LOCUS       XM_032581935            4968 bp    mRNA    linear   VRT 24-FEB-2020
DEFINITION  PREDICTED: Xiphophorus hellerii testis and ovary specific PAZ
            domain containing 1 (topaz1), transcript variant X1, mRNA.
ACCESSION   XM_032581935
VERSION     XM_032581935.1
DBLINK      BioProject: PRJNA604828
KEYWORDS    RefSeq.
SOURCE      Xiphophorus hellerii (green swordtail)
  ORGANISM  Xiphophorus hellerii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Poeciliidae; Poeciliinae; Xiphophorus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045684.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xiphophorus hellerii Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4968
                     /organism="Xiphophorus hellerii"
                     /mol_type="mRNA"
                     /strain="12219"
                     /db_xref="taxon:8084"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
     gene            1..4968
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116731987"
     CDS             179..4489
                     /gene="topaz1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X1"
                     /protein_id="XP_032437826.1"
                     /db_xref="GeneID:116731987"
                     /translation="

MVKVYGGKRAVETVDKIVVWINKYPKVTLCDIAATYDICSHNCGYILPDDLKNKKMRCFKRDMTAGFRIWPTCIGHNSEQGGEAKNSTSSVQSGNSICQAESLTEQHKHPEEGTASEVSETPSKHFYNGWTDVDTTTPASLLKSKHTEEDEIRTCVLDQYHLDDAGLGSDPIALEIHRDKRMKLGDGVECSRVCRTALKGPDQTIFSPTENDVFQISPVLFSENDEVNVDEPEFFTCQRVRPYFRELPISCARTCMSWPFPNSQPKCNVGASATACSETGSSQRSPIDSVTKNSNLSSSSTGEDHNMTNLRTAQQSVQSGKSVARLHCRSVPSSGPGRLSMEPDVGDGSTFLLNRLELNGSTLTTTTHSVLSLCDWEGSSALSNSSDPSSSGLSSTKFSPLPSTFLSRKIQNTAGKTFEEPQLSACGPVSFALPNNSYQSLLSSIGFSCDQNNNDECLPMKSPPSLEPYDASPFNPKHLCNFPRQNYVDFDSDGFLLPPELSPITSPYRCILGCTSFESLEILEDEEVMNKDETPTDFYLLQVANGNTETSSTSSEHSSKEMEGATSPSTPTDITAFKLLSSPSNTEVGGDEGIKKTLDDSEKKVEDVKRSFKQVSFGPKVQATVGSNVPTESSPSPSSHSEEHTEEDDEEEQCSSTEEESSSYNTEDDQREAEGTKERESDVLDEFTAYEQDILLVNLGQEDPELFENLPQKSLLNLGPVRDTAAPKKKPIPAIKFSSKTTKSSVFDQKVTPVTVDLHDICTDIAEEMESRPWRPRCSNITTKNQNPYHQSEHLGRSDRNNIKMDGSLESNFGRLIHPHVTSRLGRCMKNPANLTDFRRQKSNEYCRQYFSESLSCGFKMCRFQHLPAEGDEKFCVDTVTKFAKNPACLQKAGAVFTGYYQNSPPGAYFSMPVLLTLLWALLKAGMMSNVFSVLRVSLAHNIVPGHEFLLALFNYVRDKDLMNFVPELMQLTFKMASVGLELSLDCIDDVKHSPMFQQVAHHNSHVALGGNHNSPACMQSPEYLNLVHGIVEIELCAKQEDWKRMGEVYRSICQFSQHPNQVERISGRIAIALLSESKDKVSLPYAAFAKTVRQNESEENLVKTFVGRIGVSLMLRYHKNHHWVKGRIVVEVMSALKVDYTTLKSLFGNEDGASRCCLITVATELFYLSGSVEGALNTLREHNWFLSSGLWPCEPTDLEGRTNLLRRLSGKTSHRDTLEVLCNLPGVKEPSDLIDISRYSPMFTSHLQVCVERQILPVASDLLDFMLSKQLAVDHSLLQMLLEKLGRQNLWLRAREVFKHSLSAGYYPDVSAAPGLMALVVPCQLGEVELALALEMFVAFNASAILPLSDTASSSLSITLKRTQTCEGEYISAGNRLLSAACLPQPKLTVRYTAVNSSQEQLFRLDVPSARRWLRHNHLWASEMWTQRPKSVNPN"

