2024-03-29 17:45:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029597781 5315 bp mRNA linear VRT 28-JUN-2019 DEFINITION PREDICTED: Rhinatrema bivittatum NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, mRNA. ACCESSION XM_029597781 VERSION XM_029597781.1 DBLINK BioProject: PRJNA549481 KEYWORDS RefSeq. SOURCE Rhinatrema bivittatum (two-lined caecilian) ORGANISM Rhinatrema bivittatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042618.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Rhinatrema bivittatum Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5315 /organism="Rhinatrema bivittatum" /mol_type="mRNA" /db_xref="taxon:194408" /chromosome="4" gene 1..5315 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:115089646" CDS 75..3545 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X2" /protein_id="XP_029453641.1" /db_xref="GeneID:115089646" /translation="
MALFPAFEGSAGDTQTVGDGAKRGAELDWLSNRSFHSTEAETLHRRILQPEDPASAPSLLSRSPLRSDVTEESVADEGTKKSSKKKKKKHKHLKRKKTRKTDSRNSESSSETEPVKDKAGEQERGAQKPGQSIEISDTVKRHLVWLEDIQSVTGEAFRIDKNPDPANWEYKSIYRAHIARYKRKGNSCLGINPKKQWISWEDSGTEKKQLIKRAERYFTKSGVRLLATDGIPVCSRTQATLLCDPALIPLQEGGEGEKAAWVNPLGVYDASTTLWLQGKGVPESEAKQPPSREDLNHTLKAKVEEFNRKLRESPGDVQAWMAFVDFQDELLKGPSMYTTNERELESGRKSLRLVLEKKLCILERAIESNPHHVELKLARLKLCEEFWEPAALLKEWQKLVFLHPNNAALWQKYLLFSQSQFSTFSVSKVISLYGKCLSTLAAVQDGSMVSHPVLAGTEEAMFAIFLQQCHFLRQAGQSEKAVALFQAMSDFTFFKPDSLRDVPTKRQVEFFEPFWDSGEPRFGERGAKGWNSWMRQQERGGWVVLHDDKEEEEDDVEDEPEIEDKTRPKWQIWLEMECAREAKHWLPWRPSKAGGQSEEDCEDPERQVVFDELGPSLFRISSPELKFQLMDAFLQFLGVPCGHWLPASGLYLAMDENSVFDSGHPSGRPLTPADCPLSGLGTLGHMATLARGRRQVGHAKEGEEFLQSIFQLALTCFSGEEKSHFSVCWLQYEISKAIWYLRVKNKKNLKSQGKKSKKLAKRLLKEVENRNSLPLWREYARLEWLLGNADDSRKVFDTAISLAGSGGLKSAGLCSLCLLYAELEVGLLTSLEGTVSSRAVHVLTKLADSAPYVPYNGQVLSVGVLKARKVYEHAVRDCLQEGCVGGHSMSLDHLVSLVGCFALFQYLTVGVEAAVQVFGLFTDKASGVSVQKAGGPSDGNLETRSSPTALETLSLMHANLLRYHLRVGVHPLSSLRETLTGALRLYPGNQLLWKSYVEVESKLHNASKARKFFDNMRRSSTCLEPWLFAIQAEQARKKLVETVQRQDIGAIHATIPETGLTNRIKALFEHAVRSQQGAHCPLLWRMYLHFMVSSGEKEGGKGLFYKALQSCPWAKVLYMDAIDYFPDQLQEILDLMVEKELRVRVPLEELELLLED"
misc_feature 540..824 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(540..566,573..578,588..593,597..599,603..647, 654..662,666..674,696..704,714..719,723..728,735..755, 774..785,804..812,813..824) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 987..1988 