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2024-03-29 21:22:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026863202            5016 bp    mRNA    linear   VRT 24-OCT-2018
DEFINITION  PREDICTED: Athene cunicularia protein argonaute-1 (LOC113488159),
            mRNA.
ACCESSION   XM_026863202
VERSION     XM_026863202.1
DBLINK      BioProject: PRJNA497593
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Athene cunicularia (burrowing owl)
  ORGANISM  Athene cunicularia
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Athene.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020799130.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Athene cunicularia Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5016
                     /organism="Athene cunicularia"
                     /mol_type="mRNA"
                     /isolate="RWA"
                     /db_xref="taxon:194338"
                     /chromosome="23"
                     /map="unlocalized"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="Argentina: rural area near Bahia Blanca"
                     /collection_date="2013"
     gene            1..5016
                     /gene="LOC113488159"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 ESTs, 55 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:113488159"
     CDS             199..2418
                     /gene="LOC113488159"
                     /codon_start=1
                     /product="protein argonaute-1"
                     /protein_id="XP_026719003.1"
                     /db_xref="GeneID:113488159"
                     /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYARVLCPLPAVGVGSRRRPGTSRVPSVLPVVTRGPGPSLSPQVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    241..465
                     /gene="LOC113488159"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    493..645
                     /gene="LOC113488159"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    646..1008
                     /gene="LOC113488159"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(802..804,847..849,889..891,901..903,955..957,
                     976..978,982..984)
                     /gene="LOC113488159"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1141..2289
                     /gene="LOC113488159"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
ORIGIN      
gcaggcgcatacctgccacccttgcagcaggtctttcaagcgccgcggcggcccgggataggaactgttgggaaacccatcaagctcttggccaactactttgaagtggacattcccaagattgatgtgtatcactatgaagtggatatcaaacccgacaaatgtccacgcagagtcaacagggaagttgtggagtacatggtacagcacttcaaaccgcagatcttcggcgaccgaaagcctgtctacgatgggaagaagaacatctacactgtcacggccttacccattggaaatgagcgggttgactttgaggtgacgatcccaggggaaggcaaggacaggatatttaaggtctccatcaaatggatggccatcgtgagctggcgcatgctgcacgaggccctggtcagcgggcagatccccgtccccctggagtccgtccaggccttggatgtcgccatgaggcacctggcttccatgaggtacactcccgttggccgctccttcttctccccccccgaaggttactaccaccccctgggagggggcagggaggtctggttcggtttccaccagtcggtcagacctgccatgtggaagatgatgctcaacattgacgtgtcggccaccgccttctacaaagcccagcccgtcatcgagttcatgtgcgaggtgctggacatccggaacatcgatgagcagccgaagcccctgacggactcgcagagagtgcgtttcaccaaggagatcaaaggtctgaaagtcgaggtcacccactgcgggcagatgaagaggaaataccgtgtctgtaacgttacccggcggccggccagccaccagacgtttcccctgcagctggagagcggtcagacagtggagtgcacagtggcacagtactttaagcagaaatacaacctgcagctgaaatacccccacctgccctgtctccaggttggccaggagcagaagcacacgtacctgcccttggaggtgtgcaacatcgtggcaggccagcggtgcatcaagaagctcactgacaatcaaacatccaccatgataaaagcaacagccaggtctgccccggacagacaggaggaaattagtcgcctgatgaagaatgccagctacaacctggatccgtacattcaggagtttgggatcaaggtgaaggatgacatgacggaggtgacggggagggtcctgccggcgcccatcctgcagtacggcggcaggaaccgggccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggcgatcgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacggaccagctgcgcaagatctccaaagacgcggggatgccgatccaggggcagccctgtttctgtaaatacgcccagggtgcagacagcgtggagcccatgtttcgacacctcaagaacacctattcggggcttcagctcatcatcgtcatcctgccagggaagacaccggtgtacgctcgggtgctctgcccgctgccggctgtgggtgtcggaagcaggcggaggccgggaacatcccgtgtcccctccgtccttcccgttgtaacgcgcgggcctggcccgtctctgtcgccgcaggtcgtgggcagcatggacgcccaccccagccggtactgtgccaccgtgcgcgtccagcggcctcgccaggaaatcatcgaggacttgtcctacatggtgagggagctcctcatccagttctacaaatccacccgcttcaaacccaccaggatcattttctaccgcgacggcgttcctgaggggcagctcccgcagatccttcactatgagctcctagcaatccgagacgcctgcatcaaactggaaaaggattaccagcctggcatcacctacatcgtcgtccagaaaaggcatcacacccgtctcttctgcgcagacaagaacgagaggattgggaagagcgggaacatcccagcaggaacaacagtggatacaaatatcacccacccctttgagttcgacttctacctgtgcagtcatgcaggcattcagggtacgagccggccatcccattactacgtgctctgggatgacaaccggttcaccgcggatgagctgcagatcctcacgtaccagctgtgccatacctacgtgcgctgcacccgctcggtctccatcccggccccggcgtactacgcccggctcgtggcgttccgagcccggtaccatctcgtggacaaggagcacgacagtggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcgaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgttttttttccaatgagaaatcactgcagggcaggcagcgtcaattcgaggcaggagaccagcaccacgggacagaaagatccaacacctttgtaggattggaagagactgatgattatttttttaatttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaaggaagggataaaactcccaggaggcggaagcaggttttcatttttaagatgcaatactatagactcctgactgtgaaatggcggatttggtcctccgttgcccaccaggcgctgacatcgatatgctatgcaaactaagtgctgagccctctgatgtcatgttttgtgaagatcctacgtttagcacagtcctgttttttcctcaagactacagtatttggttcatattctcctttgcaccttgtgtcaacctccactgctgtatatctgcaaggtgacggggaggagaccaggaactattcatggtcagtagagtagtgaactcctaggaaggcttttagagcgtagggaatgcatcaacactaagtgtcaacatgagaagcctacattcctgtacacaagtgcctgcatagtgacacaaatccagcacctccatctcatcctcagaactcgggcttgtgttcgttgaaagcaaaatgatctcagaggggctgtacccactcaccttgtgttagaaagcccctcgttaagaataaaattggggttaaggtcaaggttctctctgcaaatcagtttgttcaccagcattacaacggaaagcacctggctgctcttctgcagcgaggggcaaaagtattttggtttctagtttttattttagtgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggcatttacagaaacagcttgttgctctgtaacaatttttttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagactcgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaactctcagctgttgacttgcagatcgtgttctgcccttatttcaccgtctgcgttgggttttcatggttttgaataaataaaaaagccaaactcagtagctgctgtgccctttaaaccctatttccattttgaagaaatcgagaaggggtttgagtcacccgcatgttttgtataacggactatgcactgtaccctctacgcggctccagcattcagcatttctacccttttcttgtccgagatgcaaacgagtaactgcatgttgaggtgctgtgtgttttgctacccgtagtggatagtgttaacccggatacatatcaggatttgtagttagccacaaaccccccacggacatcccgaatggctcccgagtctctgccttctccgtgcgcacgtgttccttctgcaactggaaacatcgccaggtgcatgcagttttgtgggaagaggagtaactttcatttacctgtcagttgttgaatgctgtttgtttcccttatctcatatctgaacgtagcggggccgagggggcagagcaggcccctctccccccagagcttccaggggcggtcggggtgtcctggtgttcgcaagcgtacgacccgatgtcttagtctcaaaaagcccaagcgttcaacgttgcctcgcggaaggttttcttcttggaaaattagcgtgaaataaaggaatgtgattctttcaggaagggaagccagacagcaggacagcaataaacaagtgaaaattcatatcttgcctgagtgatttgcacttcaatagttgtgaaagaaaatttacgggactccagtgcttttgtgttcaatttctagcccctttcgtacctcctttatacgagcaagtgttgaactgtacatggggtgttcacaagacactctgtttgggttgttatttttcttgtggttttgttttggttttttttttttttttgctttagcttgaactctgtatggtccatttgttaaatagacgtgaacagttgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcttatattttaaaggttgaatatcaaatttttttttttttgtatgcgtggaattaagactggtaaagagtaacgaaatccttggattaggccaaaaggaaatactgtaagatcataaccacctctttattaaagaaaacggtatgattaaagagctccagaacattgtatttatatttgatttgatttgattgcctttgtggatttttaaaatttttttttttttttttgccttggtcctgatttttgcttgcaactttgactttgcagtcccaagtgtctgttaccctgtaactgttggcagaagacctaaataaaagcaatgtgaata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]