2024-04-26 17:40:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_031344571 4400 bp mRNA linear ROD 21-OCT-2019 DEFINITION PREDICTED: Mastomys coucha testis and ovary specific PAZ domain containing 1 (Topaz1), transcript variant X4, mRNA. ACCESSION XM_031344571 VERSION XM_031344571.1 DBLINK BioProject: PRJNA578167 KEYWORDS RefSeq. SOURCE Mastomys coucha (southern multimammate mouse) ORGANISM Mastomys coucha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022196906.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mastomys coucha Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4400 /organism="Mastomys coucha" /mol_type="mRNA" /isolate="ucsf_1" /db_xref="taxon:35658" /chromosome="Unknown" /sex="male" /tissue_type="liver" /dev_stage="adult" gene 1..4400 /gene="Topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:116072959" CDS 164..4198 /gene="Topaz1" /codon_start=1 /product="protein TOPAZ1 isoform X3" /protein_id="XP_031200431.1" /db_xref="GeneID:116072959" /translation="
MRPPATPPGPTTVTGRKGTSRGLRKRGLPRMPEPGERGGCSLEARGREEEEEEESRQKRRMVAQASGREETEGDKLAKENGKITEAPSDDPQPGTDLVRKTSITSLESLQTVECSEFQNTAFLQSLAKEELGEGIKRRIRIKKCKSLENPPLNITKSEATQNIKVEFQDKLFKNTPKCSCNSLSPGIEKNCSFESHDYSFLHSEGCNNENNFEDGPHGVCLHTAENSLKLKKENLRNLAEKDDTKTTTKLLKTEKSVIASKLLLEESHLCQNNNNSLSSCLQSEKNKYSVEENNTVRKHRKKMKSEKEEKIIDLTLSNVFNSSELVLQENQMGMEGKETETLESKKNFLKALRKVNHNILPPVDHLCLPETVGKTSSRHHINAVLQKTLEPSLKEDIKNASESLGCKSMEPEEYFKSMISSTVKSPSDSHHMGKRSPRGDLRSETEESKVSCRRIIPMTGKRVWPFYSCARISAQCWKKTSLSDLNYSLPGSLENVRQHDSIIHQMNQTHLSDSKLLQPSLIERTTESSRKEMYDSDLSCLSSVSSEEPTLMESIPHDKKTKVEEPSRNGAEVVSNATEDTQLSNITQSLTGNKKRKGNLSKLNLTVASQESQEANNCANKTVHRKACITKQTLVAPDLVKILNTGRLTNFKIPLLKNKTGKRGEVSARSSEREAYSPLELLDSLSGVEAKQNRNKENICTTSGAQSFNTHSVAPGQTSSHSFYNKNSCTSPSFTKKGYDNKACNHISEPGNIISNKESISIKIENNAFSCELGYIEQSSFCSRKQEAFVPISSEISGRKMTKSISELKLGFPDILKAYEDDVLLIDVIQDDPELFGISSEGDLSFASEVPKISQEPRVSEEHPSADFKHIHLPGKKEPGGLSKEVALLDPGLLKLEICPSMSAAKEPPHDPKVAPISLEATEETVVSENLEDLREQVRASDSDTKCISSDKATVTEEKESTREVCKSKDSRNVEAVATECPLTTLGPNPLCSSAVPVNLSSHQDVVPMPWINDFRFLGRHSALQLQNPEICETFKREKNMGVFQKPLGLAIPHRYCKLHFNTLRGCERAQCKFVHVPEQGDEKICMDVFKKYISVNEQRLLHRAAYIFLEYYRKFPPGIHFSLQVLNDLLISLLKHCLLKEVFQVVQLSIMAKMLPALKILLKIFEYVATMKLRNAVPALIEIFCKFIEAGMVPDPEHLNYIVKLLHQAQASQQEISAVLEAKSRLRGRQLKPNWKCDLDSALSEVETCKEKGDWTKLGSLYITIKMSCEEFADFQRFCACVAETLTEDYKEERPGVPFCEFAETVSKDPQYSEVDKTLLGRIGISAVYFYHRLLLWPKISLK"
misc_feature 3902..>4183 /gene="Topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
cccagcccgcccacttccgcttcctgttgtttcgggtacagggtccgcagccaggtgcggccaggccaggccacggtgggcagtagcctgtgtcctgcagggggagcagcggctccggggcgtctaggcttctcagagaggctgagtgggcggccgtgggcggatgcggccgccagcgacgcctccgggccccaccacggtgacagggcgcaaaggcacctcccgaggcctgaggaagcgaggccttccgcggatgccagagccaggcgagcggggaggctgtagcctggaggccagggggcgcgaggaggaggaagaggaggagagcaggcagaagcggaggatggtggcccaggcttctgggagagaagagacagaaggtgacaagttggccaaagagaatggaaaaattactgaagccccaagtgatgatccacaaccagggactgacctggtaagaaagacatcaataaccagtttggaatctttgcaaacagtggagtgcagtgaatttcaaaatacagctttcttacagtctttggctaaggaagaattgggagaaggtattaaaagaagaattcgaattaaaaaatgtaaaagtttagaaaatccacctctcaacataactaaaagtgaggcaacacaaaatattaaggttgaattccaagataaactgttcaagaatacgccaaaatgttcttgtaacagcttatcacccggaatagaaaaaaattgcagttttgaatcacatgactacagtttcctacattctgaagggtgtaataatgaaaacaactttgaggatggaccccatggtgtatgtctacacacagcagagaactctttgaagttaaagaaagaaaaccttaggaaccttgcagagaaagatgacacaaaaactactactaagctcttaaaaactgaaaaaagtgtaatagccagtaagttactgcttgaagaaagtcatttatgccaaaataacaacaatagcttgagttcttgccttcaaagtgaaaaaaacaaatattcagtagaggagaacaacacagtgagaaaacacaggaaaaagatgaagtctgaaaaagaggaaaaaattattgatcttactttgtctaatgtgtttaacagttctgagttggtgttacaagaaaaccaaatgggtatggaagggaaagaaacagagaccttagaatctaaaaaaaattttctaaaagctttaagaaaagtaaaccataatatactccctcccgtggaccatttgtgtctcccagaaacagtggggaaaacaagttctagacatcacataaatgctgtgcttcagaaaactcttgaaccaagtttgaaagaggatataaagaatgcttcagagtccttaggatgcaaaagtatggagccagaagaatattttaaatcgatgataagctctacagtgaaatcacctagtgatagccatcatatgggaaagagatctccacggggagatttgagaagtgaaactgaagagtcaaaggttagctgtcgcagaataataccaatgactggtaaaagagtttggcctttttattcttgtgctagaatatctgcccagtgttggaaaaagacttccttgtcagatttaaattactcgcttccggggtcactggaaaatgttaggcaacatgattctataatacaccaaatgaaccagactcacttatctgactccaaactgttacaaccatccttaatagaaagaacaactgagtcttcgagaaaagaaatgtatgattctgatttaagttgtttgtcttcagtttcttcagaagaacctactttgatggaaagtataccccatgataaaaagacaaaggtagaggaacccagcagaaatggggcagaggtagtttctaatgctactgaagacacccagttaagtaatataactcaaagcttaacgggaaataagaaaaggaaagggaatttatcaaaacttaatttaacagtggcatcccaagagagccaggaagcaaataactgtgcaaataaaactgttcatcgaaaagcttgtattactaagcaaacacttgtggctccggacttggttaaaatattaaacacaggacggctgactaattttaaaatccctttactaaagaacaagacaggaaaaagaggagaagtaagtgccaggtcatctgagagagaagcttatagtcccctagagctacttgacagtttatctggagtggaggcaaaacaaaataggaataaggaaaatatctgtacaacttcaggagcacagtctttcaatacacatagtgtagcaccagggcaaactagttctcattcattctacaataagaattcctgcacttctccgagctttacaaagaaaggttatgataataaagcatgtaatcacatctctgaaccaggaaatattatttcaaataaggagtctatttctattaaaattgaaaataatgctttttcttgtgaacttgggtatatcgagcaaagttccttctgctctaggaaacaagaagcatttgtgccaatttcctctgaaattagtggtagaaaaatgactaaaagcatttcagaactcaaattggggtttccagatattcttaaagcatatgaagatgatgtactcttgattgatgtaattcaagatgacccagagctctttggaatctccagtgagggggatctctcctttgcttcagaagtccccaagataagccaggagcccagagtgtctgaagagcacccgtcagcagactttaagcacatacatcttccagggaaaaaagaaccaggtggtttgagtaaagaagttgccttgctggaccctggattgctgaaactggagatctgtccttcgatgtcagcagcaaaggagcctccacatgaccctaaagtggcacccatctccttagaagctactgaggagactgttgtaagtgaaaacctagaagacctcagagaacaagtgcgagcgtcagactcagacacaaagtgcataagttcagacaaggcgactgttacagaagaaaaagagagtactcgtgaagtttgcaaaagcaaagattctagaaatgtggaggctgtggctactgagtgtccattaacaacactgggtcccaaccctctgtgctcatcagcagttcctgtgaatctaagtagtcatcaagatgtagtgccaatgccctggataaacgatttcagatttctaggaagacattctgccctacaactgcagaatcctgaaatttgtgaaacatttaaaagagaaaaaaacatgggggtgttccagaagcccttagggttggcgataccccacagatactgcaaacttcattttaacacattgcgtggctgtgagcgagcacagtgcaagtttgtccatgtgcctgagcagggggatgagaagatctgcatggatgtgtttaagaaatacataagtgtcaatgagcaacgtttgctgcatcgagcagcgtacatatttctggagtactacagaaagtttcccccagggatacacttcagtttacaagtgctaaatgaccttttgatttctttactcaagcattgtttattgaaagaagtctttcaggtagtgcagctcagcataatggctaaaatgctgcctgctctgaaaatattactaaaaatatttgagtacgtggcaactatgaagttaaggaatgctgtacctgctttaattgagattttttgcaagttcattgaagcagggatggtacctgacccagagcacttgaactatattgttaagcttttgcaccaagcacaggcatcccaacaagaaatatctgcagttctggaagccaaatccaggttgcgagggaggcagctgaaaccgaactggaagtgtgacttagactcagccttgagtgaagtggagacttgtaaagaaaaaggtgactggaccaaattgggaagcctgtacattaccataaaaatgagctgtgaagaatttgcagatttccagagattctgtgcttgtgttgctgaaacactcacagaagattataaagaagaaaggccaggggttcctttttgtgaatttgctgaaacagttagcaaagatccacagtacagtgaggtggataagactttgttgggaaggatcggaataagtgctgtgtacttctatcacagactgttgctgtggcccaagatttccctgaagtgatcaattgaattgtagactcaataaagtccaaatagagggcatgaaaatccaatgtgaagggaagagctgaggatggaatcaacagaatgtaagattaagtatgatcactgttaagttttaaagcttagattctgttaactctggttatttcagaagtgaatggctgtgtggtaacatttaggcataggttcacttgtatata
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]