2024-04-20 19:50:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032535953 5890 bp mRNA linear VRT 21-FEB-2020 DEFINITION PREDICTED: Etheostoma spectabile testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X3, mRNA. ACCESSION XM_032535953 VERSION XM_032535953.1 DBLINK BioProject: PRJNA606051 KEYWORDS RefSeq. SOURCE Etheostoma spectabile (orangethroat darter) ORGANISM Etheostoma spectabile Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045746.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Etheostoma spectabile Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5890 /organism="Etheostoma spectabile" /mol_type="mRNA" /isolate="EspeVRDwgs_2016" /db_xref="taxon:54343" /chromosome="14" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: Vermillion River drainage, Champaign County, IL" gene 1..5890 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:116701910" CDS 200..5290 /gene="topaz1" /codon_start=1 /product="protein TOPAZ1 isoform X3" /protein_id="XP_032391844.1" /db_xref="GeneID:116701910" /translation="
MLPSSNRIKLNRVALKNLVGQTVPRRRRLPKSLNNVTTDSKIQEENQQVCEPVTIKDTTSVPSSNEPAQTSKTEQLGPENVTDTTGNVADGESEENCVDIDRNMHPSPTGIPGSEGSLRRAVRASSCGDSKYIYSQQKTFGEQRQESSSPGPEQSTVDFKIKKANAFTATSKKIIIWIDKYPKVMLCDIAQKFDAFSHDCGFVLPDVLKTKVVHCFKKDMKACPRIQSEKSVCLSQSLTEYQRHLKKGTAVQMLSSHTTCHSLNSWTSEASATPSGSFLLGGHRQKGECRTGMLDRDFEEDPGPGFCLMGSDIHRDKRIKLGDSVKDGILPSTPKLESICHKVPGRTDPRHKEKTCTWMSDDSQSCLEHEVGGSSSFDSAVKENGVHKTPRCELDNPTKTDAAQMSSELFCQSNEVDTVDPESFTCQRVRAYLRKIKFSCARTYMSWPFSNSGQTLTVHTGTTVCPANSNSSLEQSQPCSSNNRTSDLLPDALTDTSLGTAHQVSHQNGEMRAEDGESILAGRNGKTHGNMSSYSLEFAPHVMGEKESLAGLTSDTATLSNPSQHEGESDTDTASSSPVNEPESDSSMSTPSPSTLGLVDWETATTLSPVSSPFTHGFSSPTATPSPLPPSSFLLKKVEGVELAEAHSASASPKCIVRTVEPALFYCEETQMTSWTPPNTSDAFESCDSSLLLPQDEQESDEGILTGRSPPVLEPYYNTSPFNRVLLKERSSHNIRTEKCVETSSNEFMLPPLLSPVTSPQRRPRKSLLPQSSDCSDEEKEIKNARKHKILPRCHMLHIMNSNNENSYNTNYLKHGREEMERVSTNFNTILRDPQSSPSSVEDGDDGDIEEESQAGTGREYDVEQGSKKSEQVPSDPKIKETPTSGALKKPSSSPSSDDDDGGGFSDGQACSSREEGSSPSEIEGSESDETAAKEAAGDTQCGVLDEFTAYEQDILLVDVIQDDPELFENVPQERLLKLGPVRVTVAPKTRPIGVVKTLSPKRGEAFLQLEQSLTPVYCKSHDITDESDSRPWRPQCSSTSSETQSNTWPATDKKTKGQPDANNNHVNGVLERSLPIQNVNSFRNHIPPLMTTRDAPRIPNPLNTTPFKRQKSNPQYCRQYFSESLSCGFKMCRFHHVPVEGDEKLCIETVIRFTKNLTCLQKAGAVFTGYYRNNPPGAYFSKPVLLTLLWALLKAGMVSDVFSVLSVSLDHKIVPGHEFLLALFNIVREKGLIGVVPELMQLTFKMAGAGLVLSLDCLDCVKNTPEFQKTVNPNSLTSGNKLSTSARFPEYLNLAHSIVEIELCTKQEDWRRMGVVFRSICQSSKHPNQVGKISGRIAIALLSESKDKLSLPFGTFAETVCQNEAEDSLILSFLGRIGVSLMLRYHKTHQWAKGRRVVEVLSISKVNYSTLKGLFGNEDGATRCYLVTVATELFLLSGSLEGALNTLRENKWFLSSSSWPCEPADLESRSRVLMRLAEKTSHRDTLEVLCNLPGLQEPNDSVDISRYGPLFNSHLQVCVDRQILPVASDTVDFMLSKNLAVDRALLQMLLQKLGKQNLWLRAREVFRHSLSMGYYPGVSAPPGFMALIVPCRLGEVELALAFEMFITVNATGIFHYSDTTTSPLSITLKRTQSCESEYLSASSRILSAACIPQPKLTVHYTAVNSSQDQVFALDISSARCWLRHNHLWANEVWTH"
misc_feature 4103..4621 /gene="topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
tcgttcccatgtcaatttgtagttaacaaatcagagcagcagggaaagatgaacggtagggtcgctcgagactagttttgacgtcgttacgcaggtttaatcactgcgcgtttgccttttactcgaaagcactttttattaagcgagtgttatttttatttttttttagctttcgatagtcattgttttaaatgacagcatgttaccatcttctaacagaataaaacttaaccgagtggcgttaaaaaaccttgttggtcaaacagtgccgcgacggagacgactcccaaagtcgttgaataatgttacaactgactccaaaatacaagaggaaaaccaacaagtttgtgaaccagtcacgataaaagacacgacctccgtccctagcagcaatgaacctgcccaaacctctaaaacagaacaactgggccctgaaaatgtaaccgatacgaccggtaacgtcgctgacggagagtcggaggagaattgcgtagacattgatagaaatatgcacccaagccccacaggaattcctggttcagaaggatctttgagaagagctgtaagagcctccagctgtggtgacagtaaatacatttactctcaacagaagacatttggtgagcaaagacaagaaagcagtagcccagggccagagcagtctacggttgattttaagatcaagaaagcaaatgcattcactgcgacctctaagaagattatcatatggatagacaagtatccaaaagtgatgctttgcgacatagctcaaaaatttgatgcttttagtcatgattgtggctttgtgttaccggatgttctcaaaaccaaggttgtgcattgcttcaaaaaggacatgaaagcttgtcccagaattcagtctgagaagagcgtctgtctgtctcagagtctgactgaataccaaagacacctgaaaaaaggcacagctgtgcagatgttatccagtcataccacttgtcattccctcaacagttggacaagtgaagcctctgcaactccttctggttcttttttactaggtggacatagacaaaagggggagtgcaggactggcatgttggacagagattttgaggaggatcctgggccgggattttgcctaatgggatctgatattcacagagacaaaagaataaagcttggggatagtgttaaagatgggattttaccatccactccaaagctagaaagcatctgtcacaaagtcccaggaaggacagaccctaggcacaaagagaaaacatgcacttggatgtctgatgacagtcagtcatgtttagagcatgaggttgggggcagcagctcttttgactcagctgtgaaagaaaacggtgtccacaagacacctcgttgtgagcttgacaatcccacaaaaaccgatgcagcgcaaatgtcatcagaactgttctgtcagagtaacgaggtggacacggttgacccagagtcattcacctgccaaagagtaagggcctatctcagaaaaataaaattttcttgtgcacgcacatacatgtcttggcccttctctaacagtggccagacccttacagtgcatactggcaccacagtctgtccagccaacagcaactcctcattagagcaaagtcagccatgttcatctaacaaccgaaccagtgacttgctcccagatgcacttacggacacctctttaggcacagcccaccaggtttctcatcaaaacggagagatgcgagcagaggatggagagagcattttagcagggagaaatggaaaaacacatggtaatatgtcttcatactctttggagtttgcaccccacgtaatgggggaaaaagaatcattagcaggtcttacctcagatactgctactctttccaacccaagtcagcatgaaggagagtctgacacagacacagcctcatcttcaccggttaatgaacctgaaagtgacagctccatgtctaccccttccccctcaacacttggcctggttgactgggaaactgccactactttgtctcccgtgtcatctccatttacacatggttttagcagcccgacggccacaccatcccctctcccaccttcatcgttcctactgaagaaagtcgaaggtgttgagttggctgaagctcattctgcaagcgcgtcacccaaatgtatagtcagaactgtagaaccagcattgttctactgtgaagaaacccaaatgacttcatggactcctccaaacacctctgacgccttcgaatcatgcgattcctccctcctgctccctcaagatgagcaagaaagtgacgaagggattctcacaggcaggagtccaccagtactggagccatattataatacaagcccctttaaccgtgttcttttaaaggagagatcatcgcataacatccgcacagaaaagtgtgtagaaacaagctcaaatgagtttatgcttccaccactgctctctcctgtcacttcaccacaaaggcgccctagaaaaagcctcctgccccaaagctcagactgttcagatgaagagaaggaaatcaaaaacgccagaaaacacaaaatattacctagatgtcacatgctacacattatgaatagcaataatgaaaactcgtataacacaaattatcttaaacatggtagggaagagatggaaagagtctcaacaaatttcaatactattttaagggatcctcagtcttctccaagcagtgtcgaagatggggatgatggtgatattgaagaggaaagccaggctggaactggtagggaatatgatgtggagcagggtagcaaaaaatcagaacaagttccatccgacccgaaaataaaggaaactcctacctcgggtgctctgaaaaaacccagctcttctcccagcagtgatgacgatgatgggggcggcttcagcgatggacaggcctgttcttctagagaagagggatctagtccatctgaaatagaaggtagtgaaagtgatgaaacggccgctaaagaggcagctggtgatactcagtgcggcgttttggatgagttcacagcttacgaacaggacatcctgcttgttgatgtgatccaggacgacccagagctgtttgaaaacgtgccccaggaaagattgctgaaactaggtcccgtcagagttactgtggcccctaaaaccagacctattggagtggtgaaaacactgtcacccaagagaggtgaagcatttctacagttggaacaaagcttgaccccagtttactgcaagagtcatgatatcacagatgagagcgacagccgaccatggagaccccagtgtagcagcacctcctccgaaacgcaaagcaacacatggcccgcaacagacaagaaaaccaaaggtcagcctgatgccaacaacaatcatgtcaacggagtactggagaggagcctgcccatccagaatgtaaactccttccgtaatcacatccctcctcttatgaccacaagagatgcgccaaggatcccaaacccattaaacacgacaccattcaagagacaaaaatctaatcctcaatactgcaggcagtacttcagcgagtcgctgtcctgcgggttcaagatgtgtcgcttccatcatgtgcctgtggagggggacgagaagttgtgcattgaaacggtgatacggttcaccaaaaatctaacgtgtcttcaaaaagcaggagctgtttttacaggctactaccggaacaacccacccggagcgtacttctccaagccggtgcttctgacactcctctgggctctgctcaaagctggcatggtgtctgatgtcttctcagtcctcagtgtcagcttggatcacaagattgtgcctggccatgagttcttgttggccctctttaacattgtgagagaaaagggtctcatcggtgttgtacctgaactcatgcagctcacattcaagatggctggtgccggcctagtgctgagtttggactgtctcgactgtgtgaaaaacactcctgagttccagaagacggtcaatccaaactcactcacgtctggtaacaagttatctaccagtgcacgctttccagagtacttgaacttggcccattccattgtggaaatagagctgtgtaccaagcaggaggactggaggcggatgggggtggttttcaggtccatctgccaatccagcaaacatcccaaccaagtggggaaaatcagcggtcgcattgctatagcgctcctgtctgagagcaaagacaagttgtccctgccctttggtacctttgctgagacagtgtgtcagaatgaagctgaggacagcctgatcttgagctttttaggcagaattggagtctctctgatgttaagataccacaaaacgcatcaatgggctaagggtcgcagggtggtggaggtgctgtccatttccaaagtcaactactcaacactgaagggtttgtttgggaatgaggatggagcaacgcgctgctacctggtcaccgtggctactgagctctttctcctgagtggcagcttggagggagctctaaacacactccgagaaaacaaatggttcctgagttcgagctcgtggccgtgtgagcctgctgatctggagagtaggagtcgtgtgttgatgcgtctggctgagaaaacgtctcacagagacacgctggaggtcctctgtaacctccctgggctccaggagccaaacgactcggtcgatatctccaggtacggtcctctgtttaactctcacctacaagtgtgtgtggaccgacagatacttcctgtggcttccgacactgtggacttcatgctctctaaaaacctggcagttgaccgtgctttgctgcagatgcttctgcaaaaactaggcaagcaaaacctctggctccgtgcccgggaagtcttcagacactctctgagtatggggtactacccaggtgtgtcggctcctcctggtttcatggccctgatcgtcccctgtcgactaggcgaggtggagctggctctcgcctttgagatgttcatcaccgtcaatgcaacgggcattttccactactcagacaccaccacttcccctctcagcatcactctcaaaaggactcaaagctgcgagagcgagtacctctccgctagtagccgcatcctctctgcagcctgcatccctcagcccaaactaactgttcactacaccgcggttaactcgtcgcaggatcaggtgttcgccctcgacatttcctctgctcgatgctggctccgccacaatcatttgtgggccaatgaggtgtggacgcactgaaccaaacggttgttcccctgcagtacctgaaagtactatgtatgtctaagtacatatgttgcagagacatcagttgactcaaccaatgaaatcaggaaaacaagcacatgaacgttcctgttggctgtaacactaatggttataactttaatttagcctttgacaaagaagcagaaaatcacagacaccagaactttacaatgtttttttttgtttgttttttaaacaaaacataacttatttttgttcaaatatgtttacggatttattttttaattgtttcctgaagagttcttcaagctagtttgtctttgctttatgtcactcagtgtttgtgtgatttactattggaacagagtccagcatcattttgtaggattgttattgttgttacaagtattagatttagtttacaatgtaaataacatctgagtgtatatagataaatatttataatgttaatgtctttgacagtattatgtttctgtattatcttattgattgtcaaaacctctagtgttgcttgttcaagagctgtgatttacattttctttgtatgatgttttatatataaaaaaacaacaacaacattgttctgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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