2024-03-29 19:16:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030044390 3941 bp mRNA linear VRT 26-JUL-2019 DEFINITION PREDICTED: Myripristis murdjan NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_030044390 VERSION XM_030044390.1 DBLINK BioProject: PRJNA556033 KEYWORDS RefSeq. SOURCE Myripristis murdjan (pinecone soldierfish) ORGANISM Myripristis murdjan Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Holocentriformes; Holocentridae; Myripristis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044001.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Myripristis murdjan Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3941 /organism="Myripristis murdjan" /mol_type="mRNA" /db_xref="taxon:586833" /chromosome="22" gene 1..3941 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:115354163" CDS 63..3674 /gene="nrde2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_029900250.1" /db_xref="GeneID:115354163" /translation="
MALFPAFAGVTANKVDDTSKELDWLSNKSFQPDDAVFLHQRTLERTSKRQTEKESSLGKELSSEEEEEEEEGDVPPKKKKKKKEEKKRKKKKKKHKKRSGRSSDSSGSDSDTVYPSDLKKEQEKDRSQAAPLSSRFFWLDDLQSPTEQPFCLDRKPDPANWTYKSLYRADIARYRRKGSSSLGLDRHTQEVSWEESEPNKKNKGGDKKRAADRYFSSANRQLLRSEPTVPTLPRIPDCTDVTVPTSFLSLGDEQGKGEGETGQKVQTSSVNPLRVYDASTALWLQGKGLQDQTDVQDQQAGQSTAPLAGRTEEFNRRLREQPADTQLWIEFIRYQDEQCAASFGGEGEQQGDVAEHRKSSYRAILEKKLSIVERAVAANPCCIALHLERLRICQELWEPSVLAKEWKKLVFLHPNSAPLWREYLLFTQSYFSTFTVSKVNAAYGKCLSTLSAVRDGSMVSHPALPGTEEDMLDIFNQQCHFLRQCGHSEKAVSLFQALIDFTFYKPDSVRDLPTKQQVEFFEPFWDSGEARVGEAGARGWKAWMLQQERGGWLQPSADDDDEEEEEEEEVKDRSQPRWTIWLDVESSREAAHWLPWRPNKTKGQSEEDCDDPDRQVLFDDIGPSLICLSSPDLKLRLLLRFLSFLGLPVDSVLSAAPCQPGLLLEDLALLTQGKDPQRPLTCHNLCHPGVNSVGHMTTLQGTRKRAGLGKQGEGFVTSVFSMVHPLLPAHQQAVLSLSWMQYEKLKVMRCLHGGNKKRLRSQGKSSKRVAKRLLKDADNRWSLRLWHEYGHLEWLLGNVDDARKVFSTAAGMGGAKGLSSPALCELCLLWAQLEVEDGGKERGGGGQTETTTSPAVCVLTRLAEGTSSSSSHSLSPVSILKARKAYDHALTASLHALGQELHNSQANRKGQEDTLGEELRLRGLVGCYALFQYLTVGVQAADTVYSQARERMEGLHRTLTPDDATQPNNSKESKHAGTDANHTDSRLSAARLACECEALAVQHAALLRYHTSTSVFPLATLRQTLTSALSVWGGSAPLWSIYIQVENHYHSAGRARRFFHSVIRGSSSVVPRLFAIVAEQQRKQLVDAAQRSGCGDAALPILPENGLSNRIRGLFENTIATEMGAHCPLLWRMYMHFLVSEGNVDKARGIFYKALQNIPWAKGLYMDAVRLFPEHLQEFVDLMTEKELRLRLPLEELDILLED"
misc_feature 507..818 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(507..533,540..545,555..560,564..566,570..614, 621..629,633..641,675..683,693..698,702..707,714..734, 756..767,789..818) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 999..1958 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
agttgtcgtcatatgcgcgcgactatttacattcctacaaacctgctgcaaacacgtcccccatggctctgtttccagcttttgcgggagtaacagctaacaaagtcgacgatacgtcaaaagaattggactggctgtccaataagagttttcagcctgatgatgccgtatttcttcaccagcggactttagagaggactagcaagaggcagaccgaaaaggaatcgagtctaggcaaagagctgagctcagaggaggaggaagaggaagaggaaggtgatgtgccacctaaaaagaagaaaaagaagaaagaagagaagaagagaaagaaaaaaaagaaaaagcataagaagaggagtgggagatcttcagacagcagtggctcagactcggacaccgtctaccctagtgacctgaaaaaggagcaggagaaggacaggtcccaggctgctccattatccagtcgtttcttctggctggacgacctccagtctcccacagagcagccattctgtttggaccgaaaaccagaccctgccaactggacatacaaatccctgtacagagcggacatagccaggtacaggaggaaaggcagctcgtcactgggtctggaccgtcacacccaggaagtcagctgggaggagtcagagccaaacaagaaaaacaaaggtggggacaagaagagagcggccgaccgctacttctcttcagccaaccgccagctgctgcggtccgagcccaccgtgccaacattacccaggattccagactgcactgatgtcaccgtcccaacctctttcctttctctgggtgacgagcagggaaagggtgagggggagacaggtcagaaagtgcagacatcgtcagtcaatccccttcgtgtgtatgacgcctcgactgcactctggctgcaagggaaggggctgcaggaccagactgacgtccaggatcagcaggcagggcagagcaccgctcctctggccgggagaacagaagagtttaacaggcggctcagagaacaaccagcagacactcagctgtggatcgaattcatacgataccaagatgagcagtgtgcagcgagctttggaggtgaaggggagcagcagggcgatgtcgccgagcatcgcaagtcttcctaccgggccatattggagaaaaagctgagtatcgtggagcgcgctgtggctgccaacccctgctgcatagccctgcacctggagagactcaggatctgccaagagctgtgggaaccctcagtcctggctaaagaatggaagaaactggtgttcctccatccaaacagtgcccccttgtggagggagtacctgctgtttacacagagctacttcagcaccttcactgtgtcgaaggtcaacgctgcgtacgggaagtgtctgagcacgctgagtgcggtgcgtgatggcagcatggtgtctcatcctgccctgccaggcactgaggaggacatgctagatatcttcaaccagcagtgtcatttcctgcgtcagtgtggtcactcagagaaggcagtgtctctgtttcaggctctgatcgacttcaccttctacaaacctgacagcgtacgagacctgcccaccaagcagcaggtggaattctttgaaccgttctgggacagtggggaggctagggttggggaggccggggccagaggctggaaagcctggatgctccagcaggagagaggagggtggctacagcctagtgcagatgacgacgacgaggaggaagaagaggaggaggaggtgaaggatcggagccagcccagatggacaatctggctggatgtcgagtcatctcgcgaagcagctcattggctgccctggaggcccaacaaaaccaagggccaatcagaggaggactgtgacgatccagacagacaggtgttgtttgatgacatcggaccgtctctaatttgtctgtcttcaccagacctgaaactccgtcttcttctccgcttcttgtcattcctgggtctccctgtggactctgtgctctctgctgccccctgtcagccaggcctgctgctggaagatctcgcactgctcactcagggcaaagacccccagcgacctctgacttgccataacctatgccacccaggggtcaactctgtgggtcacatgaccactctccagggaaccaggaagcgggcagggcttgggaagcagggggaggggtttgtcaccagtgtgttcagtatggtccacccactccttcctgcccaccagcaggctgtgctgtcactcagctggatgcagtacgagaaactcaaggtcatgcgctgcttgcatggtggcaacaagaagcgtctccgctctcagggcaagagcagcaagcgggttgccaagcgactgctcaaagacgcggacaaccgttggtcgctaaggctgtggcacgaatacggccacctggagtggctgctcggtaacgttgacgatgctcgtaaagtgttctccacagcagcagggatgggaggagccaaaggattgagcagccccgccctctgtgagctctgcctgctgtgggcccagctggaggtggaggacggaggaaaagagagaggaggcggaggacagactgaaaccaccacctcccctgctgtgtgtgtgttaaccaggctagcagagggaacctcctcttcctcctcacactccctgtccccggtctccatcctaaaagccaggaaggcatatgaccacgctctgacagccagcctacatgccctgggccaagaactccacaactctcaagcaaacagaaaagggcaagaagacacactgggagaggagctgaggctgagaggcctggtgggctgctacgctctgttccagtacctcaccgtgggtgtgcaggccgctgacaccgtctacagccaggcccgggagagaatggaggggctgcaccgcacactaacaccagacgatgccacacagcccaacaacagcaaagaatccaaacatgctggcactgatgctaaccacacagactccaggctctctgctgccaggctagcttgtgagtgtgaggcgttagcagtgcagcatgcagcgttgctaagataccacaccagcaccagcgtgtttcccctggccacactgagacagacgctgacctctgccctctctgtctggggaggcagtgcacccctctggagcatttacatccaggtggagaatcattaccatagtgccggccgagcacgacgcttttttcactccgtgatcaggggcagcagcagtgtggtgccacgcctctttgccattgttgccgagcaacagaggaagcagctggtggatgctgctcagaggtctggttgcggtgatgctgccctgcccatcctgccagagaatggccttagcaaccgtatccggggcctgtttgagaacaccatagcaacagagatgggtgctcactgtccgctgctctggaggatgtacatgcatttcctggtttcagaggggaacgtggataaggctagagggatcttctacaaggctttacagaatattccctgggccaagggtttgtacatggatgcagtgcggctgttccctgagcacttgcaggagtttgtagatctgatgactgagaaggagctccgcctcaggctgcctttagaagagctggatattctgctggaggactgaagacaaacacactcgccattcaagagccaactttctcatccattttgctgatgacatgcccacctactgtctggcacactggatggcaaggacaggacactcgtacacacaaaggcacatcaactgagatgtttttaggctatacacaccgctcagagagtcaaagaaccatcgtgtctacataatgtctggaaaaatgctttatttttacactaaaccactgatggtgttttagtacttgtcaataaaactgattcttgcctggtt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]