2024-04-18 19:48:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029493919 3778 bp mRNA linear VRT 16-JUN-2019 DEFINITION PREDICTED: Echeneis naucrates NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_029493919 VERSION XM_029493919.1 DBLINK BioProject: PRJNA548465 KEYWORDS RefSeq. SOURCE Echeneis naucrates (live sharksucker) ORGANISM Echeneis naucrates Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042532.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Echeneis naucrates Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3778 /organism="Echeneis naucrates" /mol_type="mRNA" /db_xref="taxon:173247" /chromosome="22" gene 1..3778 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:115035880" CDS 18..3614 /gene="nrde2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_029349779.1" /db_xref="GeneID:115035880" /translation="
MALFPAFAETSSNKVEDSSKDWLNNKSFQSTEALSLHKRFLENKEPSVDKEVSSAEEKREEDVPPKKKKKKSGKRKKKKKHKKKSGGHSDSSGSDSDTIYPSDLKREEEAKKSQAAPLASCFSWLDDLQSPTEHPFCVDRKPDPANWTYKSLYRGDVARYKRKGRSSLGLDPVRQGVSWEESESNKKQKSGEKKKGDNRYFSRLSRQILRSNAAVPTLPTVPECSDVISTSSFLLLGDDEGANKEKETSDRVQTSSVNPLGVYDSSTALWLQGKGQQDKTEEQNQDIEAGQGALLMARRTEEFNRQLREQPADTQLWIKFIRYQDEVSLAEFGSEEMQQDHDSTERRKSSYRAVLEKKLSIAERAVDTNPTCIALQLERLRICQELWEPSVLAREWKKLVFLHPNSAPLWREYLLFTQSYFSNFTVPKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFIQQCHFLRQCGHSEKAVSLFQAMMDFTFYKPDSVREMSTKQQAEFFEPFWDSGEARVGELGARGWKAWMHQQERGGWLQPSADDDEEEDEENEEEVKDPSQPRGTVWLDVESSREAAHWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLSSPELQLRLLLHFLSFLGLPVDSVLSPPPCLSGLLLESLSLLTQVNEFQRPLTSHNLPDRGVNSVGHMTTLQGTRKMVGLGKQGERFVTNLLNMVQPILPPHHRAVLSLSWMQYEKLKVFHCLRTGNKKHLRSQGKSSKRVAKRLLKEPDNRSSLVLWREYAHLEWMLGNLDEGRKVFSTATALGGTKGLSSPTLCELCQLWSQLEVEDGAPMQGGGLTDVTASPAVVVLTQLAEGTSSSSSSHSLSPVSILKARRSYEQALTASLSALDQVCSSPQTTRKGDEDLLGGKLRLSGLVGCYALFQYLTVGIQAATAVYTQAREKMDNLHHTLALDKPFNSNKETHHTSTDTKNSAADSSQISRRNVSKVAFECQILAVQQAALLRYHNSICVFPLATLRQMLTSALTTWSSSAPLWSIYVQVENRYHSAGRARRFFHSVTRETSSVVPRLFAIVAEQQRKQLVDAAQRSCCHDAALPILPENGLSNRIRGLFEGAIATEMGAHCPLLWRMYMHFLVSEGKVDKAKGIFYKALQSIPWVKGLYMDAVQLFPEHLQEFVDLMTEKELRVRLPLEELDILLED"
misc_feature 420..731 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(420..446,453..458,468..473,477..479,483..527, 534..542,546..554,588..596,606..611,615..620,627..647, 669..680,702..731) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 921..1886 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
tatatgcgacgttcgccatggctctgtttccagcgtttgcagagacatcgagtaataaagttgaagattcgtccaaagactggctgaacaacaagagttttcagagcacagaagccctttctctccacaagcggtttttagagaacaaggagccaagtgttgacaaagaggtgagctcagctgaggagaagagggaagaagatgtgccccccaaaaagaaaaaaaagaagagtggaaagaggaaaaagaagaaaaaacacaaaaagaagagtggggggcattcagatagcagtgggtctgactctgacaccatctacccaagtgatctcaaaagagaagaggaggctaaaaagtcacaggctgctccgttagcaagttgtttctcctggttggatgaccttcagtcacccacagagcatccattctgcgttgaccgaaaaccagatccagccaactggacatacaagtccctttacagaggagatgtagctaggtataagaggaaaggcagatcatcattaggtctggatcctgtcagacagggagtcagctgggaggagtcagagtcaaataaaaaacagaagagtggggagaagaagaaaggagacaacagatatttctctagactcagccgccagatactgagatccaatgctgctgttcctacgttaccaacagttcctgaatgtagtgatgtcatcagcacctcctccttcttactgctgggtgatgatgaaggggcgaacaaagaaaaagagactagtgacagagtgcagacatcctctgtaaatccactcggtgtatatgactcttcaacagccctttggctgcaggggaagggacagcaggacaagacagaggagcagaaccaggacatagaggcaggacagggcgccttgcttatggccagaaggactgaagagtttaacaggcagctcagagagcagccagcagacacacagctatggataaaattcatacgataccaggatgaggtgagtttagcagagtttggaagtgaggagatgcaacaggaccacgattcaactgagcgtcgcaaatcctcctaccgagcagtcctggaaaaaaagctgagcattgctgaacgcgctgtggacaccaatcccacctgcatagctctgcagctggagaggctcaggatctgccaggagctgtgggagccctctgttctggctagagaatggaagaaactggtgttcctccacccaaatagtgcccccctatggagggagtatctgctcttcactcagagctacttcagcaacttcactgtgccaaaagtcaactctgcctatggaaagtgtctaagcacactcagcgctgtgcgggacggcagcatggtctctcatccagccctgccagggattgaggaggatatgctggatattttcatccagcagtgtcatttcctgcgccagtgtggacattcagagaaagcagtctctctatttcaggccatgatggattttactttctacaaacctgacagtgtacgagaaatgtccaccaagcagcaggctgagttttttgagccgttctgggacagtggggaggcgagggttggggagttgggggcaagaggctggaaagcctggatgcaccaacaagagcgtggaggatggctgcaacccagtgcagatgatgatgaggaagaggatgaagagaatgaggaagaggtgaaggatccaagccaaccgagaggaacagtctggctggatgtggagtcatcccgggaagcagcacactggttgccgtggagacctgacaaagctaagggccaatcagaagaggactgtgaggacccagatagacaggtgttatttgatgacatcggtccatccttaatttgcttatcctcaccagagctccaacttcgccttcttctccatttcttatcatttctggggctgcccgtggactctgtgctctctcctcccccctgcctgtctggcctgctgctggagagcctgtctctgctcactcaggtgaatgagttccagcgtccactgacctcccacaatctacctgaccgtggggttaactctgttggtcacatgaccactcttcagggaaccaggaaaatggtggggcttggaaaacagggtgagaggtttgtcacaaatttgttgaatatggtccaacctatccttcctcctcaccaccgagcagttctgtccctaagctggatgcagtatgaaaaactcaaggtctttcactgcttgcgcactggcaacaaaaagcatctgcgatctcaaggcaagagcagcaagcgagtggccaagcgacttctcaaggagcctgacaaccgctcttcgttggtgctgtggcgagagtatgcccacctggagtggatgctgggaaaccttgacgaaggtcgcaaagtcttctccacagccacagcattgggaggaaccaaagggctgagcagccccacactctgtgagctgtgtcagctgtggtcccagctggaggtggaggatggagcacccatgcaaggaggaggactaactgatgtaaccgcgtccccagctgtggtggtattaacccagctagcagaaggaacttcctcatcctcttcctcccattccctctctccagtatctatccttaaagccaggaggtcttatgaacaagctttgacagccagcttgtcagcacttgaccaagtctgcagcagtccgcagaccaccagaaaaggtgatgaagacctccttggaggcaaactgaggctgagtggcctggtaggttgctacgctctgttccagtacctcacagtgggaatccaagccgctactgctgtgtacacccaggccagagaaaagatggacaacctgcatcatacgctggcacttgacaagccatttaacagcaataaagaaactcaccacacaagcactgatacaaaaaactcagcagctgattccagccaaatcagcagacgcaatgtcagtaaagtagcctttgagtgtcagatactagcagtacaacaggcagccttactgaggtaccacaacagtatctgtgtctttccactggcaacattgagacaaatgctgacctctgccctcacaacttggtccagcagtgcccccctctggagcatttatgtacaggtagagaatcgttaccacagcgctggccgggcccgccgcttctttcactctgtaaccagggaaaccagcagtgtggtgccacgcctctttgccattgttgcggaacagcaaaggaagcagctggtggatgctgctcagaggtcttgttgccatgacgccgccctgcccatcctaccagagaatggcctcagcaaccgtatccgtggtctttttgaaggcgctatagcaacagagatgggtgctcactgtcctttgctttggaggatgtacatgcatttcctggtctcagaagggaaggtggataaagccaaaggaattttctataaggccttacagagtattccctgggtgaagggtttgtacatggatgccgtacagctgttccctgagcatctgcaagagtttgtagatctgatgacagagaaagaactccgagtgagactgcctttagaagaactggatatactactggaagactgaccacacacctagctgctgtaatgaatagtgaagttggaatgactttacctaaagatccacaaggggccattcctttgtagatgtctgaaaaggctttattttcacagtaaatagcaacatgttttattacttgataatgtcaataaatgggattcttatttgtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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