2024-04-27 05:58:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032235238 6095 bp mRNA linear VRT 31-JAN-2020 DEFINITION PREDICTED: Thamnophis elegans testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X4, mRNA. ACCESSION XM_032235238 VERSION XM_032235238.1 DBLINK BioProject: PRJNA602516 KEYWORDS RefSeq. SOURCE Thamnophis elegans (Western terrestrial garter snake) ORGANISM Thamnophis elegans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045558.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Thamnophis elegans Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6095 /organism="Thamnophis elegans" /mol_type="mRNA" /isolate="rThaEle1" /db_xref="taxon:35005" /chromosome="Z" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: Born in Anne Bronikowsk lab at ISU; MOM, 2012; Eagle Lake; PAP" /lat_lon="42.02482 N 93.64411 W" /collection_date="01-Apr-2018" /collected_by="Anne Bronikowski" gene 1..6095 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:116520837" CDS 848..5677 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1 isoform X4" /protein_id="XP_032091129.1" /db_xref="GeneID:116520837" /translation="
METQIGQTTSVIKNSKKNESGDSDQLFSLPFPVKSHNLREDTLDILSRQYGRLPYTILNILKNCNIETALEQSACLLITEANVPKNNNSVKLCFWKQTKKYCNTTFSITNTACLENFDIRILEKKIEKSALVKYRNERFEWLSMYNVPPCKKSLVVKSFDCYYIKTLQPTGIEAQSYIINCRSLHTAFDQGKSLTSKGMGQNELSSIPNVIHNIKLITQKDILVSREMSQHTKSQNAKRIKENKLSMDFKKPCKKLKMPEDLEESSVMKVLINEDISAEHDIPIEENTVAIDSAVISEKLDYNETSIFSLLDCIPDFSLELPSQNQVATMSSNETADQEHFIAYGYSIFEKPVVLKTDKNESKEIEPFIDFSKMDENKSIAETVDIEKNMVCNSNATPYMKRKRTCNIKTKKTGRKPCLYSCQRAIPISGKNTWPRESCARTSLSICKNHALDSHRGYLEDTDSVTKWSKLEVHKPLVDSCKISLNTMECAVESPFSDCILHMGKIFSPITENRFSYDDMERSKQSTEIVESKVVLNLLKEKGKSINIQNDSFASIRKNRTDNPSVTKQKTVLKNLTSGTLSNFKIPLLEGKGNFRKLETETSSEKDTGNSSNILENVLSPKEARIKMASSDKKFSSQIQSEQENYTSALEKYMHQFNSDISENVSKKRRICNTFENTSHKNKLKSPTLNDTPFSLNTGNIEEQMLNSALASEIIDKVNVNNKLAQESDDICPDILKAYEDDILVIDVIQDDPDLFGDNVKQEDDTAKINNTKNIYSSHFSEKDLEWKSESSQFSKSKHLKFIRESRFQDYETLKLDDNADGLVIQGGISESSPEDGQLSELNKLTKVFDTDEKYEFSKKLLAMQEQKTNVQDFAKIENTLTIEPLSCDHQLELSFPTAKAIVPQQQDPTLKSRSNDFRFPRKCPPLPSSSTNSYKTWKEKKHPGTYLGLTLPRGYCRYYFNSLNSCENPKCWFSHVLESTDDKLCSEIIKKYISIGGVALLQRAVHIFSDYCKKSIPVYHLDLQMFHDLLTSLLQFCLLKELFHVVRTGIRIKILPNIDILLKIFEQVTLMKVKEAVPELSDIFYKLIDTGMVLEQEHIRHINSLLNQLHDSSQEITMVRSRFQERDFHKAIFCDFDSTIAAFKDCKEKSDWTKLGTLYVKVTRGCKNADYLEKYSWHVASILISSVKEEKPGIPFCEFATAASSCISSSMLLQWRTFSDWRWITIILVKSFNNITAVKEAVITSQMPLTPRASAPQSKTGTWITKFNVGADRDERNISSLGRIGISVMFSYYKVQQWSKAKKVLDMFHALRIHFTLLKGLLESQQSVSRCQVVNVAVEIFLKCRNIDGALWVLRGSEWIINTAAWPCEKMDVLNRHNLLCAVASELMTKNRYDETFEVLKNLPGFQNTCDSLDVSQYGLLFNNLLRVCSENRNIETSSTVVAFMLARNIHVEFNLLRALITALGRSCLWLKARKHYKSALALGCYPPLEGNLYRKLLLIPSYMSEVEMLLAIEIFLVSNASSIQSPGASSQMLQIVLKRCEGNIQNCEEYQNATERLFQAAQISNPKLFINHLTVNVNKDQIYSLEHTSVLKWLKENMKWAGKAWLF"
misc_feature 4286..4996 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
gagcaagcgcaccaacgcagatgtggaggtggcggcggcagctttgggtggcccggaaagagagcgtttaattaaggcaacctggtttggtttttaatgcgataattgagtttggggggtgggggtagaaggaaattatctatgattcctatggttagggggtcttctcaatacagctttttgcattgttcgctttacagtaattcgaataatgttccttcggatttattgccgacgcgatgtgcaaaagttgcgaactggggaatctgcgtaggcggtagacaagtgccgtctccgctttcttctggagaagagtctacgcaaactcggctacttttcagcatctggacagacatcctcccgttggcttaaagccttcagtatctcaaaaattaagacgatagaagcaggctctggtttttgaagacaacatatttatctcgttttctcctaattaacctttcagttataacatctccgaagaagaaactttgggttaatgtatagtgcctttacttgaatggctttcttaacactgtctttaaatgcttagttcttcttttacaaaaacgaactaaaacaattaagattgagcttgtttggtaacaaaaccactagcaattcttatattgtaattatgttgaccaaagaagaatttatgtctagttttggtgagccatagttgaatgtgagtttctcagaagctcacaattggcttcctgaaaagctcatttgtttctaagcttttaccagcacattttgcctattctgttgcctaaaattaatttgcaaacattagaaaattaatccgtagtgcatttaattttgtttgttactagaagttggaatggaaacccaaattggacagacaacatctgtgataaaaaactctaaaaaaaatgagagtggggacagtgaccaattgttctctttgccatttccagtgaaatctcataacttaagagaagatacccttgacattttaagtagacaatatggaaggctgccatatacaattctgaatatattaaagaactgcaacatagagacagcattagaacagtctgcatgtctactgataactgaggcaaatgtgcccaagaacaacaattctgttaaactttgcttttggaagcagactaagaaatattgtaacactactttttctatcacaaatactgcatgtctagaaaattttgacatacgaatacttgaaaagaaaattgaaaaaagcgcattggtgaagtatcggaatgaaagatttgaatggctttctatgtataatgttcctccctgcaaaaagagtctagtagtaaaatcatttgattgttattacattaagacattacaacctacaggtattgaggctcaaagctatataattaattgtagatctctgcatactgcgtttgatcaaggaaaatccctaacttctaagggtatgggacagaatgaacttagtagtatccctaatgtaatacataatataaaattaatcacacaaaaagacattttggtttcaagagaaatgtcccagcatactaaaagtcaaaatgcaaagcgaatcaaggaaaataaattgtctatggattttaaaaagccatgcaaaaaactaaaaatgccagaggacttagaagaatcatcggtcatgaaagttctcataaatgaagatatttctgctgaacatgacataccaatagaagaaaatactgttgccatagattctgcagtaatttcagaaaaactagattataatgaaacaagtatcttttctttacttgattgtatacctgattttagtctagagctgccttctcaaaatcaagttgccaccatgtctagcaatgaaacagcagaccaagagcacttcattgcatacggttacagtatttttgagaaaccagtagttctcaaaacagacaagaatgaatcaaaagaaatagagccatttattgacttcagtaaaatggatgaaaataaatccatagcggagacagtggatattgaaaaaaatatggtctgtaatagtaatgctactccctacatgaaaagaaaaaggacatgtaacataaaaacaaaaaaaactggtaggaaaccgtgtctgtatagctgtcaaagggcaatcccaattagtggtaaaaatacatggcctcgtgaatcatgcgcaaggacatccttgtcgatttgtaaaaatcatgcattggattcacatagaggatatttagaagatactgattcagtaacaaaatggagcaaattggaggtccataaaccattggtagatagttgtaaaatatctctaaatacaatggaatgtgctgttgaaagtccattttcagactgcatattgcatatgggcaagatattttcaccaattactgagaataggttttcttatgatgatatggaaagatctaaacaaagtactgaaattgtagaatcaaaagtggttttgaatttattaaaagaaaaaggaaaaagtataaatattcagaatgactcatttgcaagcattaggaaaaataggacagataatccatcagttaccaaacaaaaaactgtgttgaaaaatttgacatcaggaactttgtcaaatttcaaaattcctttacttgaaggtaaaggtaattttagaaaattagaaactgaaacatcatccgaaaaggatactggcaattcttcaaatattttagagaatgttctttctccaaaagaagctagaattaaaatggcttcatctgacaaaaaatttagctcacaaatccaatcagaacaggagaattatacgtctgcactggaaaaatacatgcatcaattcaacagtgatatttctgaaaatgtttctaaaaagagaagaatttgtaatacttttgagaatacttcacataagaataaactaaaatcaccaactttgaatgatactcctttctctttgaatactggaaatatagaggaacaaatgctaaattctgctttggcctcagaaattattgataaagttaatgtcaacaataagttggcgcaggagagcgatgacatttgtccagatattcttaaggcttatgaagatgatattcttgtaattgatgttattcaagatgatccggacctgtttggagataatgttaagcaagaagatgacactgcaaagattaataatactaaaaacatttatagcagtcacttttcagaaaaagatctggaatggaaatcggagtcttctcaattttcaaaaagcaagcatttgaaattcattagagaaagccgctttcaagattatgaaacactgaaattggatgataatgctgatggtttggtgatacaaggaggaatatcagaatcatcccctgaagatggacagctgtcagaactgaataaacttaccaaggtttttgatacagatgaaaagtatgaattttcaaagaaattgcttgctatgcaagaacagaaaacaaatgttcaagactttgcaaaaattgagaataccctaacaattgaacctttgagctgtgatcatcaattggaattgtcatttcctactgcgaaagctattgttcctcaacagcaagacccaacactaaaatcaaggagtaatgatttcagattcccaaggaaatgtcctcctttgccctcatcatctactaatagttataaaacctggaaagaaaaaaaacatccagggacttatttaggattgactttacctcgtggatactgcagatactatttcaattcattgaatagctgtgagaatccaaaatgctggttttcgcatgttcttgaatcaacagatgataagctttgcagtgaaataattaagaaatatataagtattggtggcgtagctttgctgcaacgggcagtacatatattctcagattactgcaaaaaaagtattcccgtatatcacttggatttgcaaatgtttcatgatctcctaacatctttgcttcagttctgcttgctgaaagaactttttcatgtagtgcgcactggcatcaggattaaaatattaccaaatatagatattctactcaaaatatttgaacaagtgactttgatgaaagtcaaagaggcagtacctgaattatctgacatcttttataagcttattgatactggaatggttcttgaacaagaacatattagacatatcaacagcttactaaaccagttacatgattccagtcaggaaattactatggttaggtccagatttcaggaaagagattttcacaaggccatcttttgtgattttgattcaacaatagcagcatttaaggattgtaaagaaaaaagtgactggactaaattgggaactttgtatgttaaagtgacaagaggatgtaaaaatgctgattatcttgaaaaatactcatggcatgtagccagcatactaatcagttcagtgaaggaagaaaagccaggcattccattttgtgaatttgcaactgcagcctccagctgtatctccagttcaatgctgctacaatggaggaccttttccgattggagatggatcaccatcatccttgtcaaatcattcaacaacattactgctgttaaagaggcagtgatcacatctcagatgcccctcacaccaagggcatctgctccgcaatccaaaacaggaacttggattacaaaatttaatgttggtgctgatcgtgatgaaagaaacatttcttcattaggacggattgggattagtgtcatgttttcatattacaaagtgcaacagtggtcaaaggccaagaaagttctggatatgtttcatgctttaaggatacacttcactcttcttaaaggacttctggaatcacagcaatcggtatcaagatgtcaggttgttaatgttgctgtagaaatctttctcaaatgtaggaacattgatggagcattatgggtattgagagggtcagaatggataataaatacagcagcatggccttgtgaaaaaatggatgtcctaaatcgacataatctgctgtgtgctgtagcatctgaattaatgacaaaaaaccggtatgatgaaacatttgaagtcttaaaaaatcttccaggttttcagaatacttgtgactctctggatgtatcccagtatggccttttgtttaataatctgctaagagtttgttcagaaaacaggaacattgaaacatcatctactgtagtggcattcatgcttgcaagaaatatccatgttgaatttaatttacttcgagcattaatcacagcactaggaagaagctgtttgtggcttaaggccaggaaacattataaaagtgctttagcattgggttgctatccaccactagagggaaatctttatcgtaaacttttattaattccttcttatatgagtgaagttgaaatgctattagcaattgaaatttttttggtttcaaatgccagtagtattcagagtcctggagcttccagtcaaatgcttcaaatagtattaaaaagatgtgaaggtaatattcaaaactgtgaagaatatcagaatgctacagagagactatttcaggctgctcagatatctaatccaaagcttttcataaaccatttgacagtcaatgttaataaggaccaaatttatagtttggagcatacttccgtacttaaatggttgaaagagaatatgaaatgggcaggaaaagcctggcttttttagtcaagatttggttacagtaatcattgcttaaaataaataaatgaagattgtttatgttgtttttagactcttaataatttgatattttggtttttaacattaaaaaaaccattcagaatatattttcctaggcatggttattcagaagggcctgttcttgatcatttaccttttttttctgtgtctaaatatgctcacagttcagggttagaattagaggtttcataatctttaccgtctttcaaaaacaaggttgttgccatgcaaataagtttatagttctgaagacagtatataataaaattttatagtttgggaaatacttgcgtactaaaacagttggcttttttagtcaatgaagactttcgttacagtaatcattgtttaaaatgaatcaataaagtttgtttctgttgta
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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