2024-04-20 18:22:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032459069 5459 bp mRNA linear MAM 19-FEB-2020 DEFINITION PREDICTED: Camelus ferus testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_032459069 VERSION XM_032459069.1 DBLINK BioProject: PRJNA605179 KEYWORDS RefSeq. SOURCE Camelus ferus (Wild Bactrian camel) ORGANISM Camelus ferus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045712.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Camelus ferus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5459 /organism="Camelus ferus" /mol_type="mRNA" /isolate="YT-003-E" /db_xref="taxon:419612" /chromosome="17" /sex="male" /tissue_type="ear skin" /country="Mongolia" gene 1..5459 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:102504155" CDS 29..5140 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1" /protein_id="XP_032314960.1" /db_xref="GeneID:102504155" /translation="
MRRPPPSGRTTALGRGGDTRGSRKRGRRPGPGEAGGGGPEAGAREESKQKRRMVARASGREEVNSDQSGEASRAGKASARRRVEGPGGQAGPSDQSDQQGLEAAKEAELPLQSGRQTKEKRKVTEASSDALQPGIDLVRKESLTSSESFQTVECNECQSMAFLQPLGKEGLVEGMKRRIRIKKLKSLESPPLEITENKTPQNITVEFQDELYKNTPKYSCNSLSPGVENNPILKLPNCSCFPHSKGCNDENNLAPKPDGRCIHVSENTSKLKKESPRSLAAKSDTTIPQLLQTEENLMGDNKLLLEENDLYQSKNNGSLSCLLSEKNKNSVEESNVGRKRRKRMKVSEKGDEMVIEMKSSNVYNKSELMLPESQTGAEGKEAETLEAKKSPLKVMRKVNHDSLSATDHLLSLPGLEGKKPSPEHHVNAMFQKTLEPLLKEETKNASESLGCKGMDPEECSKSMKSSIMESPSDRYPIERRSSREDLKNEGEESKLSCRRTIPMTGKRTWPCYSCARTSAWCWKKASLPQSNFNFLPESQESFRQDDFLKHQTNQTHLTDLKLMLQSSITETNSESSSREKLDSDLNCLSSVSTVEPTLMVMKEPIINDDKKMKSEEPSRSGSEVVSNPTEDTQLTNVTQNLTGSEKKDRGNLTKPTLTVASQDGQEANNSRGKPIHRKACIAKQTLVVPDFVKILNTGRLTNFKIPLLKNKTEKRKINAKSSEREVYSPLELLDNLSGAEVRQNRTKETSRPQALSIRSSVIPMQSCSNSYGSKDSCISPSFLTQVSNNKPSNHIFKPGNIVSNKEAISLPVENNTSSCGPGYIEKSPAFGSNEQETFKPVSSEVSGRKMTKNFSEIKVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPTISQEPKVAEEHQSADSKHVELPGKKEPSNDVREPPVLDPGLMKSEICASLSAANELKHDSKDADIPLEEVTNETSEDEKLGDFSEHTKSSDLDEKCRFSDKVTIQDEKENTYEICKSGDSKNTEIMVGECHLAALGPKPLYFPVPVPPLTVSAHQEDTLLKPWMNDFRFPGKHSLLKLQNPEICEVFNREKNIGVKALGLMIPQRYCKFHFNTLRGCERLQCKFAHVPEQGDEKVCMDVFKKYISIDELCLLQRAVNMFMEYYRKFPPGIHFDLQVLNDLLNSLLKHCLLKEIFQVVNLSIMVKMLPALKILLKIFEHVATMKLRNAVPALIDMFYKLVEAGMVLDPEDFNCIVKCLYQVQASKQEITIVLEMKSRLRMRQFKKNWKYDLESALNEIECCKEKGDWTKLGNLYLNIKIGCEKFADLQRFCTCIAETLTKDCEEERPGVPFCEFAEIVSKDPQNNEADKTLLGRVGISAMYFYHKLLQWSKGRKVLDKLYELKIHFTSLKGLIGPEKLAPRCQIVNIAAEIFLKSGTLDGAIWVLRESEWIINTPLWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSEETVEVSQYSLLFNKLLDACIESNSLGLSSSVAEFMISKSVPVDFSFLRRLITSLGRSSLWLKARTHYKSALSLGCYPPLEGNLYRKVLLIPSYLSEIEMLLAVEIFLVSNASSIQSPGTSTQMLQIVLKRCEENKSRSQDDYQAAVERLIMAARISDPKLFIKHMTVNVNKEQVYSLEQCSALKWLKENMKWAGKVWLFNNH"
misc_feature 3920..4447 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
tctgcgagcagacctgctgcccgggcagatgcggcggccgccgccctcgggccgcacgacggccctgggacgtggaggcgacacgcgaggctcgaggaagcgaggccggcgtccagggccaggcgaagcgggaggcggcggccctgaggccggggcgcgtgaggagagcaagcaaaagaggaggatggtggcccgggcgtctgggagagaagaggtgaacagtgaccagtcgggtgaggcgtccagggctgggaaggcctcggcaaggcggcgagtggaggggccgggcggccaagcgggcccttcagaccagtcggaccagcagggcctagaagcagcgaaggaggcggagctcccgttgcaatccggaagacagaccaaggaaaaaagaaaagttactgaagcctcaagtgatgctctacagccagggattgacctggtaagaaaggaatcattaaccagttcggaatctttccaaacagtggaatgcaatgaatgtcaaagtatggctttcttgcagcctttgggtaaggaaggtttggtagaaggtatgaaaagaagaattcgaattaaaaaacttaaaagcttagaaagcccacctctcgaaataactgaaaataagactccacaaaatattacggttgaatttcaagatgaactgtacaagaatactccgaaatattcttgtaacagcttgtcacctggagtagaaaataatcccattttaaaattacctaattgcagttgtttcccccattccaagggttgtaatgatgaaaataaccttgcacctaaacctgatggtagatgtatacatgtatcagaaaatacctcaaagttaaagaaagaaagtcctaggagtcttgcagctaagagtgacacgactattcctcagcttttacaaactgaagaaaacttaatgggagataataagttattgctagaagaaaatgatttataccaaagtaaaaataatggctcgctttcctgcctcctaagtgaaaaaaataaaaactcagtagaggagagcaatgttgggagaaaacgcagaaaaaggatgaaggtatctgaaaaaggagatgaaatggttattgagatgaagtcctctaatgtgtataacaagtctgagctgatgttaccagaaagccaaacaggtgctgaaggtaaagaagcagagactttagaggctaaaaaaagtcctttaaaagttatgagaaaagtaaaccatgattcactgtcagcaacggatcatttgttaagtcttccaggattagaaggaaaaaaaccaagtcctgaacatcacgtaaatgctatgttccagaaaacccttgagccacttttgaaagaagaaacgaagaatgcttcagagtccttaggatgtaaaggcatggatccagaagagtgttctaagtcgatgaaaagctcaataatggaatcacctagcgatcgctaccctattgaaagaagatcctcgagggaagacttgaagaatgaaggtgaagaatctaagttaagctgtcgcagaacaataccaatgactggcaaaagaacttggccttgttattcctgtgctagaacatctgcctggtgttggaaaaaggcttccttgccacagtcaaattttaactttcttcctgagtctcaggaaagttttaggcaagatgattttcttaagcaccaaacaaatcaaactcacttgactgacttaaagttaatgctacaaagttccataacagaaacaaacagtgagtcttcaagtagagaaaaattggattctgatttaaattgtttatcttcagtctctacagtagaacctactttaatggttatgaaggaacctataatcaatgatgataaaaaaatgaagtcagaggaaccaagcagaagtgggtcagaagtagtttctaatcctactgaagatactcagttaaccaacgtgactcaaaacttgacaggaagtgaaaaaaaagatagagggaatttaacaaagcctactttgacagtggcttcccaggacggccaggaagcaaataactccagaggcaaacctattcatcgaaaagcatgtattgctaagcaaacacttgtggttccagacttcgtgaagatattgaacacagggcggctgactaattttaaaattcctttgcttaagaataaaacagaaaaaagaaaaataaatgccaagtcatcggagagagaagtatatagtcccctagaacttcttgacaatttgtctggagcagaggtaaggcagaataggactaaagaaacttcaagacctcaggctttgagcatacgaagtagtgtaatcccaatgcaaagctgttccaactcatacggcagtaaggattcctgtatttctccaagctttttaacgcaagttagtaataataaaccatctaaccacatctttaaaccaggcaatattgtttctaataaggaagctatttctctcccagttgagaataatacttcttcttgtggtcctggatatatagagaaaagtcctgccttcggctccaatgaacaagaaacattcaaaccagtttcctctgaagttagtggtagaaaaatgactaagaacttctcagaaattaaagttgggtttccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccggacctctttggagtctccaatgaaggggagctctcatttacttcagaggttcccacgataagccaggagcccaaggttgctgaagagcaccagtcagcagactccaagcacgtggagcttccaggaaaaaaagaaccaagcaatgacgtgagagaacctcctgtcctggatcctgggttgatgaagtcagagatctgtgcttccttgtcagcagcaaatgagctaaaacatgattccaaagatgcagacattcccttagaagaagttactaatgagacctctgaagatgaaaaactgggggacttcagtgaacacacaaaaagctcagatttggatgaaaagtgtagattttcagacaaggtgacgattcaagacgaaaaagaaaatacttatgaaatttgcaaaagtggtgattctaaaaatactgagattatggttggtgaatgtcatttagcagcactgggccccaaacctctgtactttccagtgccagtgccgcctttgactgtaagtgctcatcaagaagacacactgctgaagccctggatgaatgatttcagatttccaggaaaacattctctcctaaagctgcagaaccctgaaatttgtgaagtatttaacagggaaaaaaatataggggtaaaagccctagggttgatgataccccagagatactgcaagtttcattttaatacattacgtggctgtgagcgattacaatgcaagtttgctcacgtgcctgagcaaggggatgaaaaggtttgcatggatgtgtttaagaaatatataagtatcgacgagctgtgtttgctacaacgtgcagtaaacatgtttatggagtactacagaaagtttcctccgggcatacactttgacttacaagtgctaaatgatcttctaaattctttactcaaacattgtttattgaaagaaatatttcaggtagtgaacctcagcataatggttaaaatgctgcctgctctgaaaatattactaaaaatatttgagcatgtggcaactatgaaattaaggaatgctgtacctgctttaattgatatgttttacaagcttgttgaagctgggatggtgcttgacccagaagactttaactgtatcgttaagtgtttataccaagtacaggcttccaagcaagaaataactatagttctggaaatgaaatccaggttacggatgaggcaatttaaaaagaactggaagtatgatttagagtcagccttgaatgaaatagagtgttgtaaagaaaaaggtgactggaccaaattgggaaatttatacttaaacataaaaataggctgtgaaaaatttgcagatttgcagagattttgcacttgtattgctgaaacactaacaaaagactgtgaagaagagagaccaggtgttccattttgtgaatttgctgaaatagttagcaaagatccacaaaacaatgaagcagataaaactttgctgggaagagtcggaatcagtgctatgtacttctatcacaagctgttgcagtggtccaagggacggaaggtcttagacaaactgtatgagttaaagatacattttacaagtttaaaaggacttatagggcctgagaagttagcaccaagatgtcaaattgtgaatattgcagcagaaatttttctaaaaagtggaaccctagatggtgccatttgggtcttaagggagtcagagtggatcatcaatacaccgctgtggccttgcgatagactggatgtgctcaatcggcataatctgctctgtacaattgcacatgaaatcttagcaaagagcctttacagacagacatttgaagttttacaaaatctaccaggttttcaaaattctgaagaaactgtggaggtctcacagtatagtcttctttttaataaacttctggatgcctgtatagaaagcaacagccttggcttgtcatcctccgtagcagagttcatgatttcaaagagcgtccctgttgatttttcctttcttagaagattgattacttctttaggaaggagtagtttatggctcaaagccagaacccactacaaaagtgctctttcattgggttgttacccaccgttggagggaaatttataccgaaaagttctactgattccttcctatttgtctgagatcgaaatgcttttagctgttgaaatcttcctggtatctaacgctagtagtattcagagtcctggaacttctacacagatgctgcagatagttttaaaaagatgtgaagaaaacaaatctcggagccaggatgattatcaagctgcagtggaaagattaatcatggctgctcgtatatccgatccaaagcttttcattaagcacatgactgtcaacgttaataaggaacaggtttatagtttggaacaatgttctgccctgaagtggctgaaagagaatatgaagtgggctggaaaggtttggcttttcaataaccattagttattaaaggcttttttttttaagttcaagtaatcattgttgaaaataaaagacactaaaaataaagacagttttcaccgtattcagcttgtgctctttattgatttatagtaagttaattttcaaacactaaagattttgattgatgtatgcaatttataacagttttatccatactgaaaataatttttcgaattactttttgacttctctttaatttaggtaaacctaagtgtcatgaatcctaatttattctgaaatccaaacaatggaaaatcacaaactaagtattgtgcagcatttaatagagggagacata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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