     misc_feature    3278..3802
                     /gene="topaz1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      

tcgggatacacatctggacctatctgaacttgctggttcagaagggcacttaagaagatccgttggagcctccctctgtattgtgtgcggggaatgtaaatacatttccccccggcagaggaccttgagtaagcaaaagccaaaaaactctaccccggactccaggccgtcttccactatggttaaggtctacggcgggaaaagagccgttgagacggtggataagatcgtcgtgtggattaataagtaccccaaagtaacactttgcgacattgcagcaacatacgacatatgcagtcacaattgcggttacattttaccagatgatctcaagaacaagaagatgcgttgcttcaagcgggacatgacggctggatttagaatttggcccacttgtatagggcataacagtgagcaaggtggtgaggctaaaaatagcaccagcagtgtgcagagtggaaacagcatctgtcaggctgaaagtctgacagaacaacacaaacacccagaagaaggcacagcatcggaggtctcagagacgccttcaaagcatttctacaatggctggacggatgtagacaccactactcctgcttctctcttaaaaagcaaacacacagaagaagacgagatcaggacttgtgtgttggaccaatatcatctggacgatgctggacttggatctgacccgattgctttggagattcacagagacaaaagaatgaagcttggggacggagttgagtgcagcagagtttgtcgcacggccttgaaaggacctgatcagactattttcagtccgactgaaaatgatgtatttcaaatatcaccagtgctgttcagtgagaatgatgaggtgaacgtggacgaaccggagtttttcacttgccagagagtaaggccgtattttagggaactacctatttcgtgtgcgcgaacttgcatgtcctggccttttccaaatagtcagccgaaatgtaatgttggtgcttctgccacagcctgttcagagacgggttcatcacaaaggagccccattgactctgtgacaaagaattcaaacctgtctagttcatccacaggagaagaccacaacatgacaaacctgaggacagcgcaacaatctgtgcagtctggaaaatctgtagctcgtcttcattgtcgttccgttccatcttcaggcccaggtcggcttagtatggagccggatgttggagatggatcaacttttctgttgaaccgccttgaattgaacggctccaccttgactactaccacccactcggtgctcagcctgtgtgactgggaaggatcctctgctttgtctaattcatcagatccatcatcaagcggcctttcttccacaaagttttctccgctcccttcaacgttcctatcaaggaaaatccaaaacactgcggggaaaacgtttgaggaaccccaactctccgcatgcggtcctgtatcctttgcacttccaaacaactcctaccagagccttctatcctccatcggcttcagttgtgaccagaacaacaacgatgaatgtctcccaatgaagagtccacccagtctggaaccatatgacgcaagtccgttcaacccaaaacatttgtgcaacttccccagacaaaactatgtggactttgactctgatgggtttctgcttccaccagagctctcccccatcacctctccatataggtgcattttagggtgtacctcattcgaaagcctggaaatattggaagatgaggaggttatgaacaaagatgaaacaccaacagatttttacctgctgcaagtggctaatggcaacactgagacctccagtacttcttctgaacactccagcaaagaaatggaaggcgctacaagtcccagtactccgactgacatcaccgctttcaaattgttgtcttctcccagcaacactgaagtgggtggtgatgagggtataaagaaaactttagatgactcagagaaaaaagttgaggacgttaaaagaagtttcaagcaagtttcctttggtcctaaagtacaggcaaccgttggctcgaatgtcccgaccgaaagcagcccgtctcccagcagccatagtgaggaacacacagaagaagacgacgaagaagagcagtgctcttctacagaagaggagtcgagctcttacaacacggaagacgaccaaagagaagcggaggggaccaaagaacgggagtctgacgttttggacgagttcacagcttacgaacaggatatcttgctcgtcaaccttgggcaggaggatccggaactgtttgaaaatctgccacagaagagcctgctaaacctgggccccgtcagggacaccgcggctcctaaaaagaaaccaatcccggcaataaagttttcatccaagacaaccaagtcatcagtgtttgatcaaaaagtgacaccagttacagtcgatcttcatgacatctgtactgatattgcagaggagatggaaagcagaccatggagacctcggtgtagcaacataactaccaaaaatcaaaatccataccatcaaagcgaacatctgggacgatctgatagaaacaacattaaaatggatggatccctggaaagtaattttggtcgtctcatccatccacacgtgacctcaagattaggacggtgtatgaaaaacccggctaacctgacagattttaggcgtcagaaatcaaatgaatactgcagacagtacttcagtgagtcgctgtcctgtggcttcaaaatgtgtcgcttccagcatctaccggcggagggggacgagaagttctgtgttgatacggtgacgaagttcgccaaaaatccagcgtgcctccagaaagctggcgctgtgtttactgggtactaccagaacagtccaccgggggcgtatttctccatgccggtcctcctcaccctgctctgggctctgctgaaagccggcatgatgtccaacgtcttctcagtcctccgcgtcagcttggcccacaacatagtgccgggccacgagttcctgctggctctctttaactacgtgagggacaaggatctcatgaacttcgtgcctgaactgatgcagctcacattcaagatggccagcgtcggtttggagctgagcttggactgcatagacgacgtaaaacacagccccatgtttcagcaggtggctcatcacaactcgcacgtcgctctgggtggaaaccacaactcacctgcctgcatgcagagtcctgagtatctcaatttagtgcatgggattgttgaaatagagctttgtgccaagcaggaagactggaaacggatgggagaggtgtacaggtccatctgccagttcagccaacacccaaaccaggtggagcgaatcagcggccgcattgctatagcgcttctgtctgagagcaaagacaaggtctcactgccttacgctgctttcgctaagacagtgcgccaaaatgaaagtgaggagaatctggtgaagacttttgtgggcagaatcggagtgtctttgatgttgagataccacaaaaatcaccactgggttaagggccgcatagtggtggaggtgatgtccgccttaaaagtcgactacacaacactgaagagcttatttgggaacgaggacggagcgtcgcgctgctgcctgatcactgtggcaacggagctcttctacctgagtgggagtgtggagggagcgctaaacacactccgagaacacaactggttcctgagttcgggtttgtggccgtgcgagcccactgatctggagggcaggactaatctgctgaggcgtctgtctgggaaaacctctcaccgggacaccttggaggtcctctgtaatctgccaggagttaaggaacccagcgaccttatagacatctccaggtacagtcctatgtttacgtctcaccttcaagtgtgtgtggagagacagattctacctgtagcgtcagacctgctggacttcatgctgagtaaacagctggctgtcgatcactcactgctgcagatgctactcgagaaactgggcaggcaaaacctgtggctgcgggcgcgggaagtcttcaaacattctctgagtgcgggctactaccctgacgtatcggctgcccctggtttgatggcgctggtcgtaccctgtcagctcggcgaggtggagctcgctctcgccttggagatgtttgttgccttcaatgcgtcagccattcttcctctttcagacaccgcctcttcttccctcagcatcactctaaaaaggactcaaacctgcgagggggagtacatctcggcaggtaaccggcttctctccgcagcttgcctgccccagcccaaactcactgtccgctacacagcggtcaactcctcccaggagcagctgttccggctggacgttccctccgcgcgccgctggctccgccacaatcacttgtgggccagcgagatgtggacgcaacgacccaaaagtgtcaaccccaactgacctcggtaactattttgacgtcttcttatgttccagcgtccgtgaatgctccgagaaacatcaatgaaatcaggtagaacggcgtgtttctgttctagttctacatttcttttcttccttacacacatggcgacccagtcgcaggaaatcacaaccaaagactgatgccaggtgatcaaactttttatgttcatgtttatttaaagctctttattttcctgaggtagttttgttggctttcactcagagttttaagggagcaacttagaattctttttcttgcggggaacaatcacatgtaatttttggggggtggagtgggtgttacagtgttatctgtatataaaataattaaatatgtatttatatgaccacattatgttgccgtattgtttgttataatcaaaactgttgcttgttcaggacctgtaatttacgatttctttgaattaagttttttattaaaagtttacttcttt

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