2024-04-27 13:09:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_031663426 6296 bp mRNA linear PRI 20-NOV-2019 DEFINITION PREDICTED: Papio anubis testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X1, mRNA. ACCESSION XM_031663426 VERSION XM_031663426.1 DBLINK BioProject: PRJNA576697 KEYWORDS RefSeq. SOURCE Papio anubis (olive baboon) ORGANISM Papio anubis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044977.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Papio anubis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6296 /organism="Papio anubis" /mol_type="mRNA" /isolate="15944" /db_xref="taxon:9555" /chromosome="2" /sex="male" /tissue_type="whole blood" gene 1..6296 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:101026148" CDS 2165..5953 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1 isoform X1" /protein_id="XP_031519286.1" /db_xref="GeneID:101026148" /translation="
MRRPPPLGPTTASGPEGNVRNLRKRQAPGSGAAGGCGPEAGGRGENRQKRRMVARATPGRGEVKSDKSVAASGAGKAARRRMEGRRGQVSPSDRRGLEAAKEAELPLQTERHTKEKRKVTEASSDDPQPGFDLVRKESLTSLESFQTVECLRSLGKEGIVEGIKRRIRNKKLKSLENPPLKITENEATQNIKVEFQDELYKNTLKYSCNILSPELENNSVFKLRDCSCFPHSKDCNDENNLPYEPDGGCMHVAENFSQKENFRSLAEKSDTNNIPQLLQTEENVMGVNKLLPEESDLYQSKINGLLPCLQREKNKYSIEESSVGRKPRKRMKLSEKADETVTQMNFSNEYNKSELMLQENQMIADGKEAETKSPLNVLRQVSHNTVSLMDHLLSVPEMVEKETSSEHHVNAMFQKTIEPLLKEETENASEPLGYENMALKEDFKSKSFIGKSPEYHIERRSSREDLRSDSEELKLSCQRTIPMTGKRTWPYYSCARISAWCWKKASLPESSYFLPGSQKSCKKVDVPKHQINKTHLTDSKLLLQSSLTETNTESSSKEKLDSNLNCLFSVSAVEHTLMVIKEPIIKDDKKIKSEELSRSGSEVISNTTEDTQLTSDTQSLTGNKKRDRGNLTKLNLTAASKDGQEANNSTGKTIHRKACVAKQTFVVPDLVKILNTGRLTNFKIPLLKNKTKKRKEVNAKSSEREAYSPLELLDNLSGADTRHNRSKENVSMTMLGPQTLSIQNNVTPVQASSDSFYNKNSCSISPSFTKHGNSSKLSSHFSEPGNIVSNKEVASLTVENNAFSCDPGYVEKSPSFCCNKQETFRPVSSEVRGRKITKNFSEVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGDLSFTSEVPRISQDPSVPGEHQSTDSKYVETPVKKEPSDDLSRELPVLDCGLIKPDICASNSAASEIKHDPKDANTSLGEVANETSENETLGDFSEQIKGSDLDEKHRFTDKVITKEEKENIYEVRKSKDSRNADIMVGECQFAAPVPKPLCLLVPPLNLSGHQEDTILNTWMNDFRFLGKHSVLKLQNPETCEIFKREKNVGVFQKSLGLMIPYKYCKFHFNTLRGCERPLCKFAHVPEQGDEKVCMDVFKKYININELCLLQRAVNVFMEYYRKFPPGIYFDLQVLNDLLNSLLKHCLLKEVFQIVNLSIMVKMLPSLKILLNIFEHVATMKLRNALPALIDIFCKLVEAGMVLDPEHFNYIVKLLYQVQASKQEITAVLEMKSR"
misc_feature <2330..>2608 /gene="TOPAZ1" /note="Domain of unknown function (DUF3827); Region: DUF3827; pfam12877" /db_xref="CDD:432847" ORIGIN
ctcagtgtgtgtgtgtgctgaagtttttacttaacaaatctatttaatgtttataatcaactaggcattattcttactgctttacaaatattggcacatttaattctcatgagaactctgaggagatactatttcattttacagatgaggaaactgatatataaagtgaatcataaagtgactgttgaatgagcctgaaatgcttatgataacttgttataaattctgctagtcttaaactgattttccttttaccaagggtatttacaaggagaaagaaacaagaaaaatttctgtatcttttacacctcttttacttaaattccattttataaaagctcctcagaatactcgacctgagcccctcatccaaactgccatattagtcatactccatgcatcatacctaccattctttaatgctttgtattcaaattcgccaggtccttctttaaacacacagaaagcaaagattaatggaaggtatctgcactcagatggaaggaagctactaagggagacacacaaataaatagttgaactgtgtgtttgcagacaggaggaaacactttacccctcaaagtgcaagaacagtggcaggaaagtttccttgatgggtgatccttgcactcaatcttgaaggggaaatatgtagttcaccaggcagacaagcaaaggaagactttctaggactgtcaagtacagaagcacaagcatgacaaaagtatatgaaatctggggaacttcggtagtagtccaacgtggcttacgggcaggctatgtgtggtgatgagataattttcaaaaaagagaaaataatggctgtcatagatgaacatgtattaaagattatattctctcatcaggcagattttataaacattagttcaaaggataagtccaaacaacaaacattctcgaccagaaatgaaatgaatgtgaaaaaggaggcaaaactggcttcttccacagtgaaaatgggaagtcaattaaacttctattggacagaatttggatgtctatagaccattattttgtgttgctattgcttatctataatttacacagtcataaaataactgccatagaatcagaatcaactaattcggaagggtgacttctatgtagttttccatcaaagcacaacttttaccctgcagtggcagtaagagaaaaccaggtaaattttcagaggctacatcagatagggttgcagataccacactagagtttgatttctgttagttttagtctttgagcaaaaacagttcatgaagggtcaaactaagaagtgctaggatcccccttcataggagaggcatggcctggcaaggaggtggaaatttgactggaatagctcaaggatggattcagaggcttgatgcagtaggtcagtcaagaaagtctgagggccagagccacggtaatggcaagtgggagagtggctgacaaacaaaatacagtcaagcagatttagtgaaagtggatgtgagggatgaagtagaaagaaggttgtctctgctggtttctaggtttctggcttaaacaattaggcgcatggtggcacatccacctatgtgaaaggagcaagcttgtgagaatcgatgagctggtttgcccacctgagtgtgaggtgcctgtggaatatccgggtgaatatatcaggaaggcttttagacaggggcttctgggagacttggtgtggagttagaagccactggctgacagtggcctttgcgagcagccaatgagtgaggagcagcacctgggagaatgagccctgaacggttccaggaagctcggcctagtggaagggacaacggaggtctgtgatgtgatgagccccactaccgtcccttgcaattaaatcaggcgcggccactgccttcctccgggctccgcgagaggccctccggaaagacgctggcacggaactcgcgactctcctgcccgttggatcccgaagcaccagtcggagccccagacactaggccctacttccgcttacgcgccccacttccgcttccggccctgggctgtggtgactggcggtgtggggtgggtcagagggcaataggtgcctgcccgggggagcggcctttgcgccgcggtgggttcctgcgagctggtgcagagggaccccggcgggccggccccggggcacatgcgacgacctccgcccctgggcccaacgacggcctcagggcctgaaggcaatgtgcgaaacctgcgaaagcggcaggcgccagggtcaggcgccgcgggaggctgcggccctgaggctggggggcgcggggagaataggcaaaagaggagaatggtggcccgggccacccctgggagaggcgaggtgaaaagtgacaagtcggttgcggcatcaggggctggaaaggccgcaaggcgtcggatggaggggcgcaggggccaggtgagcccgtcagaccggcgaggcctagaagcagcaaaggaggctgaactccccttgcaaacggaaagacacaccaaggaaaaaagaaaagttactgaagcctcaagtgatgatccacagccagggtttgacctggtaagaaaggaatcattaaccagtttggaatctttccaaacagtggagtgcttgcggtctttgggtaaggaaggtatagtagaaggtattaaaagaagaattcgaaataaaaaactgaaaagcttagaaaacccacctctcaaaataaccgaaaatgaggctacacaaaatattaaggttgaattccaagatgaactgtacaagaatactctaaaatattcttgtaacatcttgtcacctgaactagaaaataattccgtttttaaattacgtgattgcagttgttttccccattccaaggattgtaatgatgaaaacaacctgccatatgagcctgatggtggatgtatgcatgtagcagaaaatttctcacagaaagaaaactttagaagtcttgcagaaaagagtgacacaaataatattcctcaactcttacaaactgaagaaaatgtaatgggagtaaataagttactaccagaagagagtgatttataccaaagtaaaatcaatggcttgcttccctgccttcaacgtgaaaaaaataaatattcaatagaggagagcagtgttgggcgaaaacccaggaaaaggatgaagttgtctgaaaaagcagatgaaacagttactcagatgaacttctctaatgagtataacaagtctgagttgatgttgcaagaaaatcaaatgattgctgatggtaaagaagcagagactaaaagtcctttaaatgttttgagacaagtaagccataatacagtctctttgatggatcatttattaagtgtcccagaaatggtagaaaaagaaacaagttctgaacatcatgtaaatgctatgtttcagaaaaccatcgaaccacttttgaaagaagaaacagagaatgcttcagagcccttaggatatgaaaacatggcgctgaaagaggattttaaatcgaaaagcttcatagggaaatcacctgagtaccatattgaaaggagatcttcacgggaagatttaagaagtgactctgaagaactgaagttaagctgtcagagaacaatacctatgactggtaaaagaacttggccctattattcatgtgctagaatatctgcctggtgttggaaaaaggcttccttgccagaatcaagttactttcttcctgggtctcagaaaagttgtaagaaagttgatgtccctaaacaccaaataaacaagacccacttaaccgactccaaattattattacaaagttccttaacagaaacaaacactgaatcttcaagtaaagaaaaattagattctaatttgaattgtttgttttcagtttctgcagtagaacatactttaatggttataaaggaacctataatcaaggatgataaaaagataaaatcagaggaactgagcagaagtgggtcagaggtaatttctaacactactgaagatactcaattaaccagtgatactcaaagcttaacaggaaataaaaaaagagatagaggaaatttaacaaaacttaatttgacagcagcttccaaagatggtcaggaagcaaataactctacaggcaaaactattcatcgaaaagcatgtgttgctaaacaaacatttgtagttccagacttggttaaaatattgaacacaggacgactgactaattttaaaattcctttacttaagaataaaacaaaaaaaagaaaagaagtaaatgccaagtcatcagagagagaagcttacagtcctctagaacttctggacaatttatctggagcagatacgagacacaataggagtaaagaaaatgtctccatgacgatgttaggacctcaaactttgagcatacaaaataatgtaactccagtgcaagctagttctgactcattctacaataagaattcctgtagtatttctccaagctttacaaagcatggtaacagtagcaaactatctagtcacttctctgaaccaggcaatattgtttctaataaagaagttgcttctctcacagttgaaaataatgctttttcttgtgatcctgggtatgtagagaaaagtccttccttctgctgtaataaacaagaaacattccgaccagtttccagtgaagttaggggtagaaaaataactaagaatttttcagaagtaggatttccagatattcttaaagcatatgaagatgacgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggacctctcatttacttcagaggtccccaggataagccaggatcccagtgttcctggagagcaccaatcaacagactccaagtatgtggaaactccagtaaaaaaagaaccaagtgatgacttaagtagagaacttcctgtactggactgtggactgataaagccagacatctgtgcttccaactcagcagcaagtgaaataaaacatgatcccaaagatgcaaacacttccttaggagaagttgctaatgagacctctgaaaatgaaacactgggagacttcagtgaacaaataaaaggttcagacttggatgaaaagcatagatttacagacaaagtgattaccaaagaagaaaaagaaaatatttatgaagttcgcaaaagcaaagattctagaaatgccgacattatggttggcgaatgtcagtttgcagcaccagtcccgaaacctctgtgcttattagtacctcctttgaatctaagtggtcatcaagaagacacaatactgaatacctggatgaatgatttcagatttctgggaaaacattctgtcctaaagctgcagaatcctgaaacttgtgaaatatttaagagggaaaaaaatgtgggggtgttccagaagtccctagggttgatgataccctataaatattgcaaatttcattttaatacgttacgtggctgtgagcgaccactgtgcaagtttgctcatgtgcctgaacaaggggatgaaaaggtttgcatggatgtgtttaagaaatatataaatatcaatgaactgtgtttgctacagcgtgcagtaaacgtatttatggagtactacagaaagtttcccccaggtatatactttgatttacaagtgctaaatgatcttctaaattctttactcaaacattgtttattgaaagaagtatttcagatagtgaacctcagcataatggttaaaatgctgccttctctgaaaatattactaaacatatttgagcatgtggcaactatgaaattaaggaatgctctacctgctttaattgatatattttgcaagcttgttgaagctgggatggtgcttgacccagagcactttaactatattgttaagctcttatatcaagtacaagcttccaaacaagaaataactgcagttctggaaatgaaatccaggtgagaaaaatcattattatttatgccaaaatatatgtgtcttggtggggacttataaaagctgaaggaaaagttctaataactgtttgtatgcccatttagatagttacctgtcataaacccttctcccgtctcttggctatgccctactttagtcaagctgcctctggctagcctcacctcatttttctcagtacttcatttcctctcaacgtcctgctcattcagtgtaaaaagagtatcttttctgatgaacatcgatgcaaaaatcctcaataaaatactggcaacccaaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatcc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]