2024-04-25 20:51:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_034704452 5275 bp mRNA linear VRT 23-MAY-2020 DEFINITION PREDICTED: Notolabrus celidotus testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X12, mRNA. ACCESSION XM_034704452 VERSION XM_034704452.1 DBLINK BioProject: PRJNA634114 KEYWORDS RefSeq. SOURCE Notolabrus celidotus (New Zealand spotty) ORGANISM Notolabrus celidotus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Notolabrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048287.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Notolabrus celidotus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5275 /organism="Notolabrus celidotus" /mol_type="mRNA" /isolate="fNotCel1" /db_xref="taxon:1203425" /chromosome="16" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="New Zealand: Tauranga" /lat_lon="37.39219 S 176.09222 E" /collection_date="24-May-2018" /collected_by="Simon Muncaster, Erica Todd, Neil Gemmell" gene 1..5275 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:117827731" CDS 341..4771 /gene="topaz1" /codon_start=1 /product="uncharacterized protein topaz1 isoform X12" /protein_id="XP_034560343.1" /db_xref="GeneID:117827731" /translation="
MWKDPWPKVTLCDVVQNFDALSHDCGCMLPDVLKTKVVHCFKQEMRPGFGPGCSDCSEQENKKDAHANTTEKNVCQSKSLTPHDSNITECTDLKSFTNHTPCCFLESWTSEGSATGSASLLLDECTTKRECRTVMKDRNTEQDPGPGYPLTRVGLCRDKRKKLTDCFEDGILPPTPDLDSTNNSKKTIENDKEKTHFWVSSNGQPCSENVQSVGSSNTFSPDVSGNYVHKKPSGRKGSPSKTNAAQMSPELSCQNNEVDSDEPESFTCQRVRVFKRTVLFSCARTYMSWPFTKCSWTLTANAGTSAQSAEHVDDRKEEEDGKCILAERNGTTHDDMSLYSSLGRDMEFAPHLVEAEELQNSLSNPSQYGQNAASPSSSPVNDPKTDSYLSTRSPKALCPSGWKTAPRFSPMSSPFTHSGSSRISYTTSSPTPSVSLLTTVKSVELAEDLSANTLPVLLSPSQVVQPVPRKSLMCDEESQMTRCHNSESYTSFGSFHPITQEEQESDEELLADRFPPKLEPYYKTSPVNHDLVFTENNEDMFSNDFVLLPVLSPVISPTPHFPTTALPQSPVCLDEEEEEINEEPNQHKSLPGCFIPHIVYGNNGKTEDDLVHRSKHFERISRNLISQASLSEQSFPSSDEDLETDDGEHFMQVDKKSEEVSSGSKITPGLDAQAKSCSSSCSDKDDYGAFSDKEQPCLSREELIGPCKRAGPDRAQVKAKAAGDTHQSVWDEFTAFEQDILLVDVIQDDPELFENMPQKSLLKLGPTRISEVLKTRKGQASVDVKKRLTPVNIVFQYDSPDIKDESNSRSWRPQSVRNPATRERITWTAKEKPIRILRQPDANNNHVNGGLERSQPIQTVISLHNHTLALKTPKNGSWNTNLTDAAELRRQQSNAYCRQYFSESLSCGFNMCWFLHVPGDGDEKFCIETVTRFTKNPVCLQKAGAVFTGYYQNNPPGVYFSMPVLLSLLWALLKAGMLSDVFSVLSVSSAHKIVPGHEFVLALFNFVREKSLLSLVPELMQLTFKMASAGLVLSSDCLDCVKNTPEFQKTNSNVSVSDNQNRMPTSGPFPENLKLVHAIVEIELCTKQKDWRQMGEVFRSICQSSQRPNQVERISGRIAIALLSESKDKLSLPFAAFAETVSQNEEEESLSRSFLGRIGVSLMLRYHKTHQWAKGRKVVEVLSSSKVNYSLLKGLFGNEDGASRCCLVTVATELFLLSGSVEGALNTLRENKWFVSSCSWPCEPADLESRIRVLARLAEKSSHRDSFDILSNLPGLKETSNSVDISRYASQFNFHLQVCLDRQMLPVASDTVDFMLSKNLAVDPTMLHMLLDKLGKQNLWHHAREIFRHALSAEYYPGVSAPPGFFSLIIPCRLGEVELALTLEMYITVNATVLLHQPENTSSCLSITLKRTQSCESEYLSAGSRLLSASCIPQPKLIIHYKYVNASQEQVFTLDIPSARFWLRHNHRWANEVWTH"
misc_feature 3584..4108 /gene="topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
tttcccggggctattgtgcttttgtagttttttttgcattatctattgtttctataggcgggaattagctaaacaacacttatttggtgcttcaacccaagacactgaaagaagtacgcactcaaatcccactggacctacggactcagaggggtctttgaggagagctgtcaaagcctcccactgtggtctctgtggggactgtaaatacatttcccctcagcggaagacactgggtaagccaaggcaaaaaagcagtggcccagggccagggcagcctatagttgattttaagcttgaggaaagaaaaacagccccagagatctctcagaagagtgtcatgtggaaagacccttggccgaaggtgacactttgtgacgtagtccaaaactttgatgctttaagtcacgattgtggctgcatgttaccggatgttctcaaaaccaaggttgtgcattgtttcaagcaggagatgagacctggatttggccctggttgttccgactgcagtgaacaagaaaacaagaaagatgcccacgctaatactacagagaagaatgtctgtcagtcaaagagtctgaccccacatgacagcaacattactgagtgcacagacttaaagtcatttaccaatcataccccatgttgtttccttgagagttggacaagtgaaggctctgcaaccggttctgcttctctcttattagatgaatgtactaccaaaagggagtgcaggactgtcatgaaggacagaaatactgagcaggatcccgggccaggctatcccctcacaagagttgggctttgcagggacaagagaaaaaagctgacagattgttttgaagatgggattttgcctcctactccagacctggacagcaccaacaactccaaaaagacaattgaaaatgacaaagagaaaacacacttttgggtgtcttctaatggccagccttgttcagagaatgtccaaagtgttggcagcagcaacacctttagccctgatgtgtcaggaaactatgttcataagaaacctagtgggaggaaaggcagtccctcaaaaaccaatgcagcgcaaatgtcccctgagctgtcctgtcagaacaatgaagtggattcagatgaaccagagtcattcacctgccaaagagtgagggtctttaaaagaacagtccttttttcctgtgcacgcacatacatgtcctggcccttcactaagtgtagctggaccctgacagccaatgcagggacatcagctcagtctgcagagcatgttgatgacagaaaggaagaagaagatggaaaatgcatcttagcagagagaaatgggacaacacacgatgatatgtctttatactcttctttaggaagagacatggagtttgctcctcatttagtggaggcagaagaattacagaattccctttccaaccccagtcagtatggacagaacgcagcctcgccttcatcctcaccagttaatgatcccaaaactgacagctacctatctacccgttcccccaaagcactttgcccgagtggctggaaaactgctcccagattttcccccatgtcatctccatttacacatagtggttcaagcagaatctcgtacacaacatcctccccgacaccttcagtctccttactgaccacagtcaaaagtgtcgagttggctgaggatctatcagccaacacattgccagtgctgctttcaccctcacaagtggtccaacctgtaccaagaaagtcactgatgtgcgatgaggaatcccaaatgactagatgtcacaattctgagtcctacacttcattcggatcgttccaccccatcactcaagaggaacaagagagcgatgaagaacttcttgcagaccggtttcctcctaaactggagccatattacaaaacgagccccgttaaccatgatctcgtcttcacagaaaacaatgaggacatgttctcaaatgactttgtgcttctaccagtgctatctcctgtcatttcaccaacacctcactttccaaccacggcccttcctcaaagtccagtctgtttagatgaagaagaggaggaaataaatgaagaacccaaccaacacaaatcattacctggatgtttcattccacatattgtttatggcaataatggaaagactgaggatgatcttgtacatcgtagcaaacattttgaaagaatctcgaggaatttaatatctcaggcttctctgagtgaacagtcttttccaagcagtgatgaagatctagaaactgatgatggagagcattttatgcaggttgacaaaaaatctgaagaagtttcctcaggctctaaaataacccctggcttggatgcgcaggcaaaatcctgctcctcttcctgcagtgacaaagatgattatggagccttcagtgacaaggaacagccatgtttgtccagagaggagctgataggcccatgtaaaagagcaggccctgatagggctcaagttaaagcaaaggcagctggtgacactcatcagagtgtttgggatgagttcacagcatttgaacaggatatcctgcttgtggatgtgattcaggacgacccagagctgtttgaaaacatgccccagaaaagtttgctgaaactaggtcctaccaggatttctgaggtcctcaaaaccaggaaaggccaggcatcagttgatgtaaaaaaaagattgactcctgttaatattgtttttcaatatgacagtcctgatatcaaagatgagagcaacagcaggtcatggagacctcagagtgtcagaaaccctgccacaagggaaaggatcacatggactgccaaagaaaagccaatccggatcttgcgtcagcctgatgccaacaacaatcatgtaaacggaggcctggaaaggagccagccaatccaaacagtgatctctctgcataatcacacccttgcactgaagactccaaaaaatgggtcatggaacacaaacttgacagacgcagcagagttaaggcgccaacagtcaaatgcttactgcaggcagtacttcagtgagtcgctgtcctgtgggttcaacatgtgctggttcctgcacgtgcctggggatggggacgagaagttttgcatagaaactgtgacacggttcaccaagaacccagtgtgccttcaaaaagcaggggctgtctttacaggctactaccaaaacaacccaccaggagtgtatttttccatgccggttctactatcgctcctctgggctctcctcaaagctggcatgctgtccgatgtgttctcggtcctcagtgtcagctcggcccataagatagtgcctggccatgagtttgtcttagctctcttcaactttgtaagagaaaagagtctcctgagtttggtgcctgaactcatgcagctcacattcaagatggctagtgcaggcctggtgttgagttcggactgcttggattgtgtgaaaaacactcctgagttccagaagacaaactcaaatgtttctgtatccgacaaccaaaacaggatgcccactagtggaccctttccagagaacctgaaattggttcatgccattgtggagatagagctctgtaccaagcagaaggactggaggcagatgggggaggttttcaggtcgatctgccaatccagccagcgccccaaccaagtggagcgaatcagcggtcgcattgccatagcactgctgtcagagagcaaagacaagctgtcactgccctttgctgcatttgctgagacagtttctcagaatgaagaggaggagagcctgagcaggagttttttaggcagaattggtgtctctctcatgttgagatatcacaaaacgcatcaatgggcaaagggtcgaaaggtggtggaagtactgtccagctccaaagtcaactactcattactgaaggggttgtttgggaatgaggatggagcatctcgctgctgcctggtcactgtggctactgagttattcctgctgagtggcagtgtggagggagctctaaacacactccgagaaaacaaatggtttgtgagttcgtgctcgtggccgtgtgagcctgctgatctggagagcaggattcgtgtgttggcacgtctggctgaaaaatcttctcacagagactcgtttgatatcctcagcaatctccctggactcaaggagacgagcaactcggtggatatctcgaggtacgcctctcagtttaactttcacctccaagtgtgcttggacagacagatgcttcctgttgcttcagacacagtggacttcatgctgtctaaaaacctggcagttgatcccactatgctgcacatgcttttggacaaactgggcaagcagaacctctggcaccatgcgcgggaaatcttcagacatgctctaagtgcggaatactaccctggtgtttctgctcctcctggtttcttctcactgatcatcccctgtcggctgggggaggtggagctggctctcaccttagagatgtacatcactgtcaacgcaactgttctcctccaccaaccagagaacacatcctcctgtctcagcattactttgaagaggactcaaagctgtgaaagcgagtacctttccgctggcagtcgcctcttgtcagcatcttgtatcccccagcctaaactaattattcactacaaatatgtgaacgcctcacaggagcaagtcttcaccctggacatcccctcagctcgattctggctccgccacaatcataggtgggccaatgaggtgtggactcattgaaccaggttggcgctgtagtccctctctttgctttctgtttggagggccaataaaaacaaaacaaacacatgaaatcagttaaccattgtttgtgaatttctgttggctgcatgtttgtaatcccagagactgacactagaactttacaccatggtaacatatttttgttcttgtttgttttaatatgtttaagggttgtttttatcacttccttgtttcctggagagttctttaagtgtattcgtctttggtttcatcactcagtatttttgtgatttattgtttgaataagtaatcattctattggggaacagaaccctacaattttgtaagatttgaatatttggttataaataaatgtaaataacatctgagtgaacataggtgagtatttgaactgtgttaagtctttgcaattgttatgttactgtattgttccagagttgtcactttgatttcctttgtatgaatttttataataaaaaagttgttctgctccagaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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