2024-04-19 08:08:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_034759484 4909 bp mRNA linear VRT 31-MAY-2020 DEFINITION PREDICTED: Trachemys scripta elegans testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_034759484 VERSION XM_034759484.1 DBLINK BioProject: PRJNA634151 KEYWORDS RefSeq; includes ab initio. SOURCE Trachemys scripta elegans ORGANISM Trachemys scripta elegans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048299.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Trachemys scripta elegans Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4909 /organism="Trachemys scripta elegans" /mol_type="mRNA" /isolate="TJP31775" /isolation_source="river" /sub_species="elegans" /db_xref="taxon:31138" /chromosome="2" /country="USA" /collection_date="14-Feb-2018" gene 1..4909 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:117871707" CDS 1..4872 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1" /protein_id="XP_034615375.1" /db_xref="GeneID:117871707" /translation="
MLVIFSKKKIIEVKEDSDAQDGKQLDTDLNISKDYNIKKPLVAYSESLQVAKSDGTQSKIPVCPGLKTGSAVQCNRRRNRLTKTRCLQNLDVKVTENKATKSKLVKSKGEKCRETPNYYNSLPSTVGKNPVVKLYDCRYLNTFVKSSVDATNCSYKIGGGFLHVAQGKRETFCPDSVMGQSDMNSKLNVMQMSTQKSISFDKEGICQNRKNCQNENSKCLRERKWSIDRKPRKRMKLFEKSSVRNVLPVMDNKYCEYELHTEDKTATTDPLAVLELNSNETTSSSSFDQKSNPHLEPNTQEAQNGCTASVNRKMHLKPCATEGSSENRLQLSEIAKGEKGGFDSESIEQQDRLNTSNSPEVVTLINDNISDYYNDVSCQKKERIVSNEKLISNVEKLQLYSCQRIIPMSGKNVWPRESCARTSEWFHKNHVSVLEGKTSTSGSQECSYENNTEAVRDMVLTDNSRQLELSMLEAESVKESACKITMDSNIECLTSVRTPESSLLDICGTLRVTCNENLESSVDSSPIASKSEAVHEAQMILNLAVKQKQDDKNKGALAKKNLMMALHDGISEDDNTSKMIVNHKTSMMKKTVTIPNLMKMLYPGNLSNFKIPLRKNKTESRKVDCIRSLDKETYSPLERLHKSAAASARQNRAEENSSIVVSEQQPISEEADISVIPSKENAYQMSSKDFGSGGSESLSNEINILSEHVSTYQCAFLEGELESSALEDVTDSSATAPIEQSRTLDCSSKTVDHSVSLEMHDDDKKKSRMDLAQSKIKNFPDVLKAYEDDILVIDVIQDDPDLFGTTDEGELAFTMNHVTEKHCNISTTSEEKQDVKPKCLILPETKDSRDYFRESPIQESGTLKSVTDSYDALLMANKIQKHDSSSGSCPLGGVIEESFEDGQLIESDELLKDFHMDEKYRFSGKSDAIKEEKVNIHEAEKSNDSKYIEFVSSELQLGLQLPSLQINAYQEETVLKPWISDFRYSGKSSLLPLPNSDCLEPWKMDKNVVVSHLIQQNLGMIELPRKYCRFYFNTLRGCERVECWFWHVPEQGDEKICMAILKTYININESSLLQRSVQIFMNYYREVAPGVHFDSQVLNDLLISLIKCCLLKEVFQLLNVAVMIKMLPAVDVFLKVFEHVASMNIRDAMPSLIDIFYKLFDAGMVFELEHFNCIVKFLHQLQVSSQEINVILNMKSRFQARQFKKNWLCDLNLAIAEIQLCKEKGDWAKLGTLYVNMRIGCENFGDLQKLTLYIADMLTRDSKEERPGVPFCEFAEAVIKNPQYNEADKDFLGRIGISVMYSYHTVQQWSKGRKVLDKLHELQIHFTSLKGLIGPERLASRCQIVNAAAEIFLKSGSLDGATWVLRESEWIINTPLWPCDRMDVLNRHNLLCAIACECLTKNLYRQAFEVLQNLPGFQNCCDTLDVSQYSLLFNKLLDSCIESKGLGISSSVTDFMLSKNIPIDFTLIRGLITALGRSCLWLKARIYYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASNIQSPGATNQILQIVLKRSEEQKVRSKDDYQAAVERLIQAARISNPKLFLKHMTMNINMEQVYSLEHNSALKWLKENMKWAGKVWLFSSH"
misc_feature 3652..4179 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
atgctagttattttctcaaagaaaaaaataatagaagttaaggaagactcagatgcacaggatggaaagcagctagacactgatctaaatatatcaaaagattataacataaagaaaccactagtagcttactctgaatctctccaggtagctaagtcagatggaactcagagcaagataccagtatgcccgggtttaaagacgggatctgcagtacagtgtaacaggagaagaaatagactcaccaagaccaggtgtttacagaatttggatgtaaaagtaactgaaaataaagcgacaaagagcaaactggtaaagtctaagggtgaaaagtgcagagaaaccccaaattattataatagcttgccatccacagtaggaaagaatccagttgtaaaattatatgactgtcgttaccttaatacatttgtaaagtcttcagttgatgcaaccaactgcagttacaaaattggtggtggattcttgcatgtagcacagggtaagagagagactttttgtcctgacagtgttatgggacagagtgatatgaatagcaagcttaatgtaatgcagatgtccacacagaaaagtatatcatttgacaaagaaggaatatgccaaaatagaaaaaattgtcaaaatgaaaacagtaagtgcttgagggaaagaaagtggagtattgatagaaagcccaggaaaaggatgaaactttttgaaaaatcatcagtccggaatgttctcccagttatggacaacaaatactgtgaatatgagttacatacggaagataaaactgccacaacagaccctttagcagttctagagttaaatagcaatgaaactacttcctcatcttcgtttgatcaaaaatcaaatccccatctagaaccaaatactcaagaagcacaaaatggttgtactgcctcggttaatagaaaaatgcacttgaaaccctgtgcaacagaaggtagttctgagaatagacttcagctatctgaaattgcaaaaggagaaaagggtggttttgattcagaaagtatagaacaacaagaccgcttgaatacctcaaatagtccagaagtggttactttgattaatgacaacatttctgattactacaatgatgtcagttgccaaaagaaagagaggatagtgtcaaatgaaaaactgataagtaatgttgagaaattacagctatatagctgtcaaagaataataccaatgtctggtaaaaatgtttggcctcgtgaatcatgtgctaggacttctgaatggtttcataaaaatcacgtgtctgtcctggaaggaaaaacttcaacttctggttctcaggaatgctcatatgaaaacaataccgaagctgtaagagatatggttttaactgataactccaggcaattagagctaagtatgttagaggcagaaagtgtcaaagaatctgcatgtaaaataacaatggattctaacattgaatgtctgacttctgttagaacaccagagtcgtcattattggatatttgtgggactttgagagtcacctgtaatgaaaatctagagtcatcagtggatagtagtcccatagcttctaagtctgaagctgtccatgaagctcagatgatcttaaatttggcagtaaaacaaaaacaagatgataaaaacaaaggcgctttagcaaagaaaaatctgatgatggcactccatgatggtatatctgaagatgacaatacaagtaaaatgattgttaatcataagacatcaatgatgaaaaaaacagttacaattccaaacttaatgaaaatgttatacccgggaaatctatcaaatttcaaaattcctttacgcaaaaataaaactgaatccaggaaagtggactgtattagatcattagataaagaaacatacagtccactggaacgtcttcacaaatctgctgctgcttcagcaaggcagaacagagccgaggagaattcctctatagtagtctctgagcagcaacctatctctgaagaggcagatatctctgtaatcccctcaaaggaaaatgcttaccaaatgagcagtaaggactttggcagtggtggttctgaaagtctttcaaatgaaataaatatactttctgaacatgtttctacatatcagtgtgcttttcttgagggagaattggagtcatctgctcttgaggatgttactgactcttctgctactgcacctatagagcaaagtcgcacactagattgttccagtaaaacagttgaccattctgtttcattagaaatgcatgatgatgataaaaagaagtcaagaatggatcttgcacagagtaagattaaaaactttccagatgttcttaaggcttatgaagatgatattcttgtgattgatgtaattcaggatgaccctgacctttttggaaccactgatgaaggggagcttgcattcacaatgaaccatgtgactgaaaagcactgtaatatcagtactacctcagaggaaaaacaggatgtcaagccaaaatgccttatccttccagaaactaaggattcaagggattactttagagagagtcccattcaagaatctggaacattgaaatctgtcacagattcatatgatgcactgctaatggctaataagattcaaaaacatgattcctcaagtggaagctgtcctttgggaggtgtaattgaggagtcttttgaggatgggcagctgattgaatcagatgaactcttaaaggattttcatatggatgagaagtacagattttcaggcaagtcggacgctataaaagaagaaaaagtaaatattcatgaagctgaaaaaagcaatgattctaaatatatagaatttgtgagcagtgaacttcagttaggattgcaactgccatccctgcaaataaatgcctaccaggaagagacagtactgaaaccctggatcagtgatttcagatactcaggaaaaagctctcttttgccgttgccaaattctgactgtttagaaccatggaaaatggacaaaaatgtggtggtttcccatctgatccagcagaaccttgggatgattgagttgccccgtaaatattgcagattttatttcaatacattgcgtggctgtgagagagtggaatgttggttttggcatgttcctgaacaaggagatgaaaagatttgcatggcaatacttaagacgtatataaatatcaatgaatcaagtttgctacaacgttcagtccagatatttatgaattactacagagaagttgctcctggtgtgcattttgattcacaagtgctgaatgatcttctcatttctttgatcaagtgttgtttgttgaaagaagtatttcagttgttaaatgttgctgtaatgattaaaatgctgccagctgttgatgtattcctgaaggtgtttgagcatgtggcttccatgaatataagagatgctatgccttcattaatagatatcttttataagctttttgatgctgggatggtttttgagcttgaacattttaactgtattgttaagttccttcaccaactgcaagtttccagtcaagaaattaatgttattttgaacatgaaatcaagatttcaggcaagacagtttaaaaagaactggctttgtgacttaaatttggcaatagctgaaattcagctctgtaaagaaaaaggtgactgggccaaattgggaactttatatgttaatatgagaataggatgtgaaaattttggtgaccttcagaaattgactttatatattgctgacatgctaacaagagactccaaggaagagagaccaggagttcctttttgtgaatttgctgaagcagttatcaaaaatccacaatataatgaagcagacaaagatttcctgggaaggattgggatcagtgtaatgtattcttatcacacagtacagcaatggtcaaagggcaggaaggttttggataaactacatgaactgcagattcatttcacaagcttgaaaggacttattggtccagaaaggttagcctcaagatgccaaattgttaatgctgctgcagaaatcttccttaaaagtggaagtctggatggagcaacatgggtattgagagagtcagaatggataataaatacaccattgtggccctgcgatagaatggatgtcctcaatcgacacaacctgctgtgtgcaattgcatgtgaatgtttgaccaagaatctatatagacaagcatttgaagttctgcagaatctaccaggtttccaaaattgttgtgacactctagatgtttcccagtacagccttctttttaacaaacttcttgattcctgtattgagagcaagggccttggtatatcttcttctgtaacagactttatgctgtcaaagaacatccccattgattttactttaattagaggattaattacagcattgggaaggagctgtttgtggcttaaagccaggatctattacaaaagtgctttatcattgggttgctacccaccgctagagggaaatttataccgcaagcttttactgattccttcttacctgtctgagattgagatgttgctggccattgaaatattcctagtttcaaatgctagtaatattcagagtccgggtgccaccaatcagatacttcagatagtactgaaaagatctgaagaacaaaaagtgcggagtaaagatgactatcaagcagcagttgagagactgattcaagctgctcgtatatctaatccaaagctttttcttaagcacatgacaatgaatattaatatggaacaggtttacagtttggaacataattctgctctgaaatggctgaaagagaatatgaaatgggctggaaaggtctggcttttcagtagtcattagttggtaaagacttttttttttttttttttaatagttg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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