2024-03-29 21:22:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026863202 5016 bp mRNA linear VRT 24-OCT-2018 DEFINITION PREDICTED: Athene cunicularia protein argonaute-1 (LOC113488159), mRNA. ACCESSION XM_026863202 VERSION XM_026863202.1 DBLINK BioProject: PRJNA497593 KEYWORDS RefSeq; includes ab initio. SOURCE Athene cunicularia (burrowing owl) ORGANISM Athene cunicularia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Athene. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020799130.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Athene cunicularia Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..5016 /organism="Athene cunicularia" /mol_type="mRNA" /isolate="RWA" /db_xref="taxon:194338" /chromosome="23" /map="unlocalized" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="Argentina: rural area near Bahia Blanca" /collection_date="2013" gene 1..5016 /gene="LOC113488159" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 55 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:113488159" CDS 199..2418 /gene="LOC113488159" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_026719003.1" /db_xref="GeneID:113488159" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYARVLCPLPAVGVGSRRRPGTSRVPSVLPVVTRGPGPSLSPQVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 241..465 /gene="LOC113488159" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 493..645 /gene="LOC113488159" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 646..1008 /gene="LOC113488159" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(802..804,847..849,889..891,901..903,955..957, 976..978,982..984) /gene="LOC113488159" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1141..2289 /gene="LOC113488159" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" ORIGIN
gcaggcgcatacctgccacccttgcagcaggtctttcaagcgccgcggcggcccgggataggaactgttgggaaacccatcaagctcttggccaactactttgaagtggacattcccaagattgatgtgtatcactatgaagtggatatcaaacccgacaaatgtccacgcagagtcaacagggaagttgtggagtacatggtacagcacttcaaaccgcagatcttcggcgaccgaaagcctgtctacgatgggaagaagaacatctacactgtcacggccttacccattggaaatgagcgggttgactttgaggtgacgatcccaggggaaggcaaggacaggatatttaaggtctccatcaaatggatggccatcgtgagctggcgcatgctgcacgaggccctggtcagcgggcagatccccgtccccctggagtccgtccaggccttggatgtcgccatgaggcacctggcttccatgaggtacactcccgttggccgctccttcttctccccccccgaaggttactaccaccccctgggagggggcagggaggtctggttcggtttccaccagtcggtcagacctgccatgtggaagatgatgctcaacattgacgtgtcggccaccgccttctacaaagcccagcccgtcatcgagttcatgtgcgaggtgctggacatccggaacatcgatgagcagccgaagcccctgacggactcgcagagagtgcgtttcaccaaggagatcaaaggtctgaaagtcgaggtcacccactgcgggcagatgaagaggaaataccgtgtctgtaacgttacccggcggccggccagccaccagacgtttcccctgcagctggagagcggtcagacagtggagtgcacagtggcacagtactttaagcagaaatacaacctgcagctgaaatacccccacctgccctgtctccaggttggccaggagcagaagcacacgtacctgcccttggaggtgtgcaacatcgtggcaggccagcggtgcatcaagaagctcactgacaatcaaacatccaccatgataaaagcaacagccaggtctgccccggacagacaggaggaaattagtcgcctgatgaagaatgccagctacaacctggatccgtacattcaggagtttgggatcaaggtgaaggatgacatgacggaggtgacggggagggtcctgccggcgcccatcctgcagtacggcggcaggaaccgggccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggcgatcgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacggaccagctgcgcaagatctccaaagacgcggggatgccgatccaggggcagccctgtttctgtaaatacgcccagggtgcagacagcgtggagcccatgtttcgacacctcaagaacacctattcggggcttcagctcatcatcgtcatcctgccagggaagacaccggtgtacgctcgggtgctctgcccgctgccggctgtgggtgtcggaagcaggcggaggccgggaacatcccgtgtcccctccgtccttcccgttgtaacgcgcgggcctggcccgtctctgtcgccgcaggtcgtgggcagcatggacgcccaccccagccggtactgtgccaccgtgcgcgtccagcggcctcgccaggaaatcatcgaggacttgtcctacatggtgagggagctcctcatccagttctacaaatccacccgcttcaaacccaccaggatcattttctaccgcgacggcgttcctgaggggcagctcccgcagatccttcactatgagctcctagcaatccgagacgcctgcatcaaactggaaaaggattaccagcctggcatcacctacatcgtcgtccagaaaaggcatcacacccgtctcttctgcgcagacaagaacgagaggattgggaagagcgggaacatcccagcaggaacaacagtggatacaaatatcacccacccctttgagttcgacttctacctgtgcagtcatgcaggcattcagggtacgagccggccatcccattactacgtgctctgggatgacaaccggttcaccgcggatgagctgcagatcctcacgtaccagctgtgccatacctacgtgcgctgcacccgctcggtctccatcccggccccggcgtactacgcccggctcgtggcgttccgagcccggtaccatctcgtggacaaggagcacgacagtggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcgaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgttttttttccaatgagaaatcactgcagggcaggcagcgtcaattcgaggcaggagaccagcaccacgggacagaaagatccaacacctttgtaggattggaagagactgatgattatttttttaatttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaaggaagggataaaactcccaggaggcggaagcaggttttcatttttaagatgcaatactatagactcctgactgtgaaatggcggatttggtcctccgttgcccaccaggcgctgacatcgatatgctatgcaaactaagtgctgagccctctgatgtcatgttttgtgaagatcctacgtttagcacagtcctgttttttcctcaagactacagtatttggttcatattctcctttgcaccttgtgtcaacctccactgctgtatatctgcaaggtgacggggaggagaccaggaactattcatggtcagtagagtagtgaactcctaggaaggcttttagagcgtagggaatgcatcaacactaagtgtcaacatgagaagcctacattcctgtacacaagtgcctgcatagtgacacaaatccagcacctccatctcatcctcagaactcgggcttgtgttcgttgaaagcaaaatgatctcagaggggctgtacccactcaccttgtgttagaaagcccctcgttaagaataaaattggggttaaggtcaaggttctctctgcaaatcagtttgttcaccagcattacaacggaaagcacctggctgctcttctgcagcgaggggcaaaagtattttggtttctagtttttattttagtgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggcatttacagaaacagcttgttgctctgtaacaatttttttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagactcgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaactctcagctgttgacttgcagatcgtgttctgcccttatttcaccgtctgcgttgggttttcatggttttgaataaataaaaaagccaaactcagtagctgctgtgccctttaaaccctatttccattttgaagaaatcgagaaggggtttgagtcacccgcatgttttgtataacggactatgcactgtaccctctacgcggctccagcattcagcatttctacccttttcttgtccgagatgcaaacgagtaactgcatgttgaggtgctgtgtgttttgctacccgtagtggatagtgttaacccggatacatatcaggatttgtagttagccacaaaccccccacggacatcccgaatggctcccgagtctctgccttctccgtgcgcacgtgttccttctgcaactggaaacatcgccaggtgcatgcagttttgtgggaagaggagtaactttcatttacctgtcagttgttgaatgctgtttgtttcccttatctcatatctgaacgtagcggggccgagggggcagagcaggcccctctccccccagagcttccaggggcggtcggggtgtcctggtgttcgcaagcgtacgacccgatgtcttagtctcaaaaagcccaagcgttcaacgttgcctcgcggaaggttttcttcttggaaaattagcgtgaaataaaggaatgtgattctttcaggaagggaagccagacagcaggacagcaataaacaagtgaaaattcatatcttgcctgagtgatttgcacttcaatagttgtgaaagaaaatttacgggactccagtgcttttgtgttcaatttctagcccctttcgtacctcctttatacgagcaagtgttgaactgtacatggggtgttcacaagacactctgtttgggttgttatttttcttgtggttttgttttggttttttttttttttttgctttagcttgaactctgtatggtccatttgttaaatagacgtgaacagttgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcttatattttaaaggttgaatatcaaatttttttttttttgtatgcgtggaattaagactggtaaagagtaacgaaatccttggattaggccaaaaggaaatactgtaagatcataaccacctctttattaaagaaaacggtatgattaaagagctccagaacattgtatttatatttgatttgatttgattgcctttgtggatttttaaaatttttttttttttttttgccttggtcctgatttttgcttgcaactttgactttgcagtcccaagtgtctgttaccctgtaactgttggcagaagacctaaataaaagcaatgtgaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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