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2024-03-30 00:16:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_031793299            5265 bp    mRNA    linear   VRT 09-DEC-2019
DEFINITION  PREDICTED: Oncorhynchus kisutch testis and ovary specific PAZ
            domain containing 1 (topaz1), transcript variant X4, mRNA.
ACCESSION   XM_031793299
VERSION     XM_031793299.1
DBLINK      BioProject: PRJNA378663
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus kisutch (coho salmon)
  ORGANISM  Oncorhynchus kisutch
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_034190.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oncorhynchus kisutch Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5265
                     /organism="Oncorhynchus kisutch"
                     /mol_type="mRNA"
                     /isolate="150728-3"
                     /db_xref="taxon:8019"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="juvenile"
                     /country="Canada: Vancouver"
                     /linkage_group="LG17"
                     /note="double haploid"
     gene            1..5265
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:109908619"
     CDS             510..5093
                     /gene="topaz1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X4"
                     /protein_id="XP_031649159.1"
                     /db_xref="GeneID:109908619"
                     /translation="
MLPSTGRVKLNRSVLKVEGNNGLPSVPRRRRPFKVLYSPTGDTHGDPNSISKTLECSSQNEENSELKTKDDFVLGYTESTVLKSENHNFPPYLGTEKGHLASETAVGKTTAVPADSGEQRSPPLTECEDIDRSPIVTRHRPKPPLSSPSCPQRSVRRVVKTLCCALCGEIKYTPPKRRKLTRVEPVGVTGRGRAIVLSRVVGLEQPTVRVKTRKNFTSTIKAPKKLVIWIGRYPKVKLCDVAQVCDVSVGGFSCLLPAQLLTSKVVHCFKWDYRSKVGLLGPSCCSRGSHGSETTWERISRKKLHHSSQCGKNGQLLTQTEIHQCMHTGAHRLTESNRSASLAASDRGMSEASTNGFACLSLGKQQVSRGSSGAGTHDRGILEDSGAGSDDVETGKPVAKRMRLGDVHGDLMEQKHSSPSEPELGPGIAITSLEDSGTMSEMPCEVPPHLHTSHVSRSHSNATDAPLRSHHFMTEDGGWRGGPGGGDRSLESPANGTLSPWSMENGVGVDPPSDSDTEDQDLFSCRRVVAYIKRLHLSCARTYLSWPFPKPDSAQSLSVTSSVLNANGPLTPPAESVSSAVGCVNGALVNGYGDSLMRAERTRVLTSHCTLTEYTPQTSYQVYAHRNGMQGEGNMMEEKDMSNGREGGGEEDESMTQFSLSPDTSSKVYPSHPLCHKKPQSQLRTRGLHRNKASISPPPKAPTISALLTPPKNHSETDPILSVSSNLSQTDTDTVSCLSPPKTDSVSTFPPAKVSGGGETAYTPPPIGVGSDIATAAFLLFSSASQNIETSPPPSSPTPSSFLTPSSPRRKDEGGAMFNATSSPSAVDSKTDTSHSNSFHSAESSPLPPDFSCLSAESSFLSSSSSLLPQEKRKAEGVEVQSREGDEMKGEAAASGELKVLVLPGSESSSPEKQEHQRPEQKSTQGGSSLGKPKEGEAVVATISNLAPGILGGQTPMLCITRLMLQTQSYSEEDDDFVDQKEKLSSGVGVGTQAQASSTDEDDGTCGEEGTLEPVRTQPCTDEDDVDHHNQSTSCTKVTSENQEAGTPSSSGSHTQHQEVEVRAGSKVKLASDPKAHLLDEFTAYEQDILLVDVLLDDPELFGSLPQDLEPMLGSTRGRRAPRARTTIGAGRALLLTGAGPSWATEKSSTTGTDGPPGFKTDQRRIIHFKDEESSGRSWRPVASSNPMPAVVHSNSWPPTVHALHPDQGGTDYNYSPMKAEISERAQAFQSLNSFKSTLPYLMTGDSWCNEHTASCKDPAAADTGPQRQFDSYCKYYFSMSDCFHKTCWFLHVPKRGDEKFCVETVLRFVRSSNPVCLQRAVSVFTSYYQFSPPGVYHTPLVLNSLLAALLKAGFLSDIITVLHVSTAHNILPSPAFLLALFDYVGERDQSILPELIQLTSKMVDAGLGLNVDQCERVLHMFLQSPQYHPADSPENYTTKPGNHRSMNTDAPTPEALSLAHALVELCSQQEDWGRLGVVFRSICHSHRSLVDLQHFSGCVAIALLEGDKDRLALPFASFTETVYQET"
     misc_feature    4899..>5084
                     /gene="topaz1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      
agctccgctgcaacaggtgtgatttaaatgagaagtgaggcagggaaagctagcctgacaggctctacataacattttcaattaacgagaacgtttgaaaccagagttgtttgtaagaataatttgtgtaaacaagtcgtgtagggctactaatttcggtgacattcttatcacgtagccctactaattctgcatttgcatcgaaattgaatggagcgattttcgcctactagccagcgtctgaatttgacatttgtgttatttatttatcatccgataaatagttatagcccgtgcacggtatttcccgttgcctaagttaaactttgtttattttattagtgggaagagacaattttggtttacattttttctttcaaagttagcttttgaacagattctaggtttatcaaactctaataacgcattggcagacaaaaagtaaagaaaaaacggtgcaaataaaatatttttcgtgttcgctgataaaatagctctgaaatgcgaccatgctcccatctaccgggagggtcaaattaaatcgaagcgtgctgaaagttgaaggcaataatggactgccaagcgtgcccagacggagacggccattcaaagtgttgtactcgccaactggcgatacacatggcgatcctaacagcatcagtaaaactctggaatgctcttcacaaaacgaggaaaacagtgaattgaaaacgaaggatgattttgttttggggtacactgaatccacagttttgaaatccgaaaatcataatttccccccatacttggggacagaaaaggggcaccttgcgagtgagacagctgtcggaaaaacaactgcggtgccagcagacagtggggaacagaggtcaccaccattgactgaatgtgaagatattgataggagtcccattgttacacgccatcgccccaaaccccctctcagctcgccatcctgtccacagcggtcagtcaggagagtggttaaaaccttgtgctgcgccctgtgtggagaaattaaatacacgccccctaagagaaggaagctgaccagggttgagccagttggagtgacaggcagaggcagggccatcgtcctcagcagagtagtagggcttgagcagcctacggtcagggttaaaaccaggaagaatttcacctccaccattaaggcccccaagaagctggtgatctggatagggaggtaccccaaggtcaagctctgcgatgtagctcaagtatgtgacgtctcggttgggggcttttcctgcctgctgccggcccaactcctgacttccaaagtagtgcattgtttcaagtgggactatcggagcaaagttggtctgttagggcctagttgttgcagcagagggagccatgggagtgagacgacctgggagcgcattagtagaaagaagttgcatcactcttctcagtgtgggaagaatggtcagcttttgacgcagactgaaattcaccagtgcatgcacacgggggcgcacagattgactgagtcaaatcgttctgcatctcttgctgcctcggatcgcgggatgtctgaagcctccaccaatggttttgcttgtctctcactaggtaagcagcaggtgagcagggggtcaagcggggctggaacgcatgacagaggcattcttgaagactctggagcaggaagtgatgacgtagaaacaggaaagccagtcgctaagcggatgagattgggtgatgtccacggagacctaatggagcaaaaacattctagtccaagtgaaccagaactgggtcctgggatagctatcacttcccttgaagacagtgggacgatgtcggagatgccatgtgaagtcccgccgcatttacacacaagtcatgtcagtcgtagtcatagcaacgctacagatgctcctctgagatcacaccactttatgacagaggatggaggctggaggggagggcccgggggaggtgacaggtcactggagtcccctgccaacgggacgctgtctccctggtccatggagaacggagtgggagtagaccccccctctgacagcgacactgaggaccaagacctgttctcctgtcgtagagtggtggcctacatcaagaggctgcacctgtcctgtgcacgcacctacctctcctggcccttccccaaacctgattctgcacagtcactctctgtgacatcatcagtcctcaacgcaaatggaccactgacacccccagcggagtctgtgtcatcagctgtgggctgtgttaatggagccttggtgaacggatatggagactcactgatgagggctgagagaaccagagttctcacctctcactgtacactcactgaatacactccacagacaagctaccaggtctatgctcataggaatgggatgcagggagagggaaacatgatggaagagaaagacatgagcaatggaagagaaggaggaggagaagaggatgagagcatgacccagttttcactctctcctgacacttcaagcaaggtgtacccatcccatcctctctgtcacaagaagccacagtcccaactcagaactaggggtctccatcgcaacaaagcttccatatcccctccacctaaagctcccaccatctccgccctcctcaccccacccaaaaaccacagtgaaactgatccaattctttcagtttcctccaacctttctcaaactgacacagacactgtttcttgcctctctccacccaaaactgactctgtctcaaccttccctccagctaaagtcagtggcggtggggagacagcctacaccccccctcctataggcgtcggtagtgacatagccactgccgcctttctgctgttctcatctgcatcccaaaacatagagacatccccaccaccctcctctcctactccctcctcctttcttactccctcctcccctcggaggaaggatgaaggtggggctatgttcaatgcaacatcctccccatcagctgtggacagtaagaccgacacgtctcactcaaactcctttcactcagcagagtcatcccctcttccaccagatttctcctgtctttcagctgaatcctcctttctctcatccagctcctcacttctgcctcaagaaaaaagaaaggcagagggagtggaggtgcagagcagagagggagatgaaatgaaaggagaggcggctgcgagtggagaactgaaggttttggttttaccaggcagtgagtcctccagtccagagaagcaggagcaccagcgtccagagcagaagagcacacaggggggctcgtcgcttggcaagcccaaagagggagaggctgtggtggccacgatcagtaacctcgcccctgggattcttggaggtcaaacaccaatgctgtgcataacacgcctgatgctgcagacacagagctactcagaagaggatgatgactttgtagaccagaaagagaagttgtccagtggagtaggtgttggaacacaggcccaggcatcctccactgatgaagatgatggtacatgtggtgaagagggaacactagagcctgttagaacccagccctgtactgatgaagatgatgtcgatcatcataatcagtccacctcctgtactaaggtcacgtctgagaaccaggaagccggcactccttcctcttccgggtcacacactcaacaccaggaagtagaagttagggcagggtcaaaagtcaagctggctagtgaccccaaagctcacctcttggatgagttcacagcctacgagcaggacatcctgcttgtggatgttctcctggatgacccagagctgtttggcagcttgcctcaggaccttgaacccatgctgggttcaaccaggggacgaagggcccctagagccaggaccaccattggggcagggagagccctactactcacgggtgcaggtccctcatgggccactgagaaaagctccaccacgggtacagatgggcctcctggttttaagactgaccagagaagaattatccactttaaagatgaggagagttcaggacgatcttggagacctgtagccagttccaaccctatgcctgccgtggtccacagcaacagctggccccctactgtccacgcgttacatccagaccagggtggaactgactacaactacagtcctatgaaggcagagatctctgagagggcccaggccttccagtctctgaactcatttaagagcacactgccttatctgatgactggtgactcatggtgcaacgaacatacagcctcatgtaaagacccagcggcagcagacaccggccctcaaagacaatttgacagttattgcaagtactatttcagcatgtcggactgtttccataagacctgttggttcctccatgtgcccaagagaggagacgagaagttctgtgtggagacggtgctgaggtttgtcaggtcttccaaccctgtctgtctgcagagggcagtgtcagtgtttacgtcgtactaccagtttagtcctccaggtgtctaccacacccctctggtcctgaattctctcctggctgctctgctcaaagctggctttctgtctgacatcatcacggtgctgcacgtcagcaccgcccacaacatactgcccagtccagcgtttctcctggctctgttcgactatgtgggagagagagaccaatccatcttacctgaactcattcaactcacctctaagatggtggatgcaggcttggggttaaatgtggaccaatgtgagcgtgtcctacacatgttccttcagtcgccacaataccacccagcagactcacctgagaattacacaactaaacctggcaaccacaggtcgatgaacaccgacgctcccactcctgaagcgctgagtctggcccatgctctcgtggagttgtgttcccagcaggaggactgggggaggttgggtgtagtcttccgctccatatgccactcccacagaagccttgtcgacttacagcacttcagcggctgcgttgccatagcgctgctcgagggggacaaagacagactagccctgcccttcgcctccttcactgagacagtgtaccaggagacctaggactgggatgatattatactgaacaaaaatataaacacaacatgcagtgttggtttcatgagctgaaataaaagatcccagaaatgttccgaatgcacaaaaaatggatttctccacttggtgtgaacatcacatccctgttagtgaacatttggcataggagaagataatc
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]