LOCUS       XM_029735676            6367 bp    mRNA    linear   VRT 10-JUL-2025
DEFINITION  PREDICTED: Salmo trutta argonaute RISC component 4 (ago4),
            transcript variant X4, mRNA.
ACCESSION   XM_029735676
VERSION     XM_029735676.1
DBLINK      BioProject: PRJNA550988
KEYWORDS    RefSeq.
SOURCE      Salmo trutta (river trout)
  ORGANISM  Salmo trutta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042992.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_901001165.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/09/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6367
                     /organism="Salmo trutta"
                     /mol_type="mRNA"
                     /db_xref="taxon:8032"
                     /chromosome="36"
     gene            1..6367
                     /gene="ago4"
                     /note="argonaute RISC component 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:115175973"
     CDS             184..2838
                     /gene="ago4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X2"
                     /protein_id="XP_029591536.1"
                     /db_xref="GeneID:115175973"
                     /translation="

MEALGPGPPAPTSLFQPPRRPGMGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGGWGPAGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRGLSPQNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDLSQEQLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPLALAKAVQIHYDTQHTMYFA"

     misc_feature    265..651
                     /gene="ago4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    682..834
                     /gene="ago4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    835..1215
                     /gene="ago4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1009..1011,1054..1056,1096..1098,1108..1110,
                     1162..1164,1183..1185,1189..1191)
                     /gene="ago4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1354..2709
                     /gene="ago4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1813..1815,1825..1827,1861..1872,1879..1881,
                     1903..1905,1912..1914,1924..1926,1936..1938)
                     /gene="ago4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2017..2019,2023..2025,2263..2265,2677..2679)
                     /gene="ago4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

caaatccacaggatatgtgttaaatcactcagaagacaacgcatccacaacacctctggacatctacgcattatattccctttcttaaattagccccccctcagcgtcgcaataccgcccccaatttcagtgtcggtacggagccgccaggccgggacagagacggagagagagccctcggccatggaagcgctcggacccggcccgccggcccccacctccctcttccagcccccgcggaggcctggcatgggcaccgtggggaagcccatccgcctgctggcaaaccacttccaggtgcagattcccaagattgatgtctatcattacgatatcgacatcaagcctgagaaacggcctcggagggtcaaccgggaggtggtggacaccatggttcgccacttcaagatgcagatctttggtgatcgacaaccgggctacgacgggaagaggaacatgtacacggcccatccactacccatcgggagagacagggtggatctggaggtgactctaccgggggaggggaaggaccagaccttcaaggtgtcgctgcagtgggtgtcagtggtgagcctgcagatgctcctggaggccctgtcaggccacaatgaggtccccgaggactctgttcaggccttggatgtcatcacccgccacctgccttccatgaggtacactccagtggggcgctccttcttctcccctccggagggctactaccacccactgggcggagggagggaggtgtggttcggcttccatcagtcggtccgtcctgccatgtggaacatgatgctcaacatcgatgtctccgccaccgctttctaccgtgcccagcccgtgatcgagttcatgtgcgaggtgctggacatccagaacatcaacgagcagaccaagccactcaccgactcccaacgcgtcaagttcaccaaggagatccgaggtgggtggggacctgcaggtctgaaagtcgaggtcacccactgtggtcagatgaagaggaaatatcgcgtgtgcaatgtcacacgccgccccgccagccaccaaacgttccccttacagctggagaatggccaggccatggagtgtacagtggctcagtacttcaagcagaagtacagcctacagctaaaatacccccacctgccctgcctacaagtggggcaggaacagaagcacacctacctacccctggaggtttgcaacattgtggccgggcagcgctgcatcaagaagctgacggataaccagacctccactatgatcaaagctacagcacgttctgcacccgacaggcaggaagagatcagccgactggtcaaaagcaacagcatggtgggcggtcccgacccctacctgaaggagtttggcattgtggtccacaacgacatgactgaggtgacgggccgagtcctcccagcgcccatgctgcagtatgggggccgggtgagtaccgacactgggcgggactgtggcaggggactctctccgcagaataagaccgtggccacgcccaaccagggcgtgtgggacatgcgggggaagcagttctacgccgggatagagatcaaggtgtgggccgtggcctgcttcgccccacagaaacagtgcagagaggacctgctcaagagcttcacagaccagctgaggaagatctcgaaggatgcggggatgcccatccagggccagccgtgtttctgtaaatacgcccagggagcggacagcgtggaacccatgttcaaacacctcaagttgtcctatgtgggactgcagctcatcgtggtcatcctgcccggcaaaacccctgtctacgcggaggtgaagcgggtaggagacactctcctgggcatggccactcagtgtgtccaggtgaagaacgtggtgaagacgtccccccaaaccctctccaacctctgcctcaagatcaacgccaaactgggtggcatcaacaacgtccttgtgccccatcagagaccctctgtgttccagcaacctgtcatcttcctgggggcggacgtcactcaccctccagctggcgacggcaagaagccctccatcgcggcggtggtgggcagcatggacggccaccccagccgctactgtgccacggtgcgcgtacagacgtcgcgccaggacctgtcccaggagcagctgtacagccaggaggtcatccaggacctgaccaacatggtgcgcgagctgctcatccagttctacaagtccacgcgcttcaagcccacacgcattatctactaccgtggcggcgtgtccgagggccaaatgaaacaggtggcgtggccggagctgatcgccatcaggaaggcctgtatcagcttggaggaggactaccgaccgggcatcacctacatcgtggttcagaaacgtcaccacacccgcctcttctgctcagacaaggccgagagggttggaaagagtggcaacgttccagccggaaccacggtggacagcacaatcacccacccctccgagtttgacttctacctgtgcagccatgctgggatccagggcaccagccggccctcccactaccacgtcctgtgggacgacaactgcttcacggccgacgagctccagctgctcacctaccagctctgccacacctacgtccgctgcacccgctccgtctccatccccgcgccagcctactacgcccggctggtggccttccgcgcccgctaccacctggtggacaaagatcatgacagtgcggagggcagccacgtgtcgggccagagtaacggtcgggaccccctggccctggccaaggcagtccagatccactatgatacccagcacaccatgtacttcgcctgagccacgccagcaatggctgcagttctgtcccttctctttctctcctctctttctctcttttttgccagtctctctatctttctctctctcttgcgtcttgatctgcaccaaagcggttcgaagccagtgaagtgtgccaatggagtattttccttttcgggaaaaacgacatccggcgttcccgatcgagccgccttctaccagcaatccggcactgagagaccgtggggtttccaatgtacagagaaagcaaatacacgcatacacaagttgagccattttttatttttattttttgtcatttttttttttgtaacactgagcaatggatcggactgacgccaatcgtcagtggcagctctcctagctaagcaggactctgtctactttttacctcaaagcccctttgggtgaaaatctgtcataaggtcttgggttggtgggggtcatggggggtatgtatggaaacatgggtggggtggacctttttttgagaatatatttttttccttttatggtcatgtttttcctttctccttttcttcagtcttttacaagcgaggtcacctgggtatccatacccattactctttcttctcccatttagcgaagaataagtgtgtttgtgtatatacgtgtgcgtgtgtgtctttgcgtgtgtgtgtttcatggcaggccactgaattgtaaagggaaaatcaaggagataactgctgtaaatgcctcagatttgatgtttttatattcacacattacatatatatataaatatttacatctatagaacagattgaactatacaggcttcacagaggccggtgggtatatgtgtagcagtagcaaccgtggtttaaccggtgtggctgactgggcattgggacctattgaatggttgagagcttcgtgagggtttacggcattgggctaagccgccttagttggtgccccgtgtgaggaaggggatccatctcttaaacttgtttgtctcatcggttatgacattgttggggtggagcatgttttttagcaaggcgctagtcgtctgaatttttcagagcaggaaaacacattcacttaacttttggggtctcttttgctaccggccaattcattgcactgaccggggacgctaggtaagcaacagagggcactctctcttacctttatgcatttatacatacaaatcaaaaagcagaatttgtaagagtttaatataaaactgtttttgtggctaatcttaactattgttcagatatagttggtatatttgatgttgttcttattgttgttgttaatgttcttatctacgattatgataattatcagaccggcagcaaccagatgtgtagttaggagatcagtggctgggtttagagttggacactttgtagcattctggcctccggcgtggggaggcccaaggtggggcctccggcgtggggaggcccaaggtggggcctccggcgtggggaggcccaaggtggggcctccggcgtggggaggcccaaggtggggcctccggcgtggggaggcccaaggtgtattagtttatgcgcccttctgctcctcagttatgtagtagtttatggtagtagggaatggtttggctgtgttctccagtagggaagatctgtgttgatctatcaccgttactcctgactggtaaaacaggaggctaccgtcagtgctcatctggtgagtattgttggcagcagggggtttcggttcgaatggatgaaaggtgacaatcagctggcattaggaagaaactgggacagacagtggtaaaaagaggtatgcaataggcaatgagttacatttttagaacttcataatgtgtttctatgatagtttgtgtgtatttgaacaagtatatctatccaagtctaaacttctgttatttttgaatgaaataatgttttgaacaccagatatgaacataaagcataagcactgcccttggatctaatgacacctgaccagtcacgaccgcggttaaagatccaatttaaccacagtcgtggttatggttgtgcataactcgcggtgaggatggggcggggggggttcgacggcggcgtgcacgcctcgtcaggggggtcggctcagcgaaaaacccttttgtaataaaccatacgttaagcagcaggtttgctatgaatgagttttgagcgcctacctgtcgagggcgtgggcgcttgcctatgggaggggagcatggtggcagtccaggcgttgcatgcagtaagttttaggggcggggctaagctgttgtggagacgtgcactagtttccccatgcggcaagggtgctgcgttgattcagcctggtgtggtagtctgcagagtgtgttcctgtgggtgtgaccagactggagcattgtccaggatgtgggtgtggtttcctagcaggggatctaaaggtggtgattacttcccagttttgaacatattatcattgcaaagcaatattaacccgaaaatccagttttcgaatgaggaaaaagctataattcttcttgtcgacgtggctgttggtctgctctctatcgcagtttgtttctgtaacttgtttttttgcctgtatcaatcagtgggaatgtgcattcggtggactagctctttaggatctgagaataaaaaataaaaaaaggtaacatttagactttgctcgcctgcatgccagagtattgtctctaaaaaaaatctctttagaattatatttattaagagatgggaggaaaaagaaaaaaaatatggtaaatgtttatgaatttagtgagactgttataggctagcaatattgtccactcctcaagacgtattttaaagattcctacacaaatgtcagtaaaaaacggaggcacaggccgctagaggcttgagcgttcgagcctttgtgtcgtggcccgaagacaaacgaggtactttcttcaaaagtgggcccggtaaagacttgaactctcgcccccgcacaggccccagtgtagcgtccatttaggcctccacttcctggtttgtgcccctgccacgcctcttggggctgtcctgtctcgtggcgccaccctgctggccacccacacaagcgcacttcctctctgtggggggcctcggcccaaggcgtccacggccacaggaatacctcctttttaacctttttaacgaaccattctttctgtgccccgtttgaaagagagcatgattttattttttaattcctctttgatatgactacaggtttatttgacattgtgtaatttaattttcttctttattctggggtgtagctctgctgttttttctgctagtggtctgagctgtgtgactgtccaatagcaatagaaaggtaccctgtctgacctgctggggagggggtggggcttcctcaggcccctcccactaaggcgcctaatcactcgctgtattgctatgtgacatgttgaaaacttttttttatttttttttagcctgcagggaatatttgtgttattgtgcaaagtaataaattggtattttatgcctatatcata

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