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2024-03-29 19:16:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_031344570            5194 bp    mRNA    linear   ROD 21-OCT-2019
DEFINITION  PREDICTED: Mastomys coucha testis and ovary specific PAZ domain
            containing 1 (Topaz1), transcript variant X2, mRNA.
ACCESSION   XM_031344570
VERSION     XM_031344570.1
DBLINK      BioProject: PRJNA578167
KEYWORDS    RefSeq.
SOURCE      Mastomys coucha (southern multimammate mouse)
  ORGANISM  Mastomys coucha
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mastomys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022196906.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mastomys coucha Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5194
                     /organism="Mastomys coucha"
                     /mol_type="mRNA"
                     /isolate="ucsf_1"
                     /db_xref="taxon:35658"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="liver"
                     /dev_stage="adult"
     gene            1..5194
                     /gene="Topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116072959"
     CDS             164..5110
                     /gene="Topaz1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X2"
                     /protein_id="XP_031200430.1"
                     /db_xref="GeneID:116072959"
                     /translation="
MRPPATPPGPTTVTGRKGTSRGLRKRGLPRMPEPGERGGCSLEARGREEEEEEESRQKRRMVAQASGREETEAKENGKITEAPSDDPQPGTDLVRKTSITSLESLQTVECSEFQNTAFLQSLAKEELGEGIKRRIRIKKCKSLENPPLNITKSEATQNIKVEFQDKLFKNTPKCSCNSLSPGIEKNCSFESHDYSFLHSEGCNNENNFEDGPHGVCLHTAENSLKLKKENLRNLAEKDDTKTTTKLLKTEKSVIASKLLLEESHLCQNNNNSLSSCLQSEKNKYSVEENNTVRKHRKKMKSEKEEKIIDLTLSNVFNSSELVLQENQMGMEGKETETLESKKNFLKALRKVNHNILPPVDHLCLPETVGKTSSRHHINAVLQKTLEPSLKEDIKNASESLGCKSMEPEEYFKSMISSTVKSPSDSHHMGKRSPRGDLRSETEESKVSCRRIIPMTGKRVWPFYSCARISAQCWKKTSLSDLNYSLPGSLENVRQHDSIIHQMNQTHLSDSKLLQPSLIERTTESSRKEMYDSDLSCLSSVSSEEPTLMESIPHDKKTKVEEPSRNGAEVVSNATEDTQLSNITQSLTGNKKRKGNLSKLNLTVASQESQEANNCANKTVHRKACITKQTLVAPDLVKILNTGRLTNFKIPLLKNKTGKRGEVSARSSEREAYSPLELLDSLSGVEAKQNRNKENICTTSGAQSFNTHSVAPGQTSSHSFYNKNSCTSPSFTKKGYDNKACNHISEPGNIISNKESISIKIENNAFSCELGYIEQSSFCSRKQEAFVPISSEISGRKMTKSISELKLGFPDILKAYEDDVLLIDVIQDDPELFGISSEGDLSFASEVPKISQEPRVSEEHPSADFKHIHLPGKKEPGGLSKEVALLDPGLLKLEICPSMSAAKEPPHDPKVAPISLEATEETVVSENLEDLREQVRASDSDTKCISSDKATVTEEKESTREVCKSKDSRNVEAVATECPLTTLGPNPLCSSAVPVNLSSHQDVVPMPWINDFRFLGRHSALQLQNPEICETFKREKNMGVFQKPLGLAIPHRYCKLHFNTLRGCERAQCKFVHVPEQGDEKICMDVFKKYISVNEQRLLHRAAYIFLEYYRKFPPGIHFSLQVLNDLLISLLKHCLLKEVFQVVQLSIMAKMLPALKILLKIFEYVATMKLRNAVPALIEIFCKFIEAGMVPDPEHLNYIVKLLHQAQASQQEISAVLEAKSRLRGRQLKPNWKCDLDSALSEVETCKEKGDWTKLGSLYITIKMSCEEFADFQRFCACVAETLTEDYKEERPGVPFCEFAETVSKDPQYSEVDKTLLGRIGISAVYFYHRLLLWPKGRKVLDILYELKINFTSLKGLTGPEKVAPRCQIVNVAAEIFIKSGSLDGAIWVLRESEWIINTPLWPCDRMDVLNRHNLLCTIAHEILGKNLYKQTFEVLRNLPSFQNSQETMGVSQSSLLFNELLDACIESNSLGISSSVAEFMVAKSIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLVPSYLSEIEMLLAIEIFLVSNASSIQSLGAPTQVLQIVLKRCEESKSRSKDDYQAAVERLIMAARISDPKLFIKHMTVNINKEQVYSLEHCSALKWLKENMKWAGKVWLFTNH"
     misc_feature    3890..4417
                     /gene="Topaz1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      
cccagcccgcccacttccgcttcctgttgtttcgggtacagggtccgcagccaggtgcggccaggccaggccacggtgggcagtagcctgtgtcctgcagggggagcagcggctccggggcgtctaggcttctcagagaggctgagtgggcggccgtgggcggatgcggccgccagcgacgcctccgggccccaccacggtgacagggcgcaaaggcacctcccgaggcctgaggaagcgaggccttccgcggatgccagagccaggcgagcggggaggctgtagcctggaggccagggggcgcgaggaggaggaagaggaggagagcaggcagaagcggaggatggtggcccaggcttctgggagagaagagacagaagccaaagagaatggaaaaattactgaagccccaagtgatgatccacaaccagggactgacctggtaagaaagacatcaataaccagtttggaatctttgcaaacagtggagtgcagtgaatttcaaaatacagctttcttacagtctttggctaaggaagaattgggagaaggtattaaaagaagaattcgaattaaaaaatgtaaaagtttagaaaatccacctctcaacataactaaaagtgaggcaacacaaaatattaaggttgaattccaagataaactgttcaagaatacgccaaaatgttcttgtaacagcttatcacccggaatagaaaaaaattgcagttttgaatcacatgactacagtttcctacattctgaagggtgtaataatgaaaacaactttgaggatggaccccatggtgtatgtctacacacagcagagaactctttgaagttaaagaaagaaaaccttaggaaccttgcagagaaagatgacacaaaaactactactaagctcttaaaaactgaaaaaagtgtaatagccagtaagttactgcttgaagaaagtcatttatgccaaaataacaacaatagcttgagttcttgccttcaaagtgaaaaaaacaaatattcagtagaggagaacaacacagtgagaaaacacaggaaaaagatgaagtctgaaaaagaggaaaaaattattgatcttactttgtctaatgtgtttaacagttctgagttggtgttacaagaaaaccaaatgggtatggaagggaaagaaacagagaccttagaatctaaaaaaaattttctaaaagctttaagaaaagtaaaccataatatactccctcccgtggaccatttgtgtctcccagaaacagtggggaaaacaagttctagacatcacataaatgctgtgcttcagaaaactcttgaaccaagtttgaaagaggatataaagaatgcttcagagtccttaggatgcaaaagtatggagccagaagaatattttaaatcgatgataagctctacagtgaaatcacctagtgatagccatcatatgggaaagagatctccacggggagatttgagaagtgaaactgaagagtcaaaggttagctgtcgcagaataataccaatgactggtaaaagagtttggcctttttattcttgtgctagaatatctgcccagtgttggaaaaagacttccttgtcagatttaaattactcgcttccggggtcactggaaaatgttaggcaacatgattctataatacaccaaatgaaccagactcacttatctgactccaaactgttacaaccatccttaatagaaagaacaactgagtcttcgagaaaagaaatgtatgattctgatttaagttgtttgtcttcagtttcttcagaagaacctactttgatggaaagtataccccatgataaaaagacaaaggtagaggaacccagcagaaatggggcagaggtagtttctaatgctactgaagacacccagttaagtaatataactcaaagcttaacgggaaataagaaaaggaaagggaatttatcaaaacttaatttaacagtggcatcccaagagagccaggaagcaaataactgtgcaaataaaactgttcatcgaaaagcttgtattactaagcaaacacttgtggctccggacttggttaaaatattaaacacaggacggctgactaattttaaaatccctttactaaagaacaagacaggaaaaagaggagaagtaagtgccaggtcatctgagagagaagcttatagtcccctagagctacttgacagtttatctggagtggaggcaaaacaaaataggaataaggaaaatatctgtacaacttcaggagcacagtctttcaatacacatagtgtagcaccagggcaaactagttctcattcattctacaataagaattcctgcacttctccgagctttacaaagaaaggttatgataataaagcatgtaatcacatctctgaaccaggaaatattatttcaaataaggagtctatttctattaaaattgaaaataatgctttttcttgtgaacttgggtatatcgagcaaagttccttctgctctaggaaacaagaagcatttgtgccaatttcctctgaaattagtggtagaaaaatgactaaaagcatttcagaactcaaattggggtttccagatattcttaaagcatatgaagatgatgtactcttgattgatgtaattcaagatgacccagagctctttggaatctccagtgagggggatctctcctttgcttcagaagtccccaagataagccaggagcccagagtgtctgaagagcacccgtcagcagactttaagcacatacatcttccagggaaaaaagaaccaggtggtttgagtaaagaagttgccttgctggaccctggattgctgaaactggagatctgtccttcgatgtcagcagcaaaggagcctccacatgaccctaaagtggcacccatctccttagaagctactgaggagactgttgtaagtgaaaacctagaagacctcagagaacaagtgcgagcgtcagactcagacacaaagtgcataagttcagacaaggcgactgttacagaagaaaaagagagtactcgtgaagtttgcaaaagcaaagattctagaaatgtggaggctgtggctactgagtgtccattaacaacactgggtcccaaccctctgtgctcatcagcagttcctgtgaatctaagtagtcatcaagatgtagtgccaatgccctggataaacgatttcagatttctaggaagacattctgccctacaactgcagaatcctgaaatttgtgaaacatttaaaagagaaaaaaacatgggggtgttccagaagcccttagggttggcgataccccacagatactgcaaacttcattttaacacattgcgtggctgtgagcgagcacagtgcaagtttgtccatgtgcctgagcagggggatgagaagatctgcatggatgtgtttaagaaatacataagtgtcaatgagcaacgtttgctgcatcgagcagcgtacatatttctggagtactacagaaagtttcccccagggatacacttcagtttacaagtgctaaatgaccttttgatttctttactcaagcattgtttattgaaagaagtctttcaggtagtgcagctcagcataatggctaaaatgctgcctgctctgaaaatattactaaaaatatttgagtacgtggcaactatgaagttaaggaatgctgtacctgctttaattgagattttttgcaagttcattgaagcagggatggtacctgacccagagcacttgaactatattgttaagcttttgcaccaagcacaggcatcccaacaagaaatatctgcagttctggaagccaaatccaggttgcgagggaggcagctgaaaccgaactggaagtgtgacttagactcagccttgagtgaagtggagacttgtaaagaaaaaggtgactggaccaaattgggaagcctgtacattaccataaaaatgagctgtgaagaatttgcagatttccagagattctgtgcttgtgttgctgaaacactcacagaagattataaagaagaaaggccaggggttcctttttgtgaatttgctgaaacagttagcaaagatccacagtacagtgaggtggataagactttgttgggaaggatcggaataagtgctgtgtacttctatcacagactgttgctgtggcccaagggcaggaaggtcttagatatactgtatgagctaaaaataaattttacaagtttaaaaggacttacaggacctgaaaaggtagcaccaagatgtcaaattgtaaatgttgcagcagagatttttatcaaaagtgggagcctagatggtgccatttgggtcctaagggaatcggaatggataatcaacacaccactttggccttgtgatagaatggatgtgcttaatcggcataatttgctctgtaccattgcacatgaaatcctaggcaagaatctttacaaacaaacatttgaggtcttgcggaatctaccaagctttcagaattctcaagaaacaatgggggtttcccagtctagccttctttttaatgaacttctggatgcctgtatagaaagtaatagtcttggcatatcatcttctgtagcagagttcatggttgcaaagagcatccctattgacttttcctttctcaggagactgatcacttccttaggaagaagttgtttgtggctcaaagccagagcccactacaaaagtgctctttcactgggttgctacccaccattagagggaaacttataccggaaacttctactggttccttcttatttatctgagattgaaatgcttttagctatcgaaatattcctggtgtctaatgctagtagtattcagagcctgggagctcccacacaggtactacagattgttttgaaaagatgtgaagaaagcaaatcccgaagcaaggatgactatcaagctgcagtagaaagattgatcatggctgctcgaatatcggaccccaagctgttcattaagcatatgacagtcaatattaacaaggaacaggtgtacagtctggagcactgctctgccttgaaatggctgaaagagaatatgaagtgggctgggaaggtttggcttttcaccaaccattagttagtaaagggttgttgttgggttttctttttaagttcaagtaatcattgttgaaaataaaataaaaataactcatcatatcca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]