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2024-03-29 01:48:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_030356989            3764 bp    mRNA    linear   VRT 12-AUG-2019
DEFINITION  PREDICTED: Gadus morhua NRDE-2, necessary for RNA interference,
            domain containing (nrde2), mRNA.
ACCESSION   XM_030356989
VERSION     XM_030356989.1
DBLINK      BioProject: PRJNA557709
KEYWORDS    RefSeq.
SOURCE      Gadus morhua (Atlantic cod)
  ORGANISM  Gadus morhua
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei;
            Gadidae; Gadus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044052.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gadus morhua Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3764
                     /organism="Gadus morhua"
                     /mol_type="mRNA"
                     /db_xref="taxon:8049"
                     /chromosome="5"
     gene            1..3764
                     /gene="nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 60 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:115544166"
     CDS             6..3626
                     /gene="nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog"
                     /protein_id="XP_030212849.1"
                     /db_xref="GeneID:115544166"
                     /translation="
MTPSSCDHNAVHNINNMALFPAFAEVTATNLDDSSKDWLTNKSFRADDALALNERALKASRSQNQDDSREVSSEEEEEKKTRGEEDDKPPKKKKKKKEKKKNKKKHKKRDRSSSVSSGSGSDTVYPSDLKREQEREREKPAPLASRFSWLDDVRSPTEQPFCVDNKPDQANWTYKSLYRGDVARYRRKGSSSLGLDPRFQAISWEESEQSAKKKKKADVKRRRADRYFSKDSQELLRAETPVPSLPRIGAGDELPRMIDFITLAGEGGLSRGETAGRVLTSPANPLGVYDAGTALWAQGKGKQEAPEGQSQATAQDQRVASLSEKTGDYNRRLREEPGDTQLWMEFIHYQDEQSETGFGGGGEPDSAERRRASYRGVVEKKLSVAERAVALNPSCVALQLERLRLCRELWEPAALAKEWKKLVFLHPNSPSLWREYLLFTQSHFSTFTVSRVNAAYGKCLSTLSAVQDGSMVSHLAIAGTEEEMLDLFIQQCHFLRQCGHSEKAVSLFQAMMDFTFFKPDTVRGLPTRQQVEFFEPFWDSGEARIGEVGARGWKAWMLQQERGGWLQPSAEDDEDEEEEEEELKDRDRPRWELWLNVESSREATHWLPWRPEKGQSVEDCEDPDRQVLFDDIGPSLIHLASPELQRRLLLSFLSFMGMPVDSVLLGAPCQSSLLMEDLTLLTQGNDPQRPLSGYDLQNTGVHTVGHMTTLQGSRKWAGLGKQGEEFLTNAFHLLLPQLAPPHRAALSLCWIRYEKLKVLRCLCGGSKKRLRSQGKSSKRVAKRLLKEPDNRSALALWREYGHLEWLLGNADDARKVFSAATAMGGAKGLGCPALCDLCLLWAQLECEEGGAGEGRKGGPGDATSAPAVGVLTRLAEGTPSAPGAAAPTPVAVLKARRTYEQALTDRLAALEKDLRKWGEGKKGDGPKLRGLVGCYALYQHLTVGVQATNAVYGQAREGTEGLHRALTLASDNHAGASGGPGAAGTEAGRLCAQRLAFECEALAVQHAALLRYHLSTSVFPLATLRHALTSSLSAWPQCASLWTVYLQVENRYHSAGRARRFFHSVTRGRKDIVPRLFAIVAEQQRKQLVDATQRFESHDGALPILPENGLGNRIRGLFGNALLSEMGAHCPLLWRMYMHFLVSEGKLDNAKAIFYKALQNVPWSKGLYMDAVQLFPGHLQEFVDLMTEKELRLRLPLEELDILLED"
     misc_feature    483..>743
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    990..1976
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
attggatgacgccgtcttcctgcgaccataacgctgttcataacatcaacaacatggctctgttcccagctttcgcagaagtcacggccacaaacctggatgattcttccaaagactggttgacaaataagagctttcgagctgatgatgcattggctctcaacgaacgggctttaaaggccagcagaagtcagaaccaagatgattcaagggaggtgagctctgaggaggaggaggagaagaagacgagaggggaggaggatgacaagcctcccaaaaagaagaaaaagaagaaggagaagaagaaaaataagaaaaaacataagaagagggacaggagctcttcagtcagtagcgggtcgggctctgacaccgtttatcccagtgacctcaagagggagcaggagagagaaagggaaaagcctgctccgctggccagtcgtttctcctggcttgatgacgtgcgttcccccactgagcagccgttctgcgttgacaataaaccagatcaagctaactggacctacaagtccctgtacaggggggacgtggccaggtacagacggaagggctcgtcctcgctgggcctggaccctcgctttcaggcgatttcttgggaggagtcggagcaaagtgccaaaaaaaagaagaaagccgacgtcaagaggagaagggcggaccgatacttttcaaaggatagtcaggagctgctgagagccgagacccctgtgccatcactgcccaggatcggagcaggcgatgagctgccccgaatgatcgactttattaccctggctggtgaaggaggattaagcagaggagagactgcgggtagggtgctgacgtcgccggcgaaccccctgggcgtgtacgacgccggcacggccctgtgggcccaggggaaggggaagcaggaggcccccgagggccagagccaggccacggcccaggaccagagggtggccagcctgtctgagaaaacaggggattacaacaggcgcctgagggaagaaccaggagacacacagctatggatggagttcatacactaccaggatgagcagagcgagacggggttcggcggcgggggcgagccggactcggcggagcgccggcgggcgtcgtaccgcggcgtggtggagaagaagctgagcgtggcggagcgggccgtggccctcaacccgtcctgcgtggccctgcagctggagcggctgcggctctgcagggagctgtgggagcccgccgccctggccaaggagtggaagaaactggtgttccttcaccccaacagcccctccttgtggcgggagtacctgctgttcacccagagtcacttcagcaccttcaccgtgtccagggtcaacgcggcctacgggaagtgtctgagcacgctcagtgcggtgcaagacggcagcatggtgtctcacctggccatagcaggaactgaggaggagatgttagacctgttcatccagcagtgtcacttcctgcgacagtgtggccactctgagaaggccgtgtcactcttccaggctatgatggacttcaccttcttcaagcctgatacggttcgaggattgcccaccaggcagcaggtggagttctttgagccgttctgggacagcggggaggccaggatcggtgaggtgggggcccgagggtggaaggcctggatgcttcaacaggagagagggggctggctccagcccagtgcagaggatgacgaagacgaggaagaggaggaggaggagctgaaggatcgggacagaccaagatgggagctctggctgaatgtggagtcttccagggaggcaactcattggctgccctggaggccagaaaagggccaatcagtggaggactgtgaagacccagacagacaggtgttgtttgacgacatcgggccctcgttgatccacctggcgtccccagagctccagcgccgtctgctcctctccttcctgtccttcatggggatgcctgtggactctgtgctcctgggcgccccctgtcagagcagcctcctgatggaggacctcactctgctcacacagggcaacgacccccagcgacctctgagcggctacgacctccagaacacgggagtccacacggtgggtcacatgacaacgctgcaggggtcaaggaagtgggcggggctcgggaagcaaggggaagagttcctcaccaacgccttccacttgctcctcccacaactggccccgccccaccgggcggccctgtcactctgctggatacgctatgagaaactcaaggtcctgcgctgtctctgcggtggcagcaagaagcgcctgcgctcccagggcaagagcagcaagcgcgtggccaagcggctgctcaaggagcccgacaaccgctccgccctggcgctgtggcgggagtacggccacctcgagtggctcctgggcaacgccgacgacgcccgcaaggtgttctcggccgccaccgccatgggaggagccaaggggctgggctgccccgccctctgcgacctctgcctgctgtgggcccagctggagtgtgaggaggggggcgccggggaggggaggaagggcggccccggggacgcgacctccgccccggccgtgggcgtcctcacccggctggcggaggggaccccctccgcccccggggccgcggcgcccaccccggtggcggtgctgaaggccaggaggacttatgagcaggccctgacggaccgtctggctgccctggagaaagacctccgcaagtggggagagggcaagaaaggagacggaccgaagctaagaggcctggtgggctgttacgccttgtaccagcatctgacggtcggcgtgcaggcgaccaacgcggtgtacggccaagctcgggagggaacggaggggctgcaccgggcgctgaccctggcctctgataaccacgccggcgccagcgggggtccgggcgccgccggcacagaggccggcagactctgcgcccagaggctggcgtttgagtgcgaggcgttggccgtccagcacgcggcgctgctcagataccacctcagcaccagcgtgtttcccctggccacgctgagacacgccctcacctcctcgctctccgcctggccccagtgcgcctccctctggaccgtttacttgcaggtggagaaccggtaccacagcgcaggacgggcccgccgcttctttcactcggtgacccggggacgcaaggacatcgtgccacgcctctttgctattgttgccgagcaacaaaggaagcagctggtggacgcgacccagcggtttgaatctcatgatggcgctctacccatcttgccggaaaatggccttggcaaccgtatccggggcctgtttggaaacgcccttcttagtgagatgggtgcccactgtcctctactctggcggatgtatatgcacttcctggtatcggagggtaagctggacaatgccaaagcgatcttctacaaggccttgcagaacgttccctggtctaagggtttgtacatggacgcagtgcagctattccccggacacctccaggagtttgtggacctcatgacggagaaggaactgcgtctcagactgcccctagaggagttggatatactacttgaagattgaatgaacaagcagacattcatgtgaacaaaatgttattcattcttagcctaaaaattatttgatgagaaaggtttttttcatgtatataggtacatcaaatatactttttgagaattggaataaaagtgttttttagaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]