2024-04-19 10:30:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_034484261 5186 bp mRNA linear ROD 16-MAY-2020 DEFINITION PREDICTED: Arvicanthis niloticus testis and ovary specific PAZ domain containing 1 (Topaz1), mRNA. ACCESSION XM_034484261 VERSION XM_034484261.1 DBLINK BioProject: PRJNA632612 KEYWORDS RefSeq. SOURCE Arvicanthis niloticus (Nile rat) ORGANISM Arvicanthis niloticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047678.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Arvicanthis niloticus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5186 /organism="Arvicanthis niloticus" /mol_type="mRNA" /isolate="mArvNil1" /specimen_voucher="T564M" /db_xref="taxon:61156" /chromosome="21" /sex="male" /tissue_type="Spleen (genome), brain & testis (transcriptome)" /dev_stage="adult" /country="USA: Santa Barbara" /lat_lon="34.41938 N 119.69905 W" /collection_date="06-Mar-2019" /collected_by="Huishi Toh" gene 1..5186 /gene="Topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:117693538" CDS 147..5114 /gene="Topaz1" /codon_start=1 /product="protein TOPAZ1" /protein_id="XP_034340152.1" /db_xref="GeneID:117693538" /translation="
MRPPRTPPGPTTAPGRKGSTRGLRKRGLPLTLTPEPGERGGCRLEARGREEESRQKRRMAQASGREGTEGDKLAKENGKLTEAPSDDPQPGTDLVRKASITSSESLQTVECSEFQNMAFLQSLAKEELVEGIKRRIQIKKCKSLENLPLKITKNEATQNIKVEFQDELFKNTPKYSCNSLSPGVEKNCSFESHDYSFLPSEGCNNENNFEDDPHGVRLHTAENSLKLKKENLRNLAEKDDTKTTTKLLKTEKSVIASKLLLEESHLYQNKNNGLTSCLQSEKNKYSVEENNTGRKHRKKMKLSEKEEKNTDLTLPNVCNNSELMLQENQMGMEGKETDTLESKKSFLKALRKVNHTTLPPVDYLCLPETVGKTSSRHHVSAVLQKTLESSLKEDIKNASESLGCKSVEPEEYFKLAISSAVKSPSDSHHMGKRSPRGDCRSETEESKASCRRIIPMTGKRVWPFYSCARISAQNWKKTSLSDLNYSLPGSLENVRQHDSLIDQMNQTHLSDSKLLQPSLIERTIESSSKDVYDSALSCLSSGSSIEPTLMDIKEAIPHDIKTKLEEPSRNGTEVISNATEATQLSNITQSLTGNKKKKGNLSKLNLTVASQESQEANNCANKTVHRKACITKQTLVAPDLVKILNTGRLTNFKIPLLKNKTGKRGEVSARSSEREAYSPLELLDSLSGVEAKQNRNKENICTTSGPQSLNIHSSVTSGQTSSLNSFYNRNSCTSPSFTKKGYDNKACNHISEPGNIISNKESISIKIENNTFSCDLGYIEQNSFCSKKQEAFVPISSEISGRKMTKSISELKLGFPDILKAYEDDVLLIDVIQDDPELFGISNEGDLSFASEVSKISQEPRVSEEHPSADFKHMHLPGKKEPGDLSKEVAVLDPGLLKLEICPSLSAAKEPQHGPKGAAISLDATEETVVSENIEDLCEQARASDSDAKRLSSDKATVMEEQESTHEVCKSKDSRNVEAVASECQLATLGPSPLCSSALPLNLSSHQDVVPTPWINDFRFPGRHSVLQLQNPESCEIFKREKNMGMFQKPLGLVIPHRYCKLHFNTLRGCERAQCKFFHVPEQGDEKICMDVFKKYISVNEQCLLHRAAYIFLEYYRKFPPGIHFSLQVLNDLLISLLKHCLLKEVFQVVQLSIMAKMLPALKILLKIFEYVAAMKLRNAVPALIEIFCKFIEAGMVPDPEHLNYIVKLLHQAQASQQEISAVLEAKARLRVRQLKKNWKCDLDSALSEVETCKEKGDWTKLGNLYISIKMGCEEFADFQRFCACVAETLTEDYKEERPGVPFCEFAETVSKDPQYSEVDKTLLGRIGISAVYFYHRLLLWAKGRKVLDTLYELKIHFTSLKGLTGPEKVAPRCQIVNVAAEIFIKSGSLDGAIWVLRESEWIINTPLWPCDRMDMLNRHHLLCTIAREILGKNLYKQTFEVLRNLPGFQNSQETTGISQSSLLFNELLDACIESNSLGISSSVAEFMVAKSIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLVPSHLSEIEMLLAIEIFLVSNASIIQSPGTPTQMLQIVLKRCEESKSRSKDDYQAAAERLIVAARISDPKLFIKHMTVNINKEQVYSLEHCSALKWLKENMKWAGKVWLFTNH"
misc_feature 3894..4421 /gene="Topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
acttccgcttcctgttgcgtcgggtacagggtccgaagccaggccaggccaggccagggtgggcagtagcctgtgtcctgcagcgggagcagcggccccgaggcggcgaggcttccccgagaggctgagtgggcggccgtgggcggatgcggcccccaaggacgcccccaggccccaccacggcgccagggcgcaaaggctccacccgaggcctgaggaagcgaggccttccgctgacgctgacgccagagccaggcgagcggggaggctgcagactagaggccagggggcgcgaggaggagagcaggcagaagaggaggatggcccaggcttctgggagagaagggacagaaggtgacaagttggccaaagagaatggaaaacttactgaagccccaagtgatgatccacagccagggactgacctggtaagaaaagcatcaataaccagttcggaatctttgcaaacagtggagtgcagtgaatttcaaaatatggctttcttacagtctttggctaaggaagaattggtagaaggtattaaaagaagaattcaaattaagaaatgtaaaagtttagaaaatctacctctcaaaataactaaaaatgaggcaacacaaaatattaaggttgaattccaagatgaactgttcaagaatacgccaaaatattcttgtaacagcttatcacctggagtagaaaaaaattgcagttttgaatcacatgattacagttttctcccttctgaaggttgtaataatgaaaacaactttgaggatgatcctcatggtgtacgtctccacacagcagagaactctttgaaattgaagaaagaaaaccttaggaatcttgcagagaaggatgacacaaaaactaccactaagctcttaaaaactgaaaaaagtgtaatagccagtaagttactgcttgaagaaagtcatttataccaaaataaaaacaatggcttgacttcctgccttcaaagtgaaaaaaacaaatattcagtagaggagaacaacactgggagaaaacacaggaaaaaaatgaagttgtctgaaaaagaagaaaaaaatactgatcttactttgcctaatgtgtgtaataattctgagttgatgttacaagaaaaccaaatgggtatggaagggaaagaaacagacaccttagaatctaaaaaaagttttctaaaagctttaagaaaagtaaaccatactacactccctccagtggactatttgtgtctcccagaaacagtggggaaaacaagttctagacatcacgtaagtgctgtgcttcagaaaacccttgaatcaagtttgaaagaggatataaaaaatgcttcagagtccttaggatgcaaaagtgtggagccagaagaatattttaaattggcgatcagctcggcagtgaaatcacctagtgatagccatcacatgggaaagagatctccacggggagattgtcgaagtgagactgaagagtcaaaggctagctgtcgcagaataataccaatgactggtaaaagagtttggcctttttattcttgtgctaggatatctgcccaaaattggaaaaagacttccctgtcagatttaaattactcacttccagggtctctggaaaatgttaggcaacatgattctctaatagaccaaatgaaccagactcacttatctgactccaaactgttacaaccatccctaatagaaagaaccattgagtcctcgagtaaagatgtgtatgattctgctttaagttgtttgtcttcaggttcttcaatagaacctactttgatggatataaaagaagctataccccatgatataaagacaaagttagaggaacccagcagaaatgggacagaggtaatttctaatgctactgaagccacccagttaagtaatataactcaaagcttaacaggaaataagaaaaagaaagggaatttatcaaaacttaatttaacagtggcatcccaagagagccaggaagcaaataactgtgcaaataaaactgttcatcgaaaagcttgtattactaagcaaacacttgtggctccggacttggttaaaatattaaacacaggacggctgactaattttaaaattcctttactgaagaacaagacaggaaaaagaggagaagtaagtgccaggtcatctgagagagaagcttatagtcccctagagctacttgacagtttatctggagtagaggcaaagcaaaatagaaataaggaaaatatctgtacaacttcaggaccacagtctttgaatatacatagtagtgtaacttcagggcaaactagttctctgaattcattctacaataggaattcttgtacttctccaagctttacaaagaaaggttatgataataaagcatgtaatcacatctctgaaccgggaaatattatttcaaataaggagtctatttctattaaaattgaaaataatactttttcttgtgatcttgggtatattgagcaaaattccttctgctctaagaaacaagaagcatttgtgccaatttcatctgaaattagtggtagaaaaatgactaaaagcatttcagaactcaaattggggtttccagatattcttaaagcatatgaagatgatgtcctcttgattgatgtgattcaagatgacccagagctctttggaatctccaatgaaggggatctctcctttgcttcagaagtctccaagataagccaggagccaagagtatccgaagaacacccgtcagcagactttaagcacatgcaccttccagggaaaaaagaaccaggtgatttgagtaaagaagttgccgtgctggaccctggattgctgaaactggagatctgtccttccttgtcagcagcaaaggagcctcagcatggtcccaaaggggcagccatctccttggacgccactgaggagactgttgtaagtgaaaacatagaagacctctgtgaacaagcacgagcttcagactcagacgcaaagcgcttaagttcagacaaggcaactgttatggaagaacaagagagcactcacgaagtttgcaaaagcaaagattctagaaatgtggaggctgtggctagtgagtgtcagttagcaacactgggccccagccctctgtgctcgtcagcactgcctttgaatctaagcagtcatcaagatgtagtgcccacgccctggataaacgatttcagatttccaggaagacattctgttctacaactgcagaatcctgaaagttgtgaaatatttaagagagaaaaaaatatggggatgttccagaaacccttagggttggtgataccccacagatactgcaaacttcattttaatacattgcgtggttgtgagcgagcacagtgcaagtttttccatgtgcctgagcagggagatgagaagatctgcatggatgtgtttaagaaatacataagtgtcaatgagcagtgtttgctgcatcgggcagcgtacatatttctggagtactacagaaagtttcctccagggatacacttcagtttacaagtgctgaatgaccttttgatttctttactcaagcattgtttactgaaagaagtcttccaggtagtgcagctcagcataatggctaaaatgctgcctgctctgaaaatattactaaagatatttgagtatgtggcagctatgaagttaaggaatgctgtacctgctttaattgagattttttgcaagttcattgaagctgggatggtacctgacccagagcacttgaactatatcgttaagcttttacaccaagcacaggcatcccaacaagaaatatctgcagttctggaagccaaagccaggttgcgagtgaggcagctgaagaagaactggaagtgtgacttagactcagccttgagtgaagtagagacttgtaaagaaaaaggtgactggaccaaattgggaaacctgtacattagcataaaaatgggttgtgaagaatttgcagatttccagagattctgcgcttgtgttgctgagacactcacagaagattataaagaagaaaggccaggtgttcctttttgtgaatttgctgaaacagttagcaaagatccacagtacagcgaggtggataagactttgttgggaaggatcggaataagtgctgtgtatttctatcacagactgttgctgtgggccaagggaaggaaggtcttagatacactatatgagctaaaaatacattttacaagtttaaaaggacttacaggacctgaaaaagtagcacccagatgtcaaattgtaaatgttgccgcggagatttttatcaagagcgggagcctggatggtgccatttgggtcctgagggaatcggaatggataatcaacacaccactttggccttgtgatagaatggacatgctcaatcggcatcatttgctctgtaccattgcacgtgaaatcctgggcaagaatctttacaaacaaacatttgaggtcttgaggaatctaccaggctttcagaattctcaagaaacaacggggatttcccagtctagccttctttttaatgaacttctggatgcctgtatagaaagtaacagtcttggcatatcatcttctgtagcagagttcatggttgcaaaaagcatccctattgacttctcctttctcaggagactgatcacttccctaggaaggagttgcttgtggctcaaagccagagcccactacaaaagtgctctttccctgggttgctacccaccattagagggaaacttataccggaaacttctactggttccttctcatttatctgagattgaaatgcttttagctatcgaaatatttctggtgtctaatgctagtattattcagagcccgggaactcccacacagatgctacagatcgttttaaaaagatgtgaagaaagcaaatctcgaagcaaggatgactatcaagctgcagcagaaagactgatcgtggctgctcgaatatcggaccccaagcttttcattaagcacatgactgtcaatatcaacaaagagcaggtgtacagtctggagcactgttctgccttgaaatggctgaaagagaatatgaagtgggctggaaaggtttggcttttcactaaccattagttagtaaagggttgttgttgggttttctttttaagttcaagtaatcattgttgaaaataaaagaataaaaat
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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