2024-11-01 08:13:44, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_033639127 1824 bp mRNA linear VRT 20-APR-2020 DEFINITION PREDICTED: Epinephelus lanceolatus cysteine-rich and transmembrane domain-containing protein 1-like (LOC117264835), mRNA. ACCESSION XM_033639127 VERSION XM_033639127.1 DBLINK BioProject: PRJNA625542 KEYWORDS RefSeq. SOURCE Epinephelus lanceolatus (giant grouper) ORGANISM Epinephelus lanceolatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046992.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Epinephelus lanceolatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1824 /organism="Epinephelus lanceolatus" /mol_type="mRNA" /isolate="Andai001" /db_xref="taxon:310571" /chromosome="2" /sex="female" /tissue_type="blood and muscle" gene 1..1824 /gene="LOC117264835" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:117264835" CDS 222..638 /gene="LOC117264835" /codon_start=1 /product="cysteine-rich and transmembrane domain-containing protein 1-like" /protein_id="XP_033495018.1" /db_xref="GeneID:117264835" /translation="
MSNDNPPPYVPPVPGGPSAPGFSSAYSSQPATFPGSPYQTFPQTYTGGGDLSYYQGPAGPQGPPVPPGPYLTQPGYQGYQSGPWEGPKMYGEQPKHTVFVVDQNYDDGGADGAESCLAGCSAALCCCCLWDMLTQNFC"
ORIGIN
tccatcggtcaacacgtcgatcaactggagcgacggcaacagagaaagttcatgttgtgacatttgacgcttcgtcctgagctgagagtccatccatccatccatccatccatccatccgtccatccatccatccatccatccatccatccatccgtccatccatccatccatccatccatccatccgtccatccgtccatccgtccgtccatctgtccccatgagtaatgataaccctcctccgtacgtccctcccgtccccggtggaccttcagctcccggcttctcttcagcttacagctctcagcctgcgacctttcctggctcaccataccagaccttccctcagacttacacaggtggaggagacctctcctactaccaaggaccggctggaccccaggggcccccggtgcccccggggccatacctgactcagcctgggtaccaggggtaccagagcggcccctgggagggccctaaaatgtacggagagcagccgaaacacacagtgttcgtggtcgatcaaaactatgacgacggcggcgctgacggagccgaatcgtgtctggcaggatgttcagctgctctgtgctgctgctgcctgtgggacatgttgacccaaaacttctgctgacctctgaccttcaccaccactgagcctcttctttcccatcatgcaccagggccaccataatgacaccaacctttgaccttttgaccttcattattttatcctgttagacatttgtgtcaagttcggtcagaattagtgaaagaatccttcagttatggccaaaaacacgtttgtgaggtcacagtgaccttggcttgtgtccaatctgacgtttgcgccaaattgaatagaaatcccatcaaagccgtcttgagtcacagggttcagaagaatgagacagacgtaaaggcacagtgacctttgaccttcaaattctaatcagctcattgttaagtccaagtgaaagtttgtgccatatttgaagaaattcccctgaggcattcttcagacatcgtgtcgacaaagatgagtcagacgaggtcacactgacctttttaccactaaagtctaatcagttcattgttcagtccaagtggacgttcatgccaaatttgaaaaaaaaacaaaaaaaaccttgaggtgttctcgagaggtcatgttagcgagaatgaaatggacgaggtcacggtgacctttaaagagataatcaccaaagtctaatcaggtcatcgtggagccccagtgaaagtttgtgccaaattaaaaaaaaaaatcccttaaggtttctgagatgtcgtgttcacatgttctcaagaatgagatggacaaagttacagtgacctttgaccttcaaaatctaatcagttcatcgttgactcaaagtggacgtttgtgccaaatttgaagaatttctcccgggatgttgttgacatatgatgttaaagagaacaggacagtgttcttacatagcggcggtggcggctcactgacattcatgataaatgttccagtgtttgagtcacagacgccgtcagtttcactaatgtgtttctctgttgtgtgtttttccccgacctcctgatgatgtcacacccctctgccaatgatgtgcctgcacatggcgggtcctgatctcagaccctgatgacatcataaaactatttttaatgaatcattgaatctgtttgaatttaggctaaaaacttgtttctaagtgtttacagtctcctcgtcttcacgtttcttgtgtgttaatgtttcttcacagttctgatgaagaggtcaataaaaagcttcgttaaaatga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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