2024-04-24 05:01:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026646729 6241 bp mRNA linear VRT 15-JUL-2019 DEFINITION PREDICTED: Terrapene carolina triunguis argonaute RISC catalytic component 2 (AGO2), transcript variant X2, mRNA. ACCESSION XM_026646729 VERSION XM_026646729.2 DBLINK BioProject: PRJNA435426 KEYWORDS RefSeq. SOURCE Terrapene carolina triunguis (Three-toed box turtle) ORGANISM Terrapene carolina triunguis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020664409.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 15, 2019 this sequence version replaced XM_026646729.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Terrapene carolina triunguis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6241 /organism="Terrapene carolina triunguis" /mol_type="mRNA" /isolate="2854851" /isolation_source="Kennedy Woods, Forest Park" /sub_species="triunguis" /db_xref="taxon:2587831" /chromosome="Unknown" /sex="male" /tissue_type="blood" /country="USA: St. Louis, MO" gene 1..6241 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:112106672" CDS 105..2549 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_026502514.1" /db_xref="GeneID:112106672" /translation="
MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKQVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 240..467 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 495..647 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 648..1010 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(804..806,849..851,891..893,903..905,957..959, 978..980,984..986) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1143..2420 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1554..1556,1566..1568,1602..1613,1620..1622, 1644..1646,1653..1655,1665..1667,1677..1679) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1758..1760,1764..1766,1974..1976,2388..2390) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
caccattgccaccaccaatacagggatatgcctttaaacctcctcctcgaccagattttggtacttctggaagaacaatcaaactacaggccaacttctttgaaatggacattcctaaaattgatatctaccattatgaattggatataaagccagagaaatgccctagaagagttaaccgagaaatagttgagcatatggtccagcactttaaaacacagatctttggggatcgtaaaccagtatttgatggaagaaaaaacctatatacagctatgccacttcctattgggagggataaacaggtggagttggaggtcacacttccaggagaagggaaggacagaatatttaaggtggctataaaatggatgtcctgtgtgagtctgcaggctttacatgatgctctttctggtcggctgccaagtgttccttttgaaactatccaggcactggatgtagtgatgaggcatttgccttccatgaggtatactcctgttggccggtctttttttacggcatctgaaggctgctcaaaccctttgggtggtggcagagaagtttggtttgggttccatcaatcagttagaccttcactctggaaaatgatgcttaatattgatgtgtctgcaacagcattttataaggcacagccagtaattgagtttgtatgtgaagttttggatttcaagagtattgaagagcaacagaaacctctcacagattcccaaagggtaaagtttaccaaagaaataaaaggtctaaaggtggagataacacactgtgggcaaatgaagagaaaataccgagtgtgcaatgtcaccagacggccagcaagtcaccaaacattcccacttcagcaggagagtggacaaacagttgaatgcactgtagctcaatattttaaggacaggcacaagttggttctacgctatcctcatcttccatgtttacaagttggacaggagcagaaacatacataccttcctcttgaggtgtgcaacatagtggcaggacagaggtgtataaagaagctgactgacaatcaaacttccactatgatacgggcaactgccagatcagcacctgaccgtcaagaagagattagcaaattgatgcgaagtgcaagttttaatactgatccttatgttcgtgaatttggaataatggtcaaagatgaaatgactgatgtgactgggagagtcctacaacctccctcaatcctgtatggaggcagaaataaagcaattgctacaccagttcaaggggtttgggatatgaggaataaacagtttcacactggaattgaaattaaggtctgggcaattgcctgcttcgctccccagcgacagtgcactgaagttcatcttaagtccttcacagaacaactgaggaagatatcaagagatgcaggaatgccaatccaggggcagccatgtttctgtaaatatgcccagggtgcagatagtgtggaacctatgttcagacatctaaagaacacctatgctgggctacagcttgtggtagtcattctgccagggaagactccagtttatgcggaagtaaagcgtgttggtgacactgtgctggggatggctacacagtgtgttcagatgaaaaatgtgcaaagaacaacaccacaaactctgtccaatctttgtttaaagatcaacgtcaaattaggaggagtaaataacattttactgccacaaggaaggcctccggtatttcagcagcctgtcatattcctgggtgcagatgtaactcatccaccggctggagatggaaaaaagccttccattgctgcagttgtaggtagcatggatgctcaccctaatcgatactgtgccactgtgcgtgtccagcagcatcgtcaagaaatcatccaagatttggctgccatggtcagggagctgcttattcagttctacaaatcaaccagatttaaaccaactcgcattattttctacagagatggtgtttctgaggggcaatttcaacaggttctccaccatgaattgctggctatcagagaagcatgcattaaactagaaaaggactaccagcctggaattacatttattgttgtgcagaaaaggcatcacaccaggctcttctgtacagacaaaaatgaacgggttggaaaaagtggaaacattccagcaggtactacagtggacacaaaaatcacccatccatcagagtttgacttttacctttgtagtcatgctggtattcagggaacaagcagaccttctcattaccatgtcctctgggatgacaatcgtttctcttcagatgaactgcaaattcttacctatcagctgtgtcatacatatgtacgctgtactcgttccgtctcaatccccgcaccagcatactatgcacacctggttgccttcagagccaggtatcatctggtggataaagaacatgatagtgctgaaggaagccacacttctggtcaaagtaatggcagagatcatcaagcacttgctaaagcagttcaagttcatcaggacacgttacgtaccatgtactttgcttgacatgttttaatgtttagcgattcagtagagttggattcacgtgagaccagctgcacttagaccaacagttgcccaagctacaatgacagccagcaatgagtgatgcatctttattttattagttttttccatttgcaagaaagccttccgtccggaatttcagacttgattatgaactgcagacccgtacaaaaccccacagttgttggaaatgtggtttgccaaaatctctaagctgcttgtcagaaaacagacccatattttgtagttaaatcaaaagctgtgatctcagggctaaaaacaaaacaaaactttttcatgtagtttgctattcaatttatttgtgtgttaataatttggaaataccttattcacgtcaaatttgatgggctcagatgctgtgagcttgcttttaaaactaagaaagaaaaggaaaagcactacttgggtatttatgaagccttgatcattctggatgcatttacaaaagttttattttcaaagtgcaaaaagataataattctggtcctccactgtcttacaggatcattctgtatgtctaagaacaaatgtattttctgaaatttgttcttgaatgtcttttattgtgctgcatttaaagatgtttttcatagacttatgaaataatttcagaaaaaaatgaacttgtatctgaacctttaataggtccagtgagattggcaaaaaaaaatgtgccatttaaatttttttaaacttttttttttttttttaatcatactgacagctaatcacagaatttgtcctgcaggactgtgacacttactttccaaagtttctaaagaatacgggtctgtggtgataaatacagtacaatccttcactgttatttttgaatttttgtaaattttatatgtttcacagtattaatgtgatagactagatgctattatttattttatttactaaggcgtgctcatcatatttctgttaacatatcaagaaagctttggattttagacattaaaagtttatcatggagacattattattcaaatgcaggaatatgcaattgactttgatatgacagatcagagatacatacagtgtatattgtatagcttgtaatttctggaaagactttttcagcatgcacacaacatggcaggtttcacctgtgcattcagagagagagacaccgtgagaccaacattctccatccattcaagcacaaaacaattcttctttatttatttgttgattattggtgaagcagcagttcaaattgaggagaatggttcactctttatagtttagctagccaaatttaatagaatctatgcagtaaaaataactcttaggaaactgttgaagtttacttgtggaagaaagtgaaactctttgttatacataaggtcaatagtatgagtgagatttttgccattctcttagagaagtattaattaaaactgataattattagacagatatgcttctgttagtttgcacactgggttcatatacatcataatacatgtataaaccattgcactaattgtgacaccataaaccattttagaagaggatggggaaaaaaacccgaaagttatttatgctgacttgattttgtttaatgttctcgtatgctaaatcaagtacatattaagcatgtagattttttttaagttgcattctcttgctctgtttcattcagctttctctttcccttcccctagcaaacacatttacctctagcatcaaggtgggcaaacagcctcatccagaattagtgtcagtgccatattttgtatagactagaactgtttgctgttgagtaagccagaaaatgcccaactttgctgcctaaaaggtttaggtgcataattttgtgtacaagttcaggtctgcaccttgtagcacagcatgctgttgctcgtgttgtttggctgaagcaacaaagtaaattctgttaatggatgagtcagtcatatgtagatcgtgctagtttattattcctgtcttgctgttgaaatcagtgggccagaatctgttctcagttatagttgtgtaaatactgttattcctgattacactggtaactgaaaatagaattcagccctttgcaattactaagcaggtcataaaagcctccactaaaacaaatttagctgatttgcagtagcttttctatgatgactttgttgcacttttctctatagtattttgagcagtgtagaaattcattgcaagctttaattttggcacattatcagacaattgtatgagttattctttaagaagttaaaataattagtcagccatttttaaaattccattggtagttcttgctattccttatgattaggtgctcaggatgatattcatcattttattctcctctttccctgctgcacaacctggagtaaattactttatatgggcaaccagatacagcgaggatccacctcaatcccacatcctgaattcaagggtagatcaaagggctatggtgcctcctcttgtggcttctgttctagtctatgggctagaataccaggtgcttctccaatgtgggagttccggtctactggctctgtgcacagatccagagacccctaacatgcagcccagatacccaaaagacctgggtgcagaggattgcagtgggggctctgcagacactccaccaaagtgtctgttgtctcaatgtcctattagcatgaatgggaattctgtgcagttccctcaaatgtaatgaaggatgcaaacccctgaggaatgattgtcagtatgatgggactggggagtttacagtttgtagatacatatattagctagagtactctaattttaaaaatggctttgattttttcctaatgaaatatacagtgaattagtccatcatataatttaattgatttaaatatttttaggaaaagttttttaatgggcaatgcactttgaaaagtaggcactctgtgtgcataataactgctttttataaagattaatataaacaacatgcatagaccaaaacagctccaatcaaataaacaatacacctttatccttttcagtttactccagcctgcaaggacatcaatatctctggtaaacatgtataaatttacccacaaaatattctctctaggaactaaggaaaagtgtttacaaattattgtgtatacaaagtttaggattgtgacacatgcccacagatgctattgaattcatacgtaaggctgatagttttaaccattatgtcactagttcaaattcaactcaggtcagcagtaaccaaaagtacttactatctgcagttcgttggcctgtgcaaaaagatgtctaactccagttgctcgagaaccatgaagcagaccctcttctgttacagtggttctgctctgagctacatttgcaccaattgcggcaatggtattttgtatcttggtctaacaattggtacaaattggccttcttgttagcaaaaccaggtcaggattgaacaatgtggaacaattgtgcgttcacaatgtactgttttgtgggaaaacgggatccaagctctacatctcagatcctttattagcattatatttatctaaaatgatttgtatgaaaaaggctgataagtgatggacacgttagaaataggtacgtgaagccttacgttgtgggggagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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