2024-04-26 23:11:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_031723902 4394 bp mRNA linear PLN 27-NOV-2019 DEFINITION Blastomyces gilchristii SLH14081 RNA interference and silencing protein, variant (BDBG_09197), mRNA. ACCESSION XM_031723902 VERSION XM_031723902.1 DBLINK BioProject: PRJNA41099 BioSample: SAMN02953742 KEYWORDS RefSeq. SOURCE Blastomyces gilchristii SLH14081 ORGANISM Blastomyces gilchristii SLH14081 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Blastomyces. REFERENCE 1 (bases 1 to 4394) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE The Genome Sequence of Blastomyces dermatitidis strain SLH14081 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4394) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-NOV-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4394) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE Direct Submission JOURNAL Submitted (06-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_003101647). FEATURES Location/Qualifiers source 1..4394 /organism="Blastomyces gilchristii SLH14081" /mol_type="mRNA" /strain="SLH14081" /db_xref="taxon:559298" /chromosome="Unknown" gene 1..4394 /locus_tag="BDBG_09197" /db_xref="GeneID:8501149" CDS 1494..3557 /locus_tag="BDBG_09197" /note="At least one base has a quality score < 10" /codon_start=1 /product="RNA interference and silencing protein, variant" /protein_id="XP_031581270.1" /db_xref="GeneID:8501149" /translation="
MYTLKVTRTGTLQVSALVDYLSSTSANAVFGGKEEVIQALNVVMGYYPKDSEHIANVGTNKHFFINPPDVEKWDLTGGLEVLRGFFGSVRAATARILLNVQISNVAVFAEGPLPRVMMSFFQSYGHSMGKLDRFLKSVRVQLTHMKKVGSDGREVLPIKTILGVATIDDGRGMKNKPRVQRVGAGPKDVTFYKEPNADDEMLGANTSSTAGAYVSVFEFFRDIRKITLENPDLPVVNIGSRERPIYLPPDVCIVLPGQAPNMTLSTTQTQQMIKFAVRRPALNAKSINTKGAQILGASQPANSTLAGFGLAVQPGLITVPGRVLQGPQVRYKSVGRDARPPTNPNSGSWNLQRNQFSVAKPLKNWACLWIQKRDTSLPWPDAETLSSQALDPFIRQLKQLGMTVDQPLIHICPDDFERSIEEHIASVLQFKPSLQLIFFILPVVSSIYSRIKYLCDVKWGVHSICVVAGKFAKERNCHLLQNPAWRLWAKQPPATRLPRKTSLRVPRRRLQEGAVQTPSLNEGTCPLLQKGLPASPIPRRQAGHRKEASRAPSRIIIRRPRRQQHAAFFGLPRPPPPTASFNPRNGTVVDRAVTDARNWDFFLQAHTPLHGTARPGHYYPVYDEIFRSSVVKPSLARLTGGIGANVADAVEALTHNMCYLFGRATKSVSVCRRRIMRIWSVRGLGVI"
misc_feature <1497..1625 /locus_tag="BDBG_09197" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1665..1817 /locus_tag="BDBG_09197" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1821..2258 /locus_tag="BDBG_09197" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1956..1958,2064..2066,2139..2141,2151..2153, 2205..2207,2226..2228,2232..2234) /locus_tag="BDBG_09197" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2403..3506 /locus_tag="BDBG_09197" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cl00628" /db_xref="CDD:412485" ORIGIN
aaaaaataactcaccgtttcgtggctgctttcaagcttgtcaatcagtagttaaataccctttctttggtaatttctgaaggggaaataattatttctaccgttttacatttagctctccatgcttgttgctgctgctgattgttcttggacatgttcaatttctgcttattccctttttatgtcctccgttttctttccttcattcaagctctacaagggatcttacccccgttctcgttctcgttctcggctacaaccaaatggaacaatctaacatcaaaaggagaagtctgcatggcaaaatcgtgcattcaggatacgggggactagggaaaattgcgacagccctagagggagggccgttgggaaacaagcaactccattcaatgaaggcttgaagccttgaatcctggaaaccccttcgacatggcctgcatatccccttggtactcccgtttgcacaaacccgaaccgtctgttcatttgccgtacgcactcttgtatatatatttggcggctgttcccgcctcctcgccgtctgcatcatgctatgtcttgctcttcagcactcatctacaagtgtgtgcgtttggttggatacatcatataatgattatcatgaatctctgacggcttatttgataccccttacacttcttttacatttaccgatcttgaatcccctattttctacaattgtgtcgatttactctgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagatgtcaggaaagccacagaggaaaggtcgaggatcagcgcgagttgaccgcggtggtggtggaggtggccgcgggggccgggatgggggtgggcaaagacatcctatatttggacagactcctgacacccctcgtaataggagagagggcgtcgcgagtggagacgccgcccaagcaagcgccataagttgtgctgggttctccgatctggaaatcttctcgtaactactattttccatttcctacaaggcgagttgacgggttagagctaatgacatgaatcactcctcagatatcaaagtcatgtcccccaaccaaatagtacggttcagagcgtcgaaaatcatgtcaacactgccgttctagccttgagttcgacatccaaggagcccaaactgccccagcgtccaaccttcggaactcaagggaataaagtcaccctatacgcaaactatttcgagttggccgtgaagcaggatctttctctctaccgctataaaatcattctagatccggatgaaaagggaagactccccatcggcagaaaagcgaaacagatcatccgcctgttcctggatcaggagttttataagctcagcgacaagatcgccagtgactttaagtccaccatcatcagcagcgtggaactcgaacctcttcaaaagttgccttatatagtcacgtaccaagccgaggatgagctagagcccgctccaaatgccagaatgtacactctcaaagttactcgcactggtactctgcaagttagtgcactggtggactacctttcttctaccagtgcaaatgctgtattcggcggcaaggaagaggtcatccaggcactgaacgtcgttatgggatactaccccaaagactcagaacatatcgccaatgtcggtacaaacaagcatttctttataaacccccctgacgttgaaaaatgggacttgaccggcggactagaggtgctacggggattctttggcagcgtccgtgcagccactgcacgcattcttctgaacgttcaaatcagcaacgttgcggtgtttgcagaaggtccattgcctcgggtgatgatgagtttcttccagagttacggacacagtatgggaaagctggacaggttcctaaaatcggtccgcgtgcagttaacgcatatgaaaaaagttggtagtgatgggcgcgaagtcctacccataaagactattctaggcgtggccactattgatgatggccgcggaatgaaaaacaaaccaagagtgcagagagttggtgccggaccgaaggatgtgacgttttacaaagagcccaatgctgatgatgaaatgttgggcgcaaatacttctagtacagctggcgcctacgtgagcgtgtttgaatttttcagggacattcgcaaaattactctggaaaatcccgatcttcccgtcgtcaatatcggaagccgggagcgtccgatatatttgccccctgacgtgtgcattgtattgcctgggcaggctcccaatatgactctaagcacgacccaaacccagcagatgatcaagtttgcggtccgccgccctgcgctaaatgcgaagtcgataaatacaaaaggagcacagatcttaggcgcttctcagcctgcgaactccactttggctggatttggacttgcagtgcagccgggattaattacagtgcctggacgagtcttgcagggcccacaggtcagatataaatcggtagggagggatgctcggccacccacgaatccgaattctggcagctggaatttgcaacgtaatcaattctcagttgcaaaacccctgaagaactgggcatgtctctggattcagaaacgcgatactagtctaccttggccagatgctgaaacgctttcgagccaggcattggatccattcattagacagttaaaacaattgggcatgactgttgaccaacccctgattcacatatgccctgacgactttgaacgatcgatcgaagagcatattgccagtgtgttacaatttaaaccttcgctccaacttattttcttcatcctccctgttgtcagcagcatctacagccgcatcaagtacctctgcgatgtcaaatggggcgtgcatagcatctgcgtcgtcgccggcaaattcgccaaagaaaggaactgccacctcctccaaaatcccgcctggcggctctgggccaaacaaccacccgccacccgcctaccccggaaaacatccctccgtgtaccgcgacggcgtcttcaagaaggggcagtacaaacaccgtccctgaacgaaggaacctgccccctgctccaaaaaggcctgcccgcctcccctataccccggcggcaagcaggacaccgcaaagaggcctcccgcgcgccctctcggatcatcatccgtcggccaaggcggcaacaacacgcggctttctttggcctcccgcgcccgccgccgccgaccgcctccttcaacccgcgcaacggcaccgtcgtcgaccgcgccgtcaccgacgcccgcaactgggacttcttcctgcaggcccacaccccgctgcacggcaccgcccgcccgggccactactaccccgtctacgacgagatcttccgctccagcgtcgtcaagccatccctggccagactgacgggtggcatcggggcgaacgtggcggatgcggtcgaggcgctgactcataatatgtgctatctgttcgggcgtgcgacgaagtcggtgagcgtgtgtcgccggcgtattatgcggatctggtctgtacgagggctaggtgttatttgagtaggttgtttgaggcggggtcggcggcggggtctgtagcggcagggtctgtggcggtgggtggtcgataaagataaagtttggaggtggggttggcgaagttgtctacggttacgccgcaggggggggagggggatggagggaatgatcagcaggaggctagggtaagtgaggtgaggatccatgagttggtgagggattcgatgttttacatttaggagggtggtttgggatgggtgaagctaggaggaattattttgttttgttttcttggatgcatgtgtattttcttctaggtataactagatgacttgttgtgttacacggtgaatctctaacgttctacttttgtcagtattacctgcattctatagggagaaattacactttatcacgaatatatctgtctgtgggaaaagtaagatgcgagaagtgttttgaggaggtacattgtacatgtacatacaattgaagtgactggtggttttggagcgagttaattcaagctaaataatcatacaacagaaccggaaattttcaagaaagggaaagatggaaagaggaagtcttgagaacaaacgggcaagaaggaagggaacaagcggataaactaaacattataaaaaacagggagcgggacagaagtaagagatgcatgtaaattcaaaagggttcgaggatagggtgacagttggttggcggtaataaaaggtgttttatggtaaacgcacaagacagatgcttaatagattaaaataaaaacggagatggacgatcttctccaattccttttgttttttatatccccctttctttttcctttgctcttctttttgg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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