaattaacgtggggctggagtagatggaggtctgaaaattttagtagtgtttacattcggtaacaagccagacgtggacgtttacgagtataagccaattgggcgaaaaccattcacaaagttttttttttttccccagtagggtacagctagcgattagccatagtagggcaacatttaaagcactttaaactaggcgtacctaatatatttatcgagctccagtatttcttgcttttgttgaactaacgtaaagaagttatttcatatcgctagttaaccaagtaactttgcataactataagaacgtagttacagcaaatgccgatctaaaagtcgacactcttttctgtgtttttcttttttttttcattctaattccactgttgcaggcgaaagatgggtaacgttagcatactaatgattggcattggaaaatattgaaacaacgaataacttaagcttgctcgaaactgtggttacttttaatagcaaagatagatccgttgtggttagcttattagccaggcagttactcaagttaaccttatttttcttcgccagtcagtaggttttaaacgttttaatcgtgaaaatgattcagtcgtcctcttctggtagagtcaaattaaaccgaaccaccattcggaaagacagcaccgcattgcctaagaagagacggtcgtttgggggtacaaatctggctaaaactgcaacccaaagaactccagacaatcttactttaaacacaagcgtagagaatacaatcccggagtcaatcggagaaaatacaaatgttctggaactgtccagtataaatattccaaatgactataagaagcagtcaaccgaagaaaaaactaatgggtttgaactgtccagtataaatattcaagttgacggtgagaggcaaatatgtcctacgttttcagaattaaacaaagtgaatgcatcgcccccaaaatccaccaaagtagaattacagcaagcacccgaagaggataaagagacgtcaaatcaagccgagggactcagcaaaggtacagaacagccattagatcctaatttaccatgtgagctgagaaggagaggggcagatccaggcaagagcacctctggtttcggggacatacatgaacgcgctggggggcctaacacaagaagtaaatcttcatcggggaaaacgtctttcaaagcttgtcagttggaaaaaatgaagagcgagagagtgaagagacacagaaaacagatactgaagggaattctgcatttcgcccaaattcacatcagatcttgtgtgaccattctggtgagaataataacaaaaggttaattaaaagcccatgctgtacaacatgttgtgatttcaagtatcttcccccacggatttacagtgcggccaaactacaatctcacaagccaagcaaaaccccagctaaaaatcccattgagcagggattaaaaaaatgggagcctggtgtgggatataatccatttgtgaacctatgtgacattttgaaagtgtcaaaagttcttgctgatcaattagattcaacgtatgtcataaacgaggaactgaaacaaaagcccattagatgttttaagagagatcatggggatctgatccatttagataaccaagatggaccatgcaccagtggagaggcaagacaatcacaggaaatcagtaatcagtacactgctcacatgattggtcagagtgctaagaacgcacccaaagtggtaaatggagcttttccagtagtgggtttagcagagattgttgacaatcagagtcatgctattgagacacagccgggaaagagaatgagattatcaactgaaataatcggcagtacacctcacgattcagagattttcagggaacctgatactgctattcaaatgggatgttcaacaactgcatcaacctctcatgagaagagacccttgtccaacaccatgctacactgttctactggcccaggacataaatcagaaaattgtaagcataaagatgcagtccagggtaacatatctcctgtagtaagccgtatagtcatggtgggggcagaggaaagcgggcaccctggagagtcttgtacagatgactctgtggatggggaaacagaagatgagaatgaaaggcccaacttttcctcctgtcagaggacaaccccttcacaggtatgggctcgcccatcctgcgcccgggtctacatctcctggccttttagggaacgattgtcctctacaaatggttgggatgtgagtgtaactagtctatctgtatcggtgccatcatccgcaaacacagcatctttagtgactcttagtgcttcacctctctataactcttctgtcactgacactcctggtagccaaaatgcatcccattcttgcgaagcggcggactcttcaccattacagggtgaagccagtgactttcgagatggctcagaacacttgagggcatctgaaacaaatggaagcatctctgaaaaacactgtgtctcagaatccttaagccttgttaatgggtctggtgtgtcagcccaaatcacgttagtgttacagcacagtgggcagtctgctgaggttgtggagctccagcaagatccaaaattatgcagttctgccacagattattcgtccaagtttgtacaggaacaaggtacttgtagggaggcgaacttggagccacaggtatgtgaatctgatcatttacgtaggcagaagttgctgcagaccaaggctcccccaaagccgtccagcaagtctgtgaatcaggctaaaagtcctaatggccttaactttccagccccttgcgcccccctcaatggcaccacgaagtctcctcacttcagttccacctggaaaaggtacatcatgccttctggtctagctcagggagaacatccccgttgtgtgagccaggcgcaaaatttgagggctcgtctggaggttagcacagcccttgcgcagggatcctctggggatgacgccagcagcatgtcctctgatgatgacctgatgaatgaggtgcttgcgccctgtggcgagatcatgtgcgagatccgggacacgggacaatcctaccgatgttccgcccctgttgaggaggggccatctggggggacaattgacttgctgaaggcctatgagcaggatgccattgtcctggatgtaattcaggatgacccggagctgtttggaaatgttcctgaagtggtgccagtcgtgaaaagtgaaacccctctggcgtctaaggtcatccatccagcgaagacatatgttgtgaagaacaaccacaagatcacttgggaggatgctcaactaagtgcaactggaagcgatgaccttgggcagcaagattccaggaaaagagtttgtagaagcatcttgcctattgaaatagatggatattctaatggtgatctgcctatgttaaatggcctagcagggggaggatttcacacagaaagcagtcttcctgtacagaagggcaccactgacagtccacagagcagtgtctgtgaatggctctggcctgattttaagaccagtttccagggaggtgccaggttgaactcaggaaaggccagtgcatgcaccagtgatgatgtatgggatgctggtttggatggtgaccctgtccagactaacgtgattaaggatctgagtgctcagagtgctgcttggacagctggatcactcagtgacctgagtgagggtagtgagatgtactgtaaattttacttcagtgaacagtacacctgttacaggaatgtgtgttggttcctgcacctacctgtagagggcgatgagaagttctgcatggctgctgtgcaaaagctcctcagtgggaaatcctctcatttactccgggcagctgcagtgtttactggatactatcggaagtgtgctcctggagtccattttgaaatgcgcacgctgaaatcactcctgtcagctctgttcaatcagggcattgtgaaagaccagctttctgtgcttagagtaatgactccatacaagatactgccaccagtagagttcatctcggcgatgttcgagcgtgtgagtgtgtggggtcttcgaatagcagtcccagaccttatagatgtgacagccaagtgcgtggaagcgggtcaggtgttcaccactgagaactttgagtacatgcaaggtcgtctggagctcctgaaaacacccagcagccagatggaagtcttcctgaacattaaatatagagttcgggagtcgtctgtagcctggacgccagaggttggagatctggctatggcacttgctgaggtggagtgctgtaaagagcagcaggactggaccaagctggggggcgtgttctgctctgtgtgcacgtccaaccccagcctggacgaactcaaccatctctgtgggaggatcgccatggtgctcctcatagacacgcctcccacctccccacttcccttctgtcagtttgtagaagcagtttgtcaaggagcttctgttggtggtttggtcaaaagcttacttggacgcatcggtgtttctttgctgttgagatattaccaaacacagcagtggacaaaggggacgaagctgctggacgccctcaatgctttgaaggtgaattactcgacgctcaagggcctgtttgcaggagacggcagcgtgtcacggtgccgggtcataagcatagccgccgaggtgcttctgggctgtgggagcatggagagcgcgctcagtgtgcttaaagataacgagtggatcctcagctcccccttgtggcagtgtgaagaggcggacgtggtgcaccgccacagcgtgctgtgtcgcctggcggagtgcgccacccagaagagcatgtttgaggagacactagagatcctgaccaatttgccagatgtgcaggatgttaaagttgatcccgcccagtacaacctcgtcttccacctacatctcaaggcctgcttagagaaaccgaatttgactgttgcttcaaacatagcagaactgatgtttacaaagaagattgaagtggatatgtgcgttctgcaattactcatacacaagcttggaaagcagaatgcttggcaaaaggcacgcattctgtacagaagtgcactatccatgggatgttacccacagacccagatgaacaagtactgccgaatcctacccatcccacactctctgagtgaagtagagatgacgcttgccctcgagatgttcatggtgtccaatgccactgacattcagaatcctggtttcttcccacatgctctacagattgtgttaaaatggaaagggggcactgaactggtcagtgagactgaccgccatgcggccattagccgcctcttgtctgcagcccaaactgcaaaccccaaactggtgatcaaatatgccacagtcaacctgaaccaggagcaggtgttcaccctggactccatttccgcctgcaagtggctctcccggaacttggactgggcctccaagctctggctgccctcagactcaaaaccagagagcaagatcagcccccaggctttatccacttagataggaggccacactactgtatataattccttcgtgtaccatatataatacacatgttcttctcaggaaaactttggaacatttgtttgatttattttttcagtttggttcaattaacttcagactcctgcttcctctgaacttgggtgggggttctggctccagttgaacttttcgtaattttgcatcgtgtttccctccatctctcaggtgaatgtttccacctgttgggtgactttccttttacagggtttattcactgaatcacctatgctgcagaaatctggcctccattgtcttggcttgacttgaagtgggtttatagttatagttggagaagtatttttatttaatcttgatttactatatatttttttttacttaatgttaagtagaagacgacatgttaatacttgtattttgtaagtagagtatatgattgcacttggaaattacgtttggccttaaaaattgatgcatttaacaatggatttaccatgtaaatcgtagtattctaattactgtacttaaggagggaattcttaatgtgttctatatttctcaaatataatagtcataaaatcaaatttcagtgcagattctggtattacagctggtaatatatctcctttaccagtaaaacaaatctgcctcaaaaaggcattttcagtttgagtttctgcatgagtttgagtgtcatcaataaaaaaactttttttgtccgata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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