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2024-04-27 08:01:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_031663427            6203 bp    mRNA    linear   PRI 20-NOV-2019
DEFINITION  PREDICTED: Papio anubis testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), transcript variant X2, mRNA.
ACCESSION   XM_031663427
VERSION     XM_031663427.1
DBLINK      BioProject: PRJNA576697
KEYWORDS    RefSeq.
SOURCE      Papio anubis (olive baboon)
  ORGANISM  Papio anubis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Papio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044977.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Papio anubis Annotation Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6203
                     /organism="Papio anubis"
                     /mol_type="mRNA"
                     /isolate="15944"
                     /db_xref="taxon:9555"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="whole blood"
     gene            1..6203
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101026148"
     CDS             2165..5860
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X2"
                     /protein_id="XP_031519287.1"
                     /db_xref="GeneID:101026148"
                     /translation="
MRRPPPLGPTTASGPEGNVRNLRKRQAPGSGAAGGCGPEAGGRGENRQKRRMVARATPGRGEVKSDKSVAASGAGKAARRRMEGRRGQVSPSDRRGLEAAKEAELPLQTERHTKEKRKVTEASSDDPQPGFDLVRKESLTSLESFQTVECLRSLGKEGIVEGIKRRIRNKKLKSLENPPLKITENEATQNIKVEFQDELYKNTLKYSCNILSPELENNSVFKLRDCSCFPHSKDCNDENNLPYEPDGGCMHVAENFSQKENFRSLAEKSDTNNIPQLLQTEENVMGVNKLLPEESDLYQSKINGLLPCLQREKNKYSIEESSVGRKPRKRMKLSEKADETVTQMNFSNEYNKSELMLQENQMIADGKEAETKSPLNVLRQVSHNTVSLMDHLLSVPEMVEKETSSEHHVNAMFQKTIEPLLKEETENASEPLGYENMALKEDFKSKSFIGKSPEYHIERRSSREDLRSDSEELKLSCQRTIPMTGKRTWPYYSCARISAWCWKKASLPESSYFLPGSQKSCKKVDVPKHQINKTHLTDSKLLLQSSLTETNTESSSKEKLDSNLNCLFSVSAVEHTLMVIKEPIIKDDKKIKSEELSRSGSEVISNTTEDTQLTSDTQSLTGNKKRDRGNLTKLNLTAASKDGQEANNSTGKTIHRKACVAKQTFVVPDLVKILNTGRLTNFKIPLLKNKTKKRKEVNAKSSEREAYSPLELLDNLSGADTRHNRSKENVSMTMLGPQTLSIQNNVTPVQASSDSFYNKNSCSISPSFTKHGNSSKLSSHFSEPGNIVSNKEVASLTVENNAFSCDPGYVEKSPSFCCNKQETFRPVSSEVRGRKITKNFSEVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGDLSFTSEVPRISQDPSVPGEHQSTDSKYVETPVKKEPSDDLSRELPVLDCGLIKPDICASNSAASEIKHDPKDANTSLGEVANETSENETLGDFSEQIKGSDLDEKHRFTDKVITKEEKENIYEVRKSKDSRNADIMVGECQFAAPVPKPLCLLVPPLNLSGHQEDTILNTWMNDFRFLGKHSVLKLQNPETCEIFKREKNVGVFQKSLGLMIPYKYCKFHFNTLRGCERPLCKFAHVPEQGDEKVCMDVFKKYININELCLLQRAVNVFMEYYRKFPPGIYFDLQVLNDLLNSLLKHCLLKEVFQIVNLSIMVKMLLVEAGMVLDPEHFNYIVKLLYQVQASKQEITAVLEMKSR"
     misc_feature    <2330..>2608
                     /gene="TOPAZ1"
                     /note="Domain of unknown function (DUF3827); Region:
                     DUF3827; pfam12877"
                     /db_xref="CDD:432847"
ORIGIN      
ctcagtgtgtgtgtgtgctgaagtttttacttaacaaatctatttaatgtttataatcaactaggcattattcttactgctttacaaatattggcacatttaattctcatgagaactctgaggagatactatttcattttacagatgaggaaactgatatataaagtgaatcataaagtgactgttgaatgagcctgaaatgcttatgataacttgttataaattctgctagtcttaaactgattttccttttaccaagggtatttacaaggagaaagaaacaagaaaaatttctgtatcttttacacctcttttacttaaattccattttataaaagctcctcagaatactcgacctgagcccctcatccaaactgccatattagtcatactccatgcatcatacctaccattctttaatgctttgtattcaaattcgccaggtccttctttaaacacacagaaagcaaagattaatggaaggtatctgcactcagatggaaggaagctactaagggagacacacaaataaatagttgaactgtgtgtttgcagacaggaggaaacactttacccctcaaagtgcaagaacagtggcaggaaagtttccttgatgggtgatccttgcactcaatcttgaaggggaaatatgtagttcaccaggcagacaagcaaaggaagactttctaggactgtcaagtacagaagcacaagcatgacaaaagtatatgaaatctggggaacttcggtagtagtccaacgtggcttacgggcaggctatgtgtggtgatgagataattttcaaaaaagagaaaataatggctgtcatagatgaacatgtattaaagattatattctctcatcaggcagattttataaacattagttcaaaggataagtccaaacaacaaacattctcgaccagaaatgaaatgaatgtgaaaaaggaggcaaaactggcttcttccacagtgaaaatgggaagtcaattaaacttctattggacagaatttggatgtctatagaccattattttgtgttgctattgcttatctataatttacacagtcataaaataactgccatagaatcagaatcaactaattcggaagggtgacttctatgtagttttccatcaaagcacaacttttaccctgcagtggcagtaagagaaaaccaggtaaattttcagaggctacatcagatagggttgcagataccacactagagtttgatttctgttagttttagtctttgagcaaaaacagttcatgaagggtcaaactaagaagtgctaggatcccccttcataggagaggcatggcctggcaaggaggtggaaatttgactggaatagctcaaggatggattcagaggcttgatgcagtaggtcagtcaagaaagtctgagggccagagccacggtaatggcaagtgggagagtggctgacaaacaaaatacagtcaagcagatttagtgaaagtggatgtgagggatgaagtagaaagaaggttgtctctgctggtttctaggtttctggcttaaacaattaggcgcatggtggcacatccacctatgtgaaaggagcaagcttgtgagaatcgatgagctggtttgcccacctgagtgtgaggtgcctgtggaatatccgggtgaatatatcaggaaggcttttagacaggggcttctgggagacttggtgtggagttagaagccactggctgacagtggcctttgcgagcagccaatgagtgaggagcagcacctgggagaatgagccctgaacggttccaggaagctcggcctagtggaagggacaacggaggtctgtgatgtgatgagccccactaccgtcccttgcaattaaatcaggcgcggccactgccttcctccgggctccgcgagaggccctccggaaagacgctggcacggaactcgcgactctcctgcccgttggatcccgaagcaccagtcggagccccagacactaggccctacttccgcttacgcgccccacttccgcttccggccctgggctgtggtgactggcggtgtggggtgggtcagagggcaataggtgcctgcccgggggagcggcctttgcgccgcggtgggttcctgcgagctggtgcagagggaccccggcgggccggccccggggcacatgcgacgacctccgcccctgggcccaacgacggcctcagggcctgaaggcaatgtgcgaaacctgcgaaagcggcaggcgccagggtcaggcgccgcgggaggctgcggccctgaggctggggggcgcggggagaataggcaaaagaggagaatggtggcccgggccacccctgggagaggcgaggtgaaaagtgacaagtcggttgcggcatcaggggctggaaaggccgcaaggcgtcggatggaggggcgcaggggccaggtgagcccgtcagaccggcgaggcctagaagcagcaaaggaggctgaactccccttgcaaacggaaagacacaccaaggaaaaaagaaaagttactgaagcctcaagtgatgatccacagccagggtttgacctggtaagaaaggaatcattaaccagtttggaatctttccaaacagtggagtgcttgcggtctttgggtaaggaaggtatagtagaaggtattaaaagaagaattcgaaataaaaaactgaaaagcttagaaaacccacctctcaaaataaccgaaaatgaggctacacaaaatattaaggttgaattccaagatgaactgtacaagaatactctaaaatattcttgtaacatcttgtcacctgaactagaaaataattccgtttttaaattacgtgattgcagttgttttccccattccaaggattgtaatgatgaaaacaacctgccatatgagcctgatggtggatgtatgcatgtagcagaaaatttctcacagaaagaaaactttagaagtcttgcagaaaagagtgacacaaataatattcctcaactcttacaaactgaagaaaatgtaatgggagtaaataagttactaccagaagagagtgatttataccaaagtaaaatcaatggcttgcttccctgccttcaacgtgaaaaaaataaatattcaatagaggagagcagtgttgggcgaaaacccaggaaaaggatgaagttgtctgaaaaagcagatgaaacagttactcagatgaacttctctaatgagtataacaagtctgagttgatgttgcaagaaaatcaaatgattgctgatggtaaagaagcagagactaaaagtcctttaaatgttttgagacaagtaagccataatacagtctctttgatggatcatttattaagtgtcccagaaatggtagaaaaagaaacaagttctgaacatcatgtaaatgctatgtttcagaaaaccatcgaaccacttttgaaagaagaaacagagaatgcttcagagcccttaggatatgaaaacatggcgctgaaagaggattttaaatcgaaaagcttcatagggaaatcacctgagtaccatattgaaaggagatcttcacgggaagatttaagaagtgactctgaagaactgaagttaagctgtcagagaacaatacctatgactggtaaaagaacttggccctattattcatgtgctagaatatctgcctggtgttggaaaaaggcttccttgccagaatcaagttactttcttcctgggtctcagaaaagttgtaagaaagttgatgtccctaaacaccaaataaacaagacccacttaaccgactccaaattattattacaaagttccttaacagaaacaaacactgaatcttcaagtaaagaaaaattagattctaatttgaattgtttgttttcagtttctgcagtagaacatactttaatggttataaaggaacctataatcaaggatgataaaaagataaaatcagaggaactgagcagaagtgggtcagaggtaatttctaacactactgaagatactcaattaaccagtgatactcaaagcttaacaggaaataaaaaaagagatagaggaaatttaacaaaacttaatttgacagcagcttccaaagatggtcaggaagcaaataactctacaggcaaaactattcatcgaaaagcatgtgttgctaaacaaacatttgtagttccagacttggttaaaatattgaacacaggacgactgactaattttaaaattcctttacttaagaataaaacaaaaaaaagaaaagaagtaaatgccaagtcatcagagagagaagcttacagtcctctagaacttctggacaatttatctggagcagatacgagacacaataggagtaaagaaaatgtctccatgacgatgttaggacctcaaactttgagcatacaaaataatgtaactccagtgcaagctagttctgactcattctacaataagaattcctgtagtatttctccaagctttacaaagcatggtaacagtagcaaactatctagtcacttctctgaaccaggcaatattgtttctaataaagaagttgcttctctcacagttgaaaataatgctttttcttgtgatcctgggtatgtagagaaaagtccttccttctgctgtaataaacaagaaacattccgaccagtttccagtgaagttaggggtagaaaaataactaagaatttttcagaagtaggatttccagatattcttaaagcatatgaagatgacgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggacctctcatttacttcagaggtccccaggataagccaggatcccagtgttcctggagagcaccaatcaacagactccaagtatgtggaaactccagtaaaaaaagaaccaagtgatgacttaagtagagaacttcctgtactggactgtggactgataaagccagacatctgtgcttccaactcagcagcaagtgaaataaaacatgatcccaaagatgcaaacacttccttaggagaagttgctaatgagacctctgaaaatgaaacactgggagacttcagtgaacaaataaaaggttcagacttggatgaaaagcatagatttacagacaaagtgattaccaaagaagaaaaagaaaatatttatgaagttcgcaaaagcaaagattctagaaatgccgacattatggttggcgaatgtcagtttgcagcaccagtcccgaaacctctgtgcttattagtacctcctttgaatctaagtggtcatcaagaagacacaatactgaatacctggatgaatgatttcagatttctgggaaaacattctgtcctaaagctgcagaatcctgaaacttgtgaaatatttaagagggaaaaaaatgtgggggtgttccagaagtccctagggttgatgataccctataaatattgcaaatttcattttaatacgttacgtggctgtgagcgaccactgtgcaagtttgctcatgtgcctgaacaaggggatgaaaaggtttgcatggatgtgtttaagaaatatataaatatcaatgaactgtgtttgctacagcgtgcagtaaacgtatttatggagtactacagaaagtttcccccaggtatatactttgatttacaagtgctaaatgatcttctaaattctttactcaaacattgtttattgaaagaagtatttcagatagtgaacctcagcataatggttaaaatgctgcttgttgaagctgggatggtgcttgacccagagcactttaactatattgttaagctcttatatcaagtacaagcttccaaacaagaaataactgcagttctggaaatgaaatccaggtgagaaaaatcattattatttatgccaaaatatatgtgtcttggtggggacttataaaagctgaaggaaaagttctaataactgtttgtatgcccatttagatagttacctgtcataaacccttctcccgtctcttggctatgccctactttagtcaagctgcctctggctagcctcacctcatttttctcagtacttcatttcctctcaacgtcctgctcattcagtgtaaaaagagtatcttttctgatgaacatcgatgcaaaaatcctcaataaaatactggcaacccaaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatcc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]