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ggcagtgacgttttttgccctgcgacggtgatgggctgaacgtaagcgttgggagttggagggtggccgcggctatggctctgttcccggcctttgaggggtccgcaggtgatactcaaaccgtcggcgacggcgcaaagagaggtgcagagttggactggctgagtaaccgaagtttccacagcaccgaagcagaaacgctgcaccggcggatcctgcagcctgaggaccctgcatctgccccatctcttctctccaggagtcctttgagatccgatgtgacagaagaaagcgttgcagatgaagggaccaaaaaatcaagcaagaagaagaaaaagaaacacaagcatctcaagagaaaaaagacgaggaagacagattctaggaacagtgaatcgagctcggagacagagcctgtgaaggacaaggcaggggagcaggaaagaggagcccagaaaccaggacagagcattgaaatatcagacaccgttaaaaggcacttggtttggctcgaggatattcagtcggtgaccggagaggccttcagaattgataagaatcctgatcctgcaaactgggagtacaagtccatctaccgagcacatatagcaaggtacaaaaggaaagggaactcctgtcttggtattaatccaaagaagcaatggataagttgggaggactctggcactgaaaagaaacagctcatcaagcgagcggagcgctacttcaccaaaagcggggtgcggttactcgccacggacgggatcccagtctgcagcagaacccaggccaccctcctctgtgaccctgctctcatacccctccaggaagggggcgagggtgagaaggcggcctgggtcaatcctctcggagtttacgatgcgtccaccacgctgtggctccaaggaaagggggttcccgagagtgaggccaagcagccgccgtcccgcgaggacctgaaccacaccctgaaggcaaaggtggaggagttcaaccgcaagctgagggagagtcccggggatgtccaggcttggatggcgtttgtcgatttccaggacgaactgctgaaaggacccagtatgtacaccaccaacgagcgagagctcgaaagcggaaggaagtcgctgaggctcgtcttggagaaaaagctctgcatcctggagagggccatcgagagcaatccacaccacgtggagctgaagctggccaggctgaagctgtgcgaggagttttgggagcccgccgctctgctgaaagagtggcagaagctggttttcctgcatcccaataatgccgcgctctggcagaagtatctcctcttttcccaaagccagttcagcaccttttccgtgtccaaagtcatcagcttgtacgggaaatgcctgagcaccctggcagcagtgcaggacggcagcatggtgtcccaccctgtgctggcgggcacagaggaggccatgttcgccatcttcctgcaacagtgccatttcctgcgccaggcgggccagtccgagaaagccgtcgctctcttccaggccatgagcgacttcacctttttcaaaccggacagcctcagagacgtgccgacgaagaggcaggtggagttcttcgaacccttctgggacagcggggagcctcggtttggggagagaggagccaaaggctggaactcctggatgcgtcagcaagaaaggggaggctgggttgtgctccacgatgataaggaggaggaggaagatgacgtagaggatgagccagaaatagaggataaaacgcgtccaaaatggcagatctggctggagatggagtgtgcacgcgaagccaagcactggctgccctggagacccagcaaagccggtggccagtcggaagaggactgcgaggacccagagagacaggtggtgtttgatgaactgggcccatctttattcaggatttccagccccgagctgaaatttcagctgatggacgcattcctgcagtttttgggggttccatgtggacactggctccctgcttccggcttgtacctcgccatggatgagaactctgtctttgatagcgggcacccttctgggaggccgctgacccctgctgactgccccctctctggactcggcactctgggccacatggccacactggccagggggagacggcaggtgggccatgctaaggaaggggaggagttcttacagagcatcttccagctggcgctgacttgcttctcgggagaggagaagtctcatttctcagtctgttggttacagtatgaaatatccaaggccatttggtatttacgagtgaaaaacaagaagaacctgaagtctcaggggaaaaagagcaaaaagctagccaaacgcctccttaaggaagtggagaaccgaaacagtcttcccctctggagagagtatgcccgcctggagtggctgctgggaaacgcggatgattcccgtaaggttttcgatacagccatcagcctggcagggagcggtgggctgaagagcgctgggctgtgcagcctgtgcctgctttatgctgaactggaagtgggcctgctgacgagcctggaaggaacagtcagctcccgcgctgtccacgtcctgaccaagctcgccgatagcgcgccgtacgtcccctacaacgggcaggttttatcggtcggcgttttgaaagctcggaaggtgtacgagcacgcagtgcgtgactgcctccaggaaggctgcgtcggtggccacagcatgtcccttgaccaccttgtgagcttggtgggttgttttgccctcttccagtatttgactgtgggggttgaagctgcggttcaggttttcggactttttaccgataaagctagtggtgttagcgtgcagaaagctggaggacctagtgatgggaacctggaaactcggagttcgccgactgcacttgaaaccctctctctgatgcatgcaaatttgctcaggtatcacctcagagttggcgtgcatcccttgagttcgctgagagagacccttacgggggctctgaggttgtatcctggcaaccagttgctctggaagtcctatgtggaagtggaaagtaaattgcacaatgctagtaaagcaaggaaatttttcgacaacatgagaagatcctccacatgccttgaaccatggctctttgcgatccaggcagagcaagctagaaaaaagcttgtggagacagttcagaggcaagacataggagcgatccatgcaacaatccctgagacaggattgacaaaccggatcaaagcgttattcgaacacgccgtccgaagccaacagggagctcactgcccgctgttgtggaggatgtatttgcactttatggtttcatcgggcgagaaggaaggcggtaaagggctgttttataaagcacttcagagctgtccctgggccaaggtgctgtacatggatgccatcgactacttcccggatcagctccaggagatcctggatctgatggtggagaaggaactgcgggtccgcgtgcctctggaagagctggagctgctgctggaagactgagccgcttcagctccggacacgggctcgggtcgccaaggaatccgccaaacgccgagcgattcagaaacagagaggaatcttgcagaatggatagaaaatgtggtttttgcaataggtgatccctgttgtagaaaaaggcaggagcacaaggtatccggaaggctctgcagtctggccttctacaaagtgcctgcctgtcgggacaaatgtgctaaccagacggagagggaacgaatggcgtagcagggcctgatgtgcatttccattctttaccttatgctctgcccttaggcttttttttttttaatatatactttatttttttgagggtctcaagcgggtatccagcattctacagtgttccagagcggttgtcattaaagcaaaacgtgacacagtttaatctattcatactcctaatatatcgcctttctaggttaatcagaggtttaccataaaacggtcagatatatcaatcataataagttatatataaagccacaacataaaaaaaaaatagccccacccaagaccgttaactctacgtaaaatagttttcattcatcaattcaagtcaaataaatcacaatctaataaaatcaacacccaccgtaaagcacaaatgagacaccgcgatggaacagaacataagaacataatatacacacacggaagaaattcagtaataaaacacaacagaaaccctgtggcctaaatttggagctccataacagggaacatcttctccatgcccatgtacctcttgcgttaaaactgaatcaattaaaacactttaaatctgagggaaatgaatagagagaaaaatagaaatagaacaggttcctcctgtatctggtccttcctcccttttcttcagttaccctcagccctcccagaatttctcctgtccttagtcctctgagctctgccagctcctcctgcacggtgccctgcactatctaagggttctgcctcttctaccacagagctgaaatggtgctttaaatttaaaaaaaacccacatcactgcagcttccagattgcttaattctaaagaagccaggatgcaccggtttcatgtgtgagtatgataaatcacacgcatggcacatccctccagataacgcaagcgtttgcagcatcggctcgcagcagacaaaaatctgtctgtgatggcgaaccatctgctgccacctgcgaggcttgaactccccatttcagtgtgagcatgggtgtgggggatcagcacaaaagcatgtactggtcagggcagtgagcttccctgggacatgatggatgcggtaatacagtggcttccgggtcaagcttttttttttttatgcggagaggatgtgtgcaaagtctcttctaggagtaacctccggtctctgttataaaatagaattgtagttcttacactgcatttacgttcacttcctaactgcattgggggtattctctgcctctcctgcagtaaatctgtctgctcattcaatgtatatatttttacatacgacttaaaacagtttttctggaatttggctatatattcatcttgcagcattttaaattctctaatgccaggtgtactgcactttgttgaaatgtgcataatttttgaatgagctatgttggatgatgtaaaaaaacacacagctgtaaatagtatttatatattgaattgtaaaaacatattaaggtttatcagccttccaattttttattctgtattttattgtatatataaaataaagaatacaccttaaatga